Wall clock time and date at job start Tue Mar 31 2020 05:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99771 * 2 1 4 4 C 1.53004 * 109.47245 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47187 * 64.99811 * 4 3 2 6 6 C 1.36941 * 120.00019 * 264.42982 * 5 4 3 7 7 H 1.07999 * 120.00170 * 146.16054 * 6 5 4 8 8 C 1.38812 * 120.00092 * 326.17104 * 6 5 4 9 9 N 1.31624 * 119.99752 * 337.62248 * 8 6 5 10 10 Si 1.86795 * 120.00391 * 157.63001 * 8 6 5 11 11 H 1.48499 * 109.47378 * 89.99425 * 10 8 6 12 12 H 1.48493 * 109.47495 * 209.99953 * 10 8 6 13 13 H 1.48507 * 109.47096 * 329.99792 * 10 8 6 14 14 C 1.46495 * 120.00208 * 84.43409 * 5 4 3 15 15 C 1.50699 * 109.47371 * 89.99779 * 14 5 4 16 16 C 1.39868 * 126.04188 * 90.02550 * 15 14 5 17 17 N 1.30831 * 108.20429 * 179.97438 * 16 15 14 18 18 N 1.40084 * 108.20884 * 359.97438 * 17 16 15 19 19 C 1.46495 * 126.04108 * 180.02562 * 18 17 16 20 20 C 1.52995 * 109.47380 * 254.97386 * 19 18 17 21 21 C 1.53003 * 109.47083 * 14.97742 * 19 18 17 22 22 C 1.53008 * 109.46931 * 134.97394 * 19 18 17 23 23 C 1.34952 * 107.91917 * 359.75868 * 18 17 16 24 24 H 1.09004 * 109.46756 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47110 * 299.99762 * 1 2 3 26 26 H 1.08995 * 109.47212 * 60.00047 * 1 2 3 27 27 H 1.08990 * 109.47294 * 60.00115 * 3 2 1 28 28 H 1.09004 * 109.47239 * 300.00079 * 3 2 1 29 29 H 1.09002 * 109.46688 * 305.00067 * 4 3 2 30 30 H 1.08994 * 109.47016 * 184.99860 * 4 3 2 31 31 H 0.96996 * 119.99600 * 179.97438 * 9 8 6 32 32 H 1.08996 * 109.47270 * 210.00011 * 14 5 4 33 33 H 1.08999 * 109.47120 * 329.99853 * 14 5 4 34 34 H 1.08001 * 125.89796 * 359.95362 * 16 15 14 35 35 H 1.09007 * 109.47107 * 60.00307 * 20 19 18 36 36 H 1.08999 * 109.47263 * 179.97438 * 20 19 18 37 37 H 1.08997 * 109.47269 * 300.00299 * 20 19 18 38 38 H 1.08998 * 109.46782 * 59.99789 * 21 19 18 39 39 H 1.09000 * 109.46974 * 179.97438 * 21 19 18 40 40 H 1.08995 * 109.46915 * 300.00159 * 21 19 18 41 41 H 1.08997 * 109.46907 * 60.00198 * 22 19 18 42 42 H 1.08999 * 109.46685 * 180.02562 * 22 19 18 43 43 H 1.08996 * 109.47180 * 299.99863 * 22 19 18 44 44 H 1.08005 * 126.12559 * 180.23645 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.2068 -0.7842 -1.3044 7 1 3.9952 -1.3340 -2.2096 8 6 4.7128 -1.4449 -0.1934 9 7 5.3732 -0.7743 0.7267 10 14 4.4567 -3.2855 -0.0042 11 1 5.5858 -4.0104 -0.6403 12 1 4.3967 -3.6312 1.4387 13 1 3.1838 -3.6782 -0.6606 14 6 4.1689 1.3872 -2.4494 15 6 5.5899 1.8872 -2.4913 16 6 6.6722 1.2409 -3.0973 17 7 7.7379 1.9802 -2.9258 18 7 7.3669 3.1224 -2.2046 19 6 8.2575 4.2123 -1.7984 20 6 8.5501 4.1007 -0.3009 21 6 9.5680 4.1191 -2.5825 22 6 7.5844 5.5556 -2.0879 23 6 6.0429 3.0441 -1.9552 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8465 -0.8900 29 1 3.8514 0.5683 0.8410 30 1 3.9785 2.1766 0.0889 31 1 5.7265 -1.2359 1.5033 32 1 3.9679 0.7888 -3.3379 33 1 3.4858 2.2361 -2.4209 34 1 6.6347 0.2948 -3.6168 35 1 9.0296 3.1437 -0.0947 36 1 9.2131 4.9114 0.0012 37 1 7.6165 4.1670 0.2577 38 1 9.3595 4.1987 -3.6494 39 1 10.2305 4.9304 -2.2806 40 1 10.0474 3.1622 -2.3764 41 1 6.6508 5.6219 -1.5293 42 1 8.2473 6.3665 -1.7861 43 1 7.3760 5.6351 -3.1547 44 1 5.4515 3.7728 -1.4207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453596436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:50 Heat of formation + Delta-G solvation = 54.754006 kcal Electronic energy + Delta-G solvation = -23168.606580 eV Core-core repulsion = 19931.032345 eV Total energy + Delta-G solvation = -3237.574236 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53883 -37.18207 -36.53283 -35.06282 -31.50100 -30.00606 -29.90947 -28.20372 -27.38147 -27.24401 -25.61328 -24.98271 -22.97199 -21.76227 -20.45312 -19.22950 -18.61041 -16.59007 -16.29868 -15.64231 -15.03872 -14.83446 -14.52783 -14.15440 -13.93480 -13.79001 -13.57085 -13.33900 -13.02201 -12.77730 -12.36976 -12.14652 -11.98861 -11.88442 -11.75529 -11.67333 -11.52172 -11.07335 -10.95367 -10.88232 -10.75908 -10.62503 -10.43411 -10.13526 -9.84894 -9.69668 -9.55178 -8.79799 -8.57572 -8.27467 -7.51532 -6.43688 -5.59201 -3.07631 2.68383 3.08200 3.51273 3.58018 3.63049 3.76708 4.62291 4.69479 4.73748 4.84799 4.95557 5.38581 5.43922 5.48067 5.54403 5.65087 5.70412 5.72298 5.75371 5.79404 5.82809 5.84693 5.90774 5.99792 6.09171 6.15937 6.23112 6.25727 6.29706 6.36759 6.46800 6.63477 6.71747 6.81438 6.97442 7.13132 7.54329 7.78353 7.84006 7.99132 8.12472 8.54296 8.70147 9.36731 10.02384 10.56226 11.43577 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.005318 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.986901 B = 5263.984659 C = 6005.351478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.356 6.356 3 C 0.046 3.954 4 C 0.145 3.855 5 N -0.567 5.567 6 C -0.231 4.231 7 H 0.058 0.942 8 C 0.013 3.987 9 N -0.891 5.891 10 Si 0.894 3.106 11 H -0.292 1.292 12 H -0.293 1.293 13 H -0.279 1.279 14 C 0.212 3.788 15 C -0.214 4.214 16 C 0.066 3.934 17 N -0.311 5.311 18 N -0.373 5.373 19 C 0.185 3.815 20 C -0.158 4.158 21 C -0.140 4.140 22 C -0.156 4.156 23 C 0.041 3.959 24 H 0.074 0.926 25 H 0.025 0.975 26 H 0.028 0.972 27 H 0.023 0.977 28 H 0.027 0.973 29 H 0.107 0.893 30 H 0.034 0.966 31 H 0.249 0.751 32 H 0.051 0.949 33 H 0.036 0.964 34 H 0.172 0.828 35 H 0.065 0.935 36 H 0.068 0.932 37 H 0.063 0.937 38 H 0.061 0.939 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.073 0.927 43 H 0.063 0.937 44 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.448 12.354 -3.332 12.803 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.274 6.274 3 C -0.033 4.033 4 C 0.018 3.982 5 N -0.286 5.286 6 C -0.361 4.361 7 H 0.076 0.924 8 C -0.186 4.186 9 N -0.535 5.535 10 Si 0.725 3.275 11 H -0.219 1.219 12 H -0.219 1.219 13 H -0.204 1.204 14 C 0.085 3.915 15 C -0.228 4.228 16 C -0.121 4.121 17 N -0.132 5.132 18 N -0.158 5.158 19 C 0.101 3.899 20 C -0.216 4.216 21 C -0.197 4.197 22 C -0.214 4.214 23 C -0.104 4.104 24 H 0.092 0.908 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.041 0.959 28 H 0.045 0.955 29 H 0.124 0.876 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.189 0.811 35 H 0.084 0.916 36 H 0.087 0.913 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 1.964 12.334 -3.360 12.934 hybrid contribution -1.246 -0.814 0.625 1.615 sum 0.718 11.520 -2.736 11.862 Atomic orbital electron populations 1.22629 0.84306 1.01445 0.98362 1.88211 1.16510 1.27832 1.94811 1.23450 0.99159 0.83998 0.96701 1.20963 0.86950 0.96767 0.93505 1.43833 1.74735 1.04072 1.05911 1.18884 1.35327 0.82543 0.99381 0.92395 1.24939 0.97053 0.97285 0.99309 1.69988 1.36139 1.35033 1.12335 0.86435 0.77930 0.86419 0.76759 1.21918 1.21914 1.20419 1.19319 0.87691 0.93052 0.91482 1.21263 1.00407 0.95082 1.06025 1.23584 0.90175 0.98740 0.99553 1.77121 1.23677 0.96078 1.16353 1.48559 1.06024 1.16925 1.44263 1.20468 0.90136 0.84317 0.94936 1.22238 1.02562 1.02876 0.93939 1.21856 0.94878 1.02796 1.00193 1.22203 1.01309 0.95263 1.02665 1.21928 0.85185 1.00175 1.03089 0.90761 0.95608 0.95293 0.95865 0.95518 0.87553 0.94815 0.94094 0.93092 0.94555 0.81115 0.91585 0.91275 0.91835 0.91966 0.91714 0.91125 0.91757 0.90798 0.91817 0.82920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.50 11.01 101.05 1.11 1.61 16 2 O -0.36 -7.87 10.44 -35.23 -0.37 -8.24 16 3 C 0.05 0.93 6.28 37.16 0.23 1.17 16 4 C 0.15 3.39 5.63 -4.04 -0.02 3.36 16 5 N -0.57 -13.84 2.39 -174.62 -0.42 -14.26 16 6 C -0.23 -6.33 9.28 -15.06 -0.14 -6.47 16 7 H 0.06 1.60 7.92 -52.49 -0.42 1.18 16 8 C 0.01 0.36 4.91 -17.43 -0.09 0.28 16 9 N -0.89 -26.19 11.35 55.49 0.63 -25.56 16 10 Si 0.89 22.67 29.61 -169.99 -5.03 17.64 16 11 H -0.29 -7.39 7.11 56.52 0.40 -6.98 16 12 H -0.29 -7.50 7.11 56.52 0.40 -7.10 16 13 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 14 C 0.21 4.42 6.17 -5.20 -0.03 4.38 16 15 C -0.21 -4.39 5.68 -105.06 -0.60 -4.98 16 16 C 0.07 1.37 11.96 -17.37 -0.21 1.16 16 17 N -0.31 -6.30 11.66 30.62 0.36 -5.94 16 18 N -0.37 -6.61 3.43 -48.65 -0.17 -6.78 16 19 C 0.19 2.51 1.24 -131.82 -0.16 2.35 16 20 C -0.16 -2.07 8.73 37.16 0.32 -1.75 16 21 C -0.14 -1.73 8.09 37.16 0.30 -1.43 16 22 C -0.16 -1.66 8.29 37.16 0.31 -1.35 16 23 C 0.04 0.76 10.51 -17.22 -0.18 0.58 16 24 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 25 H 0.03 0.38 8.14 -51.93 -0.42 -0.05 16 26 H 0.03 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.03 0.50 8.12 -51.93 -0.42 0.08 16 29 H 0.11 2.90 5.34 -51.93 -0.28 2.62 16 30 H 0.03 0.74 8.11 -51.93 -0.42 0.32 16 31 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 32 H 0.05 1.05 8.04 -51.93 -0.42 0.63 16 33 H 0.04 0.68 8.04 -51.93 -0.42 0.26 16 34 H 0.17 3.37 8.06 -52.49 -0.42 2.94 16 35 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 37 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.07 1.00 8.04 -51.93 -0.42 0.58 16 41 H 0.06 0.67 7.36 -51.93 -0.38 0.29 16 42 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.15 2.44 7.55 -52.48 -0.40 2.05 16 LS Contribution 362.44 15.07 5.46 5.46 Total: -1.00 -32.21 362.44 -6.46 -38.67 By element: Atomic # 1 Polarization: 7.87 SS G_CDS: -7.78 Total: 0.09 kcal Atomic # 6 Polarization: -1.94 SS G_CDS: 0.85 Total: -1.09 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.40 Total: -52.54 kcal Atomic # 8 Polarization: -7.87 SS G_CDS: -0.37 Total: -8.24 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.03 Total: 17.64 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -32.21 -6.46 -38.67 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453596436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.426 kcal (2) G-P(sol) polarization free energy of solvation -32.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.672 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds