Wall clock time and date at job start Tue Mar 31 2020 05:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99937 * 2 1 4 4 H 1.48498 * 109.46802 * 270.00315 * 3 2 1 5 5 H 1.48502 * 109.46949 * 30.00001 * 3 2 1 6 6 H 1.48495 * 109.47206 * 149.99960 * 3 2 1 7 7 C 1.37876 * 120.00187 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99893 * 0.02562 * 7 2 1 9 9 C 1.50697 * 119.99883 * 179.97438 * 7 2 1 10 10 N 1.46500 * 109.47081 * 180.02562 * 9 7 2 11 11 C 1.34774 * 120.00270 * 179.97438 * 10 9 7 12 12 O 1.21585 * 120.00113 * 0.02562 * 11 10 9 13 13 N 1.34775 * 119.99985 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00027 * 180.02562 * 13 11 10 15 15 C 1.52993 * 109.47417 * 180.02562 * 14 13 11 16 16 C 1.53099 * 109.52781 * 294.67864 * 15 14 13 17 17 C 1.53034 * 109.29509 * 182.43453 * 16 15 14 18 18 N 1.46847 * 109.51345 * 59.18740 * 17 16 15 19 19 C 1.46898 * 110.99897 * 174.16738 * 18 17 16 20 20 C 1.52999 * 117.50000 * 248.61536 * 19 18 17 21 21 C 1.52999 * 60.00272 * 252.51270 * 20 19 18 22 22 C 1.46854 * 111.19790 * 298.26320 * 18 17 16 23 23 C 1.53039 * 109.52227 * 61.74204 * 22 18 17 24 24 H 0.97004 * 120.00321 * 359.97438 * 1 2 3 25 25 H 1.09002 * 109.47406 * 60.00368 * 9 7 2 26 26 H 1.08996 * 109.47252 * 299.99766 * 9 7 2 27 27 H 0.97001 * 119.99874 * 0.02562 * 10 9 7 28 28 H 0.97001 * 120.00158 * 0.02562 * 13 11 10 29 29 H 1.09004 * 109.46916 * 60.00536 * 14 13 11 30 30 H 1.09001 * 109.47544 * 300.00822 * 14 13 11 31 31 H 1.09002 * 109.52267 * 54.87463 * 15 14 13 32 32 H 1.09007 * 109.48839 * 62.49095 * 16 15 14 33 33 H 1.09009 * 109.50682 * 302.38881 * 16 15 14 34 34 H 1.09002 * 109.46271 * 299.17460 * 17 16 15 35 35 H 1.08994 * 109.46242 * 179.19760 * 17 16 15 36 36 H 1.08997 * 115.55242 * 34.33050 * 19 18 17 37 37 H 1.08999 * 117.49599 * 0.02562 * 20 19 18 38 38 H 1.08995 * 117.49715 * 145.01671 * 20 19 18 39 39 H 1.09000 * 117.49718 * 252.51107 * 21 20 19 40 40 H 1.09002 * 117.49753 * 107.49143 * 21 20 19 41 41 H 1.08993 * 109.46229 * 181.76227 * 22 18 17 42 42 H 1.09008 * 109.45803 * 301.73838 * 22 18 17 43 43 H 1.08994 * 109.50227 * 60.75933 * 23 22 18 44 44 H 1.08998 * 109.50241 * 180.83988 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4965 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7000 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5115 -1.1939 0.0000 10 7 3.9999 -2.5751 0.0001 11 6 5.3250 -2.8214 -0.0009 12 8 6.1151 -1.8973 -0.0014 13 7 5.7742 -4.0921 -0.0003 14 6 7.2146 -4.3598 -0.0008 15 6 7.4524 -5.8711 -0.0005 16 6 6.9374 -6.4700 1.3109 17 6 7.2326 -7.9715 1.3315 18 7 8.6797 -8.1886 1.2088 19 6 9.0137 -9.6107 1.3634 20 6 9.7841 -10.0230 2.6193 21 6 10.4885 -10.0052 1.2612 22 6 9.1893 -7.6638 -0.0647 23 6 8.9522 -6.1531 -0.1267 24 1 -0.4851 0.8401 0.0004 25 1 3.8752 -0.6795 0.8895 26 1 3.8745 -0.6807 -0.8905 27 1 3.3696 -3.3124 0.0001 28 1 5.1439 -4.8294 0.0005 29 1 7.6661 -3.9205 0.8888 30 1 7.6654 -3.9215 -0.8912 31 1 6.9248 -6.3230 -0.8405 32 1 5.8618 -6.3095 1.3864 33 1 7.4374 -5.9892 2.1518 34 1 6.7210 -8.4537 0.4985 35 1 6.8797 -8.3981 2.2704 36 1 8.2769 -10.3119 0.9716 37 1 10.0427 -9.2390 3.3311 38 1 9.5539 -10.9955 3.0543 39 1 10.7218 -10.9662 0.8027 40 1 11.2109 -9.2095 1.0794 41 1 10.2574 -7.8672 -0.1399 42 1 8.6683 -8.1473 -0.8911 43 1 9.4839 -5.6675 0.6914 44 1 9.3170 -5.7664 -1.0782 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000426448381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:20 Heat of formation + Delta-G solvation = -12.941391 kcal Electronic energy + Delta-G solvation = -21705.350637 eV Core-core repulsion = 18464.840908 eV Total energy + Delta-G solvation = -3240.509728 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -39.92524 -39.10724 -37.07248 -34.67657 -34.04933 -32.41928 -31.80600 -31.06992 -28.10804 -26.37177 -23.74634 -22.88046 -22.39370 -21.79377 -20.90395 -20.33557 -19.87589 -18.17108 -17.03761 -16.31402 -15.93425 -15.48000 -15.24742 -14.96268 -14.49470 -14.40149 -14.28925 -13.93420 -13.55921 -13.17788 -13.09642 -12.77587 -12.48916 -12.44916 -12.29900 -11.88717 -11.83565 -11.45435 -11.07301 -10.96612 -10.80783 -10.78072 -10.70273 -10.54378 -10.38489 -9.93453 -9.55102 -9.42166 -8.80775 -8.71144 -8.62821 -7.96124 -6.18184 -4.19814 3.28618 3.32032 3.34595 3.39099 3.45941 3.46419 3.86859 4.37098 4.46451 4.49107 4.55195 4.56959 4.63466 4.82948 4.95721 5.01305 5.08090 5.12910 5.17501 5.23651 5.27505 5.31557 5.43408 5.49334 5.55912 5.60096 5.66889 5.74892 5.82845 5.88550 5.92725 5.99403 6.21582 6.75175 6.78249 6.80404 6.84833 7.15705 7.28932 7.45336 7.62163 8.31838 8.73136 8.85654 9.26389 9.44078 10.93776 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.046041 B = 0.002554 C = 0.002474 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 608.004154 B =10958.858340 C =11313.473821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.077 3.923 3 Si 0.877 3.123 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.260 1.260 7 C -0.541 4.541 8 H 0.079 0.921 9 C 0.238 3.762 10 N -0.724 5.724 11 C 0.694 3.306 12 O -0.605 6.605 13 N -0.755 5.755 14 C 0.148 3.852 15 C -0.100 4.100 16 C -0.112 4.112 17 C 0.060 3.940 18 N -0.511 5.511 19 C 0.003 3.997 20 C -0.163 4.163 21 C -0.177 4.177 22 C 0.059 3.941 23 C -0.109 4.109 24 H 0.267 0.733 25 H 0.023 0.977 26 H 0.018 0.982 27 H 0.392 0.608 28 H 0.392 0.608 29 H 0.063 0.937 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.075 0.925 34 H 0.033 0.967 35 H 0.076 0.924 36 H 0.088 0.912 37 H 0.100 0.900 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.099 0.901 41 H 0.076 0.924 42 H 0.033 0.967 43 H 0.075 0.925 44 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.821 -21.559 1.588 28.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.127 4.127 3 Si 0.704 3.296 4 H -0.199 1.199 5 H -0.210 1.210 6 H -0.184 1.184 7 C -0.579 4.579 8 H 0.097 0.903 9 C 0.116 3.884 10 N -0.376 5.376 11 C 0.394 3.606 12 O -0.485 6.485 13 N -0.412 5.412 14 C 0.023 3.977 15 C -0.119 4.119 16 C -0.150 4.150 17 C -0.067 4.067 18 N -0.236 5.236 19 C -0.105 4.105 20 C -0.201 4.201 21 C -0.214 4.214 22 C -0.069 4.069 23 C -0.147 4.147 24 H 0.077 0.923 25 H 0.041 0.959 26 H 0.036 0.964 27 H 0.225 0.775 28 H 0.225 0.775 29 H 0.082 0.918 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.089 0.911 33 H 0.094 0.906 34 H 0.052 0.948 35 H 0.094 0.906 36 H 0.106 0.894 37 H 0.119 0.881 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.117 0.883 41 H 0.094 0.906 42 H 0.051 0.949 43 H 0.094 0.906 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 19.587 -20.263 1.959 28.250 hybrid contribution -0.749 -0.302 -0.693 1.064 sum 18.837 -20.565 1.266 27.917 Atomic orbital electron populations 1.69884 1.06205 1.27382 1.49669 1.24790 0.94796 0.99186 0.93927 0.86804 0.80615 0.83161 0.79043 1.19875 1.20959 1.18416 1.21101 0.88607 0.95164 1.53063 0.90328 1.19345 0.94761 0.77739 0.96601 1.45389 1.03767 1.10981 1.77477 1.16125 0.83504 0.82760 0.78245 1.90859 1.55431 1.43280 1.58881 1.45130 1.07521 1.06460 1.82106 1.21089 0.80807 0.93749 1.02075 1.21451 0.96868 0.95131 0.98447 1.21663 1.01163 0.94264 0.97888 1.22077 0.86830 0.96871 1.00949 1.61718 1.14417 1.13524 1.33919 1.22409 0.94762 0.89662 1.03703 1.23062 1.03249 1.02446 0.91334 1.23060 0.94407 1.02724 1.01215 1.22072 1.00210 0.95069 0.89516 1.21570 0.95299 0.95161 1.02721 0.92307 0.95935 0.96429 0.77537 0.77507 0.91837 0.92016 0.90832 0.91074 0.90643 0.94839 0.90584 0.89412 0.88115 0.88891 0.88785 0.88305 0.90587 0.94863 0.90618 0.90998 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.78 13.96 55.43 0.77 -26.01 16 2 C 0.08 2.19 5.47 -17.82 -0.10 2.10 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.26 -6.45 6.54 56.52 0.37 -6.08 16 7 C -0.54 -15.09 9.83 -34.44 -0.34 -15.42 16 8 H 0.08 2.27 7.84 -52.49 -0.41 1.86 16 9 C 0.24 6.04 4.50 -5.20 -0.02 6.02 16 10 N -0.72 -15.21 5.55 -66.42 -0.37 -15.58 16 11 C 0.69 13.98 8.57 -86.92 -0.74 13.24 16 12 O -0.60 -14.71 16.34 5.29 0.09 -14.62 16 13 N -0.75 -10.89 5.31 -65.23 -0.35 -11.23 16 14 C 0.15 1.83 5.07 -4.04 -0.02 1.81 16 15 C -0.10 -0.90 2.29 -90.51 -0.21 -1.11 16 16 C -0.11 -0.99 5.22 -26.66 -0.14 -1.13 16 17 C 0.06 0.49 5.43 -3.84 -0.02 0.47 16 18 N -0.51 -4.25 4.80 -226.69 -1.09 -5.34 16 19 C 0.00 0.03 5.30 -67.71 -0.36 -0.33 16 20 C -0.16 -1.08 10.46 -26.73 -0.28 -1.36 16 21 C -0.18 -1.10 9.70 -26.73 -0.26 -1.36 16 22 C 0.06 0.45 5.34 -3.83 -0.02 0.43 16 23 C -0.11 -0.89 5.38 -26.65 -0.14 -1.03 16 24 H 0.27 7.48 8.31 -40.82 -0.34 7.15 16 25 H 0.02 0.61 7.20 -51.93 -0.37 0.23 16 26 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 27 H 0.39 7.18 8.34 -40.82 -0.34 6.84 16 28 H 0.39 4.54 7.70 -40.82 -0.31 4.22 16 29 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.61 7.27 -51.93 -0.38 0.24 16 33 H 0.07 0.75 8.14 -51.92 -0.42 0.33 16 34 H 0.03 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.61 8.12 -51.93 -0.42 0.19 16 36 H 0.09 0.62 8.08 -51.93 -0.42 0.20 16 37 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 38 H 0.09 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.10 0.64 7.23 -51.93 -0.38 0.26 16 41 H 0.08 0.54 6.68 -51.93 -0.35 0.19 16 42 H 0.03 0.26 8.14 -51.92 -0.42 -0.16 16 43 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 350.64 15.07 5.28 5.28 Total: -1.00 -32.96 350.64 -10.57 -43.53 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -7.59 Total: 4.52 kcal Atomic # 6 Polarization: 4.98 SS G_CDS: -2.65 Total: 2.33 kcal Atomic # 7 Polarization: -57.13 SS G_CDS: -1.03 Total: -58.17 kcal Atomic # 8 Polarization: -14.71 SS G_CDS: 0.09 Total: -14.62 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -32.96 -10.57 -43.53 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000426448381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.588 kcal (2) G-P(sol) polarization free energy of solvation -32.955 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds