Wall clock time and date at job start Tue Mar 31 2020 05:33:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42903 * 113.99771 * 2 1 4 4 C 1.53004 * 109.47245 * 180.02562 * 3 2 1 5 5 N 1.46495 * 109.47187 * 64.99811 * 4 3 2 6 6 C 1.36941 * 120.00019 * 264.42982 * 5 4 3 7 7 H 1.07999 * 120.00170 * 146.16054 * 6 5 4 8 8 C 1.38812 * 120.00092 * 326.17104 * 6 5 4 9 9 N 1.31624 * 119.99752 * 337.62248 * 8 6 5 10 10 Si 1.86795 * 120.00391 * 157.63001 * 8 6 5 11 11 H 1.48499 * 109.47378 * 89.99425 * 10 8 6 12 12 H 1.48493 * 109.47495 * 209.99953 * 10 8 6 13 13 H 1.48507 * 109.47096 * 329.99792 * 10 8 6 14 14 C 1.46495 * 120.00208 * 84.43409 * 5 4 3 15 15 C 1.50699 * 109.47371 * 89.99779 * 14 5 4 16 16 C 1.39868 * 126.04188 * 90.02550 * 15 14 5 17 17 N 1.30831 * 108.20429 * 179.97438 * 16 15 14 18 18 N 1.40084 * 108.20884 * 359.97438 * 17 16 15 19 19 C 1.46495 * 126.04108 * 180.02562 * 18 17 16 20 20 C 1.52995 * 109.47380 * 254.97386 * 19 18 17 21 21 C 1.53003 * 109.47083 * 14.97742 * 19 18 17 22 22 C 1.53008 * 109.46931 * 134.97394 * 19 18 17 23 23 C 1.34952 * 107.91917 * 359.75868 * 18 17 16 24 24 H 1.09004 * 109.46756 * 180.02562 * 1 2 3 25 25 H 1.08999 * 109.47110 * 299.99762 * 1 2 3 26 26 H 1.08995 * 109.47212 * 60.00047 * 1 2 3 27 27 H 1.08990 * 109.47294 * 60.00115 * 3 2 1 28 28 H 1.09004 * 109.47239 * 300.00079 * 3 2 1 29 29 H 1.09002 * 109.46688 * 305.00067 * 4 3 2 30 30 H 1.08994 * 109.47016 * 184.99860 * 4 3 2 31 31 H 0.96996 * 119.99600 * 179.97438 * 9 8 6 32 32 H 1.08996 * 109.47270 * 210.00011 * 14 5 4 33 33 H 1.08999 * 109.47120 * 329.99853 * 14 5 4 34 34 H 1.08001 * 125.89796 * 359.95362 * 16 15 14 35 35 H 1.09007 * 109.47107 * 60.00307 * 20 19 18 36 36 H 1.08999 * 109.47263 * 179.97438 * 20 19 18 37 37 H 1.08997 * 109.47269 * 300.00299 * 20 19 18 38 38 H 1.08998 * 109.46782 * 59.99789 * 21 19 18 39 39 H 1.09000 * 109.46974 * 179.97438 * 21 19 18 40 40 H 1.08995 * 109.46915 * 300.00159 * 21 19 18 41 41 H 1.08997 * 109.46907 * 60.00198 * 22 19 18 42 42 H 1.08999 * 109.46685 * 180.02562 * 22 19 18 43 43 H 1.08996 * 109.47180 * 299.99863 * 22 19 18 44 44 H 1.08005 * 126.12559 * 180.23645 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1848 -0.0006 5 7 3.9757 0.5646 -1.2527 6 6 4.2068 -0.7842 -1.3044 7 1 3.9952 -1.3340 -2.2096 8 6 4.7128 -1.4449 -0.1934 9 7 5.3732 -0.7743 0.7267 10 14 4.4567 -3.2855 -0.0042 11 1 5.5858 -4.0104 -0.6403 12 1 4.3967 -3.6312 1.4387 13 1 3.1838 -3.6782 -0.6606 14 6 4.1689 1.3872 -2.4494 15 6 5.5899 1.8872 -2.4913 16 6 6.6722 1.2409 -3.0973 17 7 7.7379 1.9802 -2.9258 18 7 7.3669 3.1224 -2.2046 19 6 8.2575 4.2123 -1.7984 20 6 8.5501 4.1007 -0.3009 21 6 9.5680 4.1191 -2.5825 22 6 7.5844 5.5556 -2.0879 23 6 6.0429 3.0441 -1.9552 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8465 -0.8900 29 1 3.8514 0.5683 0.8410 30 1 3.9785 2.1766 0.0889 31 1 5.7265 -1.2359 1.5033 32 1 3.9679 0.7888 -3.3379 33 1 3.4858 2.2361 -2.4209 34 1 6.6347 0.2948 -3.6168 35 1 9.0296 3.1437 -0.0947 36 1 9.2131 4.9114 0.0012 37 1 7.6165 4.1670 0.2577 38 1 9.3595 4.1987 -3.6494 39 1 10.2305 4.9304 -2.2806 40 1 10.0474 3.1622 -2.3764 41 1 6.6508 5.6219 -1.5293 42 1 8.2473 6.3665 -1.7861 43 1 7.3760 5.6351 -3.1547 44 1 5.4515 3.7728 -1.4207 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000453596436.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:49 Heat of formation + Delta-G solvation = 35.343045 kcal Electronic energy + Delta-G solvation = -23169.448303 eV Core-core repulsion = 19931.032345 eV Total energy + Delta-G solvation = -3238.415958 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.98446 -38.78252 -37.73987 -36.79441 -33.46935 -31.62387 -31.34643 -29.85426 -28.33097 -28.30445 -27.08365 -26.70104 -24.69734 -23.17848 -22.22706 -20.74154 -19.95117 -18.54233 -17.60620 -17.19537 -16.65252 -16.42724 -16.03862 -15.52052 -15.40988 -15.33233 -15.09963 -14.87521 -14.42381 -14.18564 -13.66604 -13.40264 -13.24106 -13.14499 -13.06919 -13.03780 -12.72623 -12.71861 -12.56466 -12.34524 -12.21951 -12.14008 -12.05987 -11.86020 -11.80406 -11.45661 -11.17933 -10.38040 -10.28247 -10.04132 -9.04838 -8.42125 -7.68079 -5.17988 1.21033 1.47213 1.50353 1.59977 1.80644 2.15069 2.65010 3.26636 3.45104 3.56497 3.84086 3.95433 3.96226 4.09438 4.22851 4.45919 4.58816 4.59073 4.61626 4.63320 4.69491 4.73273 4.74157 4.80994 4.83466 4.85784 4.86746 4.91790 5.00776 5.05745 5.08466 5.12580 5.27160 5.28899 5.39301 5.55701 5.79334 5.90342 6.00499 6.47244 6.54330 6.72862 7.02214 7.33733 8.05539 8.53241 9.30204 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018072 B = 0.005318 C = 0.004661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.986901 B = 5263.984659 C = 6005.351478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.401 6.401 3 C 0.055 3.945 4 C 0.145 3.855 5 N -0.579 5.579 6 C -0.224 4.224 7 H 0.049 0.951 8 C -0.034 4.034 9 N -0.918 5.918 10 Si 0.942 3.058 11 H -0.292 1.292 12 H -0.298 1.298 13 H -0.276 1.276 14 C 0.216 3.784 15 C -0.240 4.240 16 C 0.042 3.958 17 N -0.331 5.331 18 N -0.365 5.365 19 C 0.169 3.831 20 C -0.153 4.153 21 C -0.135 4.135 22 C -0.149 4.149 23 C 0.051 3.949 24 H 0.081 0.919 25 H 0.046 0.954 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.043 0.957 29 H 0.067 0.933 30 H 0.045 0.955 31 H 0.241 0.759 32 H 0.046 0.954 33 H 0.062 0.938 34 H 0.168 0.832 35 H 0.034 0.966 36 H 0.107 0.893 37 H 0.055 0.945 38 H 0.055 0.945 39 H 0.101 0.899 40 H 0.044 0.956 41 H 0.067 0.933 42 H 0.107 0.893 43 H 0.060 0.940 44 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.186 14.854 -3.357 15.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.320 6.320 3 C -0.023 4.023 4 C 0.018 3.982 5 N -0.298 5.298 6 C -0.355 4.355 7 H 0.067 0.933 8 C -0.230 4.230 9 N -0.565 5.565 10 Si 0.772 3.228 11 H -0.220 1.220 12 H -0.225 1.225 13 H -0.201 1.201 14 C 0.089 3.911 15 C -0.254 4.254 16 C -0.143 4.143 17 N -0.153 5.153 18 N -0.150 5.150 19 C 0.087 3.913 20 C -0.211 4.211 21 C -0.193 4.193 22 C -0.207 4.207 23 C -0.096 4.096 24 H 0.099 0.901 25 H 0.064 0.936 26 H 0.063 0.937 27 H 0.064 0.936 28 H 0.061 0.939 29 H 0.085 0.915 30 H 0.063 0.937 31 H 0.050 0.950 32 H 0.065 0.935 33 H 0.080 0.920 34 H 0.185 0.815 35 H 0.053 0.947 36 H 0.126 0.874 37 H 0.075 0.925 38 H 0.074 0.926 39 H 0.120 0.880 40 H 0.064 0.936 41 H 0.086 0.914 42 H 0.125 0.875 43 H 0.079 0.921 44 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 1.327 14.851 -3.410 15.295 hybrid contribution -1.038 -1.475 0.598 1.900 sum 0.289 13.376 -2.812 13.671 Atomic orbital electron populations 1.22816 0.81549 1.02575 1.00088 1.88129 1.19655 1.28973 1.95204 1.23243 0.96706 0.83876 0.98520 1.20865 0.89390 0.96211 0.91699 1.43969 1.75152 1.03586 1.07112 1.19005 1.33491 0.84323 0.98701 0.93301 1.25431 0.97890 1.00003 0.99689 1.70119 1.37867 1.35780 1.12695 0.85672 0.77681 0.83312 0.76108 1.21980 1.22491 1.20134 1.19325 0.88637 0.93328 0.89777 1.21241 1.00076 0.96358 1.07703 1.23689 0.90867 0.99208 1.00571 1.77054 1.23795 0.97177 1.17314 1.49008 1.06494 1.16810 1.42697 1.21031 0.90407 0.84520 0.95309 1.22227 1.02742 1.02706 0.93460 1.21850 0.94797 1.02903 0.99711 1.22190 1.01973 0.93909 1.02622 1.22295 0.85658 0.99864 1.01753 0.90089 0.93570 0.93702 0.93555 0.93852 0.91486 0.93732 0.94972 0.93535 0.91988 0.81488 0.94687 0.87393 0.92542 0.92614 0.87990 0.93638 0.91361 0.87467 0.92135 0.80158 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 11.01 113.37 1.25 2.06 16 2 O -0.40 -17.23 10.44 -148.98 -1.56 -18.79 16 3 C 0.06 2.12 6.28 71.98 0.45 2.58 16 4 C 0.14 6.69 5.63 86.38 0.49 7.18 16 5 N -0.58 -28.21 2.39 -706.37 -1.69 -29.90 16 6 C -0.22 -12.44 9.28 84.03 0.78 -11.66 16 7 H 0.05 2.75 7.92 -2.91 -0.02 2.73 16 8 C -0.03 -1.98 4.91 84.86 0.42 -1.57 16 9 N -0.92 -55.42 11.35 21.65 0.25 -55.18 16 10 Si 0.94 47.63 29.61 68.60 2.03 49.66 16 11 H -0.29 -14.64 7.11 99.48 0.71 -13.93 16 12 H -0.30 -15.19 7.11 99.48 0.71 -14.48 16 13 H -0.28 -13.65 7.11 99.48 0.71 -12.94 16 14 C 0.22 8.85 6.17 85.63 0.53 9.38 16 15 C -0.24 -9.78 5.68 -20.15 -0.11 -9.90 16 16 C 0.04 1.78 11.96 85.24 1.02 2.80 16 17 N -0.33 -13.58 11.66 -57.03 -0.66 -14.24 16 18 N -0.37 -12.63 3.43 -307.83 -1.06 -13.68 16 19 C 0.17 4.22 1.24 3.61 0.00 4.22 16 20 C -0.15 -3.70 8.73 71.98 0.63 -3.08 16 21 C -0.14 -3.10 8.09 71.98 0.58 -2.51 16 22 C -0.15 -2.60 8.29 71.98 0.60 -2.01 16 23 C 0.05 1.81 10.51 83.54 0.88 2.69 16 24 H 0.08 2.34 8.14 -2.38 -0.02 2.32 16 25 H 0.05 1.22 8.14 -2.39 -0.02 1.20 16 26 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.04 1.51 8.12 -2.38 -0.02 1.49 16 29 H 0.07 3.71 5.34 -2.39 -0.01 3.70 16 30 H 0.04 1.90 8.11 -2.39 -0.02 1.88 16 31 H 0.24 14.37 8.31 -92.71 -0.77 13.60 16 32 H 0.05 1.91 8.04 -2.39 -0.02 1.89 16 33 H 0.06 2.19 8.04 -2.39 -0.02 2.17 16 34 H 0.17 6.94 8.06 -2.91 -0.02 6.91 16 35 H 0.03 1.05 8.14 -2.38 -0.02 1.03 16 36 H 0.11 1.75 8.14 -2.39 -0.02 1.73 16 37 H 0.06 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 40 H 0.04 1.26 8.04 -2.39 -0.02 1.25 16 41 H 0.07 1.16 7.36 -2.39 -0.02 1.14 16 42 H 0.11 1.20 8.14 -2.39 -0.02 1.18 16 43 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 44 H 0.18 5.25 7.55 -2.91 -0.02 5.23 16 Total: -1.00 -71.50 362.44 5.76 -65.74 By element: Atomic # 1 Polarization: 15.26 SS G_CDS: 0.94 Total: 16.20 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 7.51 Total: 0.18 kcal Atomic # 7 Polarization: -109.83 SS G_CDS: -3.17 Total: -112.99 kcal Atomic # 8 Polarization: -17.23 SS G_CDS: -1.56 Total: -18.79 kcal Atomic # 14 Polarization: 47.63 SS G_CDS: 2.03 Total: 49.66 kcal Total: -71.50 5.76 -65.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453596436.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.083 kcal (2) G-P(sol) polarization free energy of solvation -71.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.740 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds