Wall clock time and date at job start Tue Mar 31 2020 05:33:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00042 * 2 1 4 4 C 1.53003 * 109.47240 * 179.97438 * 3 2 1 5 5 N 1.46493 * 109.47212 * 63.76476 * 4 3 2 6 6 C 1.36944 * 120.00054 * 266.86612 * 5 4 3 7 7 H 1.07998 * 120.00164 * 143.29319 * 6 5 4 8 8 C 1.38809 * 119.99936 * 323.30211 * 6 5 4 9 9 N 1.31610 * 120.00356 * 160.03173 * 8 6 5 10 10 Si 1.86806 * 120.00059 * 340.02708 * 8 6 5 11 11 H 1.48499 * 109.46951 * 95.25572 * 10 8 6 12 12 H 1.48496 * 109.47602 * 215.26028 * 10 8 6 13 13 H 1.48502 * 109.46901 * 335.26216 * 10 8 6 14 14 C 1.46498 * 120.00381 * 86.86612 * 5 4 3 15 15 C 1.50697 * 109.47320 * 89.99916 * 14 5 4 16 16 C 1.39864 * 126.04109 * 270.00782 * 15 14 5 17 17 N 1.30837 * 108.20624 * 179.73631 * 16 15 14 18 18 N 1.40091 * 108.20262 * 0.40609 * 17 16 15 19 19 C 1.46493 * 126.03868 * 179.85747 * 18 17 16 20 20 C 1.53001 * 109.46845 * 304.68413 * 19 18 17 21 21 C 1.52992 * 109.47308 * 65.00353 * 20 19 18 22 22 C 1.53012 * 109.46853 * 185.00190 * 20 19 18 23 23 C 1.34948 * 107.92288 * 359.58589 * 18 17 16 24 24 H 1.09000 * 109.47142 * 59.99899 * 1 2 3 25 25 H 1.09000 * 109.46830 * 179.97438 * 1 2 3 26 26 H 1.08998 * 109.47403 * 299.99660 * 1 2 3 27 27 H 1.09003 * 109.46986 * 60.00121 * 3 2 1 28 28 H 1.08998 * 109.47625 * 300.00178 * 3 2 1 29 29 H 1.08997 * 109.46988 * 303.76122 * 4 3 2 30 30 H 1.09000 * 109.46869 * 183.76447 * 4 3 2 31 31 H 0.97007 * 120.00306 * 179.97438 * 9 8 6 32 32 H 1.09004 * 109.46558 * 330.00017 * 14 5 4 33 33 H 1.08994 * 109.46996 * 210.00292 * 14 5 4 34 34 H 1.08008 * 125.90156 * 359.97438 * 16 15 14 35 35 H 1.09004 * 109.47385 * 184.68155 * 19 18 17 36 36 H 1.09002 * 109.47492 * 64.68131 * 19 18 17 37 37 H 1.08999 * 109.47216 * 304.99480 * 20 19 18 38 38 H 1.09006 * 109.47362 * 180.02562 * 21 20 19 39 39 H 1.09001 * 109.47113 * 299.99607 * 21 20 19 40 40 H 1.08998 * 109.47915 * 59.99925 * 21 20 19 41 41 H 1.08997 * 109.46664 * 59.99957 * 22 20 19 42 42 H 1.08996 * 109.46657 * 179.97438 * 22 20 19 43 43 H 1.08999 * 109.46630 * 299.99649 * 22 20 19 44 44 H 1.07996 * 126.12923 * 180.22854 * 23 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1847 0.0006 5 7 3.9746 0.5373 -1.2379 6 6 4.1574 -0.8194 -1.2738 7 1 3.8980 -1.3760 -2.1622 8 6 4.6760 -1.4793 -0.1682 9 7 4.4958 -2.7758 -0.0312 10 14 5.6299 -0.5272 1.1253 11 1 4.7167 -0.1448 2.2321 12 1 6.7249 -1.3770 1.6583 13 1 6.2064 0.6971 0.5138 14 6 4.2181 1.3411 -2.4382 15 6 5.6568 1.7891 -2.4594 16 6 6.1595 2.9691 -1.9018 17 7 7.4497 3.0052 -2.1161 18 7 7.8078 1.8519 -2.8261 19 6 9.1578 1.4989 -3.2723 20 6 9.7299 2.6388 -4.1175 21 6 9.9047 3.8830 -3.2445 22 6 11.0872 2.2202 -4.6864 23 6 6.6906 1.1207 -3.0213 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8465 -0.8899 29 1 3.8522 0.5868 0.8552 30 1 3.9785 2.1783 0.0681 31 1 4.8585 -3.2370 0.7413 32 1 3.5657 2.2143 -2.4292 33 1 4.0110 0.7420 -3.3249 34 1 5.5830 3.7191 -1.3806 35 1 9.1164 0.5885 -3.8703 36 1 9.7961 1.3346 -2.4042 37 1 9.0462 2.8625 -4.9364 38 1 10.3118 4.6952 -3.8467 39 1 8.9377 4.1812 -2.8392 40 1 10.5884 3.6593 -2.4257 41 1 10.9627 1.3338 -5.3084 42 1 11.4946 3.0320 -5.2889 43 1 11.7709 1.9965 -3.8676 44 1 6.6319 0.1721 -3.5342 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000453599034.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:52 Heat of formation + Delta-G solvation = 59.803901 kcal Electronic energy + Delta-G solvation = -22897.691422 eV Core-core repulsion = 19660.336166 eV Total energy + Delta-G solvation = -3237.355256 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.64928 -37.34439 -36.43955 -35.32925 -31.90506 -31.36602 -30.43309 -28.46615 -27.16812 -26.64952 -25.64767 -24.79995 -22.74709 -21.10815 -20.90237 -19.92093 -19.24411 -16.76101 -16.41352 -15.82298 -15.40949 -15.23950 -14.82649 -14.64885 -14.11578 -13.95208 -13.72988 -13.30088 -13.12400 -12.85854 -12.71459 -12.34744 -12.31261 -12.08066 -11.98463 -11.66351 -11.48125 -11.19217 -11.06880 -10.91428 -10.82505 -10.73841 -10.56221 -10.26010 -9.76837 -9.65398 -9.40436 -8.85208 -8.80677 -8.38980 -7.72260 -6.71735 -5.80085 -3.19529 2.47404 2.96923 3.41318 3.46017 3.57025 3.65896 4.59022 4.61927 4.69039 4.70916 4.93428 5.20056 5.21826 5.35130 5.47235 5.49801 5.55483 5.60288 5.66247 5.75166 5.78601 5.81550 5.85641 5.97070 5.98213 6.04482 6.07809 6.14529 6.16913 6.21411 6.29172 6.36545 6.44877 6.53762 6.70146 6.87669 6.91333 7.31114 7.61395 8.01165 8.22813 8.27329 8.53795 9.12540 9.89719 10.27267 11.36197 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022450 B = 0.004823 C = 0.004422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.926692 B = 5804.181342 C = 6330.668635 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.349 6.349 3 C 0.047 3.953 4 C 0.136 3.864 5 N -0.591 5.591 6 C -0.240 4.240 7 H 0.077 0.923 8 C 0.040 3.960 9 N -0.905 5.905 10 Si 0.874 3.126 11 H -0.290 1.290 12 H -0.309 1.309 13 H -0.266 1.266 14 C 0.219 3.781 15 C -0.231 4.231 16 C 0.045 3.955 17 N -0.308 5.308 18 N -0.379 5.379 19 C 0.140 3.860 20 C -0.105 4.105 21 C -0.157 4.157 22 C -0.145 4.145 23 C 0.064 3.936 24 H 0.029 0.971 25 H 0.078 0.922 26 H 0.025 0.975 27 H 0.027 0.973 28 H 0.038 0.962 29 H 0.060 0.940 30 H 0.052 0.948 31 H 0.258 0.742 32 H 0.045 0.955 33 H 0.057 0.943 34 H 0.170 0.830 35 H 0.091 0.909 36 H 0.076 0.924 37 H 0.072 0.928 38 H 0.044 0.956 39 H 0.091 0.909 40 H 0.048 0.952 41 H 0.056 0.944 42 H 0.058 0.942 43 H 0.057 0.943 44 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.567 11.303 -6.816 13.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C -0.033 4.033 4 C 0.010 3.990 5 N -0.311 5.311 6 C -0.369 4.369 7 H 0.094 0.906 8 C -0.160 4.160 9 N -0.548 5.548 10 Si 0.706 3.294 11 H -0.218 1.218 12 H -0.238 1.238 13 H -0.191 1.191 14 C 0.092 3.908 15 C -0.244 4.244 16 C -0.141 4.141 17 N -0.130 5.130 18 N -0.163 5.163 19 C 0.019 3.981 20 C -0.124 4.124 21 C -0.214 4.214 22 C -0.203 4.203 23 C -0.081 4.081 24 H 0.048 0.952 25 H 0.096 0.904 26 H 0.044 0.956 27 H 0.046 0.954 28 H 0.056 0.944 29 H 0.078 0.922 30 H 0.071 0.929 31 H 0.068 0.932 32 H 0.063 0.937 33 H 0.076 0.924 34 H 0.187 0.813 35 H 0.110 0.890 36 H 0.095 0.905 37 H 0.091 0.909 38 H 0.064 0.936 39 H 0.110 0.890 40 H 0.067 0.933 41 H 0.075 0.925 42 H 0.077 0.923 43 H 0.076 0.924 44 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 5.916 11.573 -6.614 14.584 hybrid contribution -0.315 0.076 0.951 1.005 sum 5.601 11.649 -5.663 14.112 Atomic orbital electron populations 1.22642 0.83854 1.01823 0.98286 1.88291 1.16869 1.26668 1.94802 1.23271 0.97487 0.84957 0.97578 1.21244 0.90073 0.96389 0.91302 1.44137 1.75764 1.04290 1.06941 1.18622 1.35709 0.80265 1.02328 0.90574 1.25313 0.98011 0.94772 0.97892 1.69840 1.46611 1.08573 1.29734 0.86987 0.80007 0.80354 0.82079 1.21835 1.23800 1.19119 1.19263 0.87323 0.93528 0.90735 1.21241 0.99803 0.96293 1.07104 1.23655 0.91909 0.98444 1.00060 1.76968 1.14678 1.05172 1.16177 1.48448 1.06811 1.16673 1.44341 1.21706 0.80052 0.97789 0.98596 1.21367 0.97056 0.95817 0.98150 1.22069 1.04410 0.96093 0.98871 1.21799 0.96238 1.01403 1.00877 1.22324 0.85810 0.97758 1.02204 0.95206 0.90381 0.95611 0.95446 0.94421 0.92192 0.92949 0.93184 0.93660 0.92448 0.81309 0.89028 0.90527 0.90907 0.93641 0.89030 0.93270 0.92521 0.92252 0.92435 0.81473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 11.01 101.05 1.11 1.64 16 2 O -0.35 -7.77 10.27 -35.23 -0.36 -8.13 16 3 C 0.05 0.90 6.29 37.16 0.23 1.14 16 4 C 0.14 2.97 4.78 -4.04 -0.02 2.95 16 5 N -0.59 -13.69 2.05 -174.62 -0.36 -14.05 16 6 C -0.24 -6.63 9.58 -15.06 -0.14 -6.77 16 7 H 0.08 2.27 8.06 -52.49 -0.42 1.85 16 8 C 0.04 1.16 5.33 -17.44 -0.09 1.06 16 9 N -0.91 -28.24 13.97 55.49 0.78 -27.46 16 10 Si 0.87 23.32 24.83 -169.99 -4.22 19.09 16 11 H -0.29 -7.64 6.69 56.52 0.38 -7.26 16 12 H -0.31 -8.49 7.11 56.52 0.40 -8.09 16 13 H -0.27 -7.09 7.11 56.52 0.40 -6.69 16 14 C 0.22 4.20 6.16 -5.20 -0.03 4.17 16 15 C -0.23 -4.32 5.68 -105.06 -0.60 -4.92 16 16 C 0.05 0.80 11.96 -17.37 -0.21 0.59 16 17 N -0.31 -5.51 9.64 30.62 0.30 -5.22 16 18 N -0.38 -6.35 3.68 -61.37 -0.23 -6.58 16 19 C 0.14 1.81 5.96 -4.04 -0.02 1.78 16 20 C -0.10 -1.16 3.12 -90.62 -0.28 -1.44 16 21 C -0.16 -1.89 8.92 37.15 0.33 -1.56 16 22 C -0.15 -1.25 9.19 37.16 0.34 -0.90 16 23 C 0.06 1.16 11.36 -17.22 -0.20 0.96 16 24 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 25 H 0.08 1.24 8.14 -51.93 -0.42 0.82 16 26 H 0.03 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.03 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 1.50 3.12 -51.93 -0.16 1.33 16 30 H 0.05 1.01 8.10 -51.93 -0.42 0.59 16 31 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 32 H 0.05 0.76 8.07 -51.93 -0.42 0.34 16 33 H 0.06 1.10 8.04 -51.93 -0.42 0.68 16 34 H 0.17 2.55 8.06 -52.48 -0.42 2.13 16 35 H 0.09 0.99 8.07 -51.93 -0.42 0.58 16 36 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.09 1.32 5.37 -51.93 -0.28 1.04 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 42 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 44 H 0.17 2.77 8.06 -52.49 -0.42 2.34 16 LS Contribution 355.64 15.07 5.36 5.36 Total: -1.00 -33.69 355.64 -5.93 -39.62 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.62 Total: -1.33 kcal Atomic # 6 Polarization: -1.73 SS G_CDS: 0.42 Total: -1.31 kcal Atomic # 7 Polarization: -53.80 SS G_CDS: 0.49 Total: -53.31 kcal Atomic # 8 Polarization: -7.77 SS G_CDS: -0.36 Total: -8.13 kcal Atomic # 14 Polarization: 23.32 SS G_CDS: -4.22 Total: 19.09 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -33.69 -5.93 -39.62 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000453599034.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.427 kcal (2) G-P(sol) polarization free energy of solvation -33.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds