Wall clock time and date at job start Tue Mar 31 2020 05:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00074 * 2 1 4 4 C 1.52997 * 109.46974 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47307 * 65.00256 * 4 3 2 6 6 C 1.36939 * 120.00354 * 270.00157 * 5 4 3 7 7 H 1.07991 * 120.00607 * 141.45069 * 6 5 4 8 8 C 1.38816 * 119.99465 * 321.45810 * 6 5 4 9 9 N 1.31618 * 120.00058 * 338.82237 * 8 6 5 10 10 Si 1.86796 * 119.99939 * 158.82984 * 8 6 5 11 11 H 1.48503 * 109.47327 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47268 * 119.99713 * 10 8 6 13 13 H 1.48508 * 109.47081 * 239.99415 * 10 8 6 14 14 C 1.46505 * 120.00011 * 89.99365 * 5 4 3 15 15 C 1.52995 * 109.47258 * 264.71342 * 14 5 4 16 16 C 1.53000 * 109.47019 * 180.02562 * 15 14 5 17 17 C 1.53002 * 109.47380 * 180.02562 * 16 15 14 18 18 N 1.46498 * 109.47212 * 179.97438 * 17 16 15 19 19 C 1.36881 * 126.39453 * 265.01927 * 18 17 16 20 20 C 1.34670 * 106.81743 * 180.02562 * 19 18 17 21 21 N 1.34129 * 108.01747 * 359.97438 * 20 19 18 22 22 C 1.30493 * 109.25955 * 359.72720 * 21 20 19 23 23 C 1.50705 * 125.65215 * 180.29272 * 22 21 20 24 24 H 1.09009 * 109.46576 * 299.99569 * 1 2 3 25 25 H 1.09000 * 109.47125 * 59.99261 * 1 2 3 26 26 H 1.08992 * 109.47346 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46924 * 60.00482 * 3 2 1 28 28 H 1.08996 * 109.47357 * 300.00258 * 3 2 1 29 29 H 1.09000 * 109.47432 * 305.00078 * 4 3 2 30 30 H 1.09003 * 109.47326 * 184.99858 * 4 3 2 31 31 H 0.97003 * 120.00439 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.46823 * 144.71487 * 14 5 4 33 33 H 1.08995 * 109.46679 * 24.71617 * 14 5 4 34 34 H 1.08996 * 109.46999 * 60.00255 * 15 14 5 35 35 H 1.09004 * 109.47594 * 299.99927 * 15 14 5 36 36 H 1.09007 * 109.46946 * 299.99515 * 16 15 14 37 37 H 1.08995 * 109.47552 * 59.99620 * 16 15 14 38 38 H 1.09007 * 109.46283 * 299.99429 * 17 16 15 39 39 H 1.08995 * 109.47489 * 59.99090 * 17 16 15 40 40 H 1.08000 * 126.59277 * 0.03210 * 19 18 17 41 41 H 1.08003 * 125.98806 * 179.97438 * 20 19 18 42 42 H 1.08998 * 109.47237 * 270.17255 * 23 22 21 43 43 H 1.08995 * 109.46919 * 30.17659 * 23 22 21 44 44 H 1.09002 * 109.46855 * 150.16991 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0967 -0.7970 -1.3371 7 1 3.8066 -1.3100 -2.2420 8 6 4.5922 -1.5178 -0.2591 9 7 5.3199 -0.9148 0.6570 10 14 4.2264 -3.3434 -0.1088 11 1 3.3936 -3.7777 -1.2591 12 1 5.5012 -4.1050 -0.1047 13 1 3.4932 -3.5987 1.1571 14 6 4.2863 1.4007 -2.4149 15 6 3.0582 1.4883 -3.3231 16 6 3.3828 2.3611 -4.5370 17 6 2.1545 2.4493 -5.4450 18 7 2.4652 3.2856 -6.6070 19 6 2.2076 4.6236 -6.7368 20 6 2.6523 4.9897 -7.9541 21 7 3.1678 3.9048 -8.5511 22 6 3.0648 2.8817 -7.7477 23 6 3.5334 1.4806 -8.0452 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8515 0.5681 0.8409 30 1 3.9786 2.1764 0.0889 31 1 5.6665 -1.4185 1.4101 32 1 5.1164 0.9607 -2.9677 33 1 4.5623 2.4004 -2.0796 34 1 2.2282 1.9282 -2.7703 35 1 2.7821 0.4885 -3.6584 36 1 3.6591 3.3610 -4.2021 37 1 4.2128 1.9209 -5.0896 38 1 1.8779 1.4495 -5.7799 39 1 1.3248 2.8897 -4.8922 40 1 1.7382 5.2630 -6.0038 41 1 2.6024 5.9828 -8.3758 42 1 2.7278 0.9213 -8.5208 43 1 4.3930 1.5194 -8.7141 44 1 3.8184 0.9878 -7.1156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000457350481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:49 Heat of formation + Delta-G solvation = 25.605734 kcal Electronic energy + Delta-G solvation = -22399.364170 eV Core-core repulsion = 19160.525971 eV Total energy + Delta-G solvation = -3238.838200 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.08874 -37.39144 -36.23634 -34.92813 -32.49103 -31.75552 -30.96458 -29.03560 -27.29537 -26.68526 -25.69473 -24.24649 -22.73105 -21.36869 -20.87976 -20.22928 -19.61842 -17.00228 -16.74431 -15.82058 -15.49534 -15.34189 -15.04874 -14.67975 -14.28812 -14.04627 -13.85200 -13.60568 -13.39117 -13.10304 -12.91049 -12.57888 -12.40724 -12.25052 -12.06293 -11.83223 -11.47188 -11.17464 -10.90976 -10.79908 -10.71905 -10.60200 -10.41127 -9.98255 -9.94501 -9.83006 -9.68004 -9.56153 -8.82703 -8.38537 -8.35100 -6.51399 -5.71194 -3.28889 2.03279 2.77672 3.13053 3.42943 3.50960 3.53820 4.46523 4.53976 4.59133 4.65113 4.75283 4.91190 5.19005 5.23745 5.33055 5.35967 5.44575 5.48589 5.52629 5.68880 5.70692 5.73398 5.79698 5.86285 5.92303 6.02361 6.06814 6.11692 6.27573 6.32192 6.32905 6.46094 6.61015 6.68406 6.75153 6.81359 7.03933 7.18576 7.62833 7.89365 8.04219 8.09891 8.60543 9.24834 9.88540 10.44550 11.30472 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.003800 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.744372 B = 7367.025201 C = 7931.779891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.354 6.354 3 C 0.046 3.954 4 C 0.144 3.856 5 N -0.577 5.577 6 C -0.241 4.241 7 H 0.055 0.945 8 C 0.019 3.981 9 N -0.893 5.893 10 Si 0.897 3.103 11 H -0.277 1.277 12 H -0.294 1.294 13 H -0.289 1.289 14 C 0.149 3.851 15 C -0.133 4.133 16 C -0.130 4.130 17 C 0.102 3.898 18 N -0.451 5.451 19 C -0.059 4.059 20 C -0.035 4.035 21 N -0.499 5.499 22 C 0.205 3.795 23 C -0.071 4.071 24 H 0.026 0.974 25 H 0.027 0.973 26 H 0.074 0.926 27 H 0.022 0.978 28 H 0.028 0.972 29 H 0.100 0.900 30 H 0.039 0.961 31 H 0.252 0.748 32 H 0.045 0.955 33 H 0.033 0.967 34 H 0.053 0.947 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.067 0.933 38 H 0.092 0.908 39 H 0.090 0.910 40 H 0.171 0.829 41 H 0.166 0.834 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.031 8.109 -9.186 14.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.272 6.272 3 C -0.033 4.033 4 C 0.017 3.983 5 N -0.296 5.296 6 C -0.371 4.371 7 H 0.073 0.927 8 C -0.180 4.180 9 N -0.536 5.536 10 Si 0.727 3.273 11 H -0.202 1.202 12 H -0.221 1.221 13 H -0.215 1.215 14 C 0.022 3.978 15 C -0.174 4.174 16 C -0.169 4.169 17 C -0.020 4.020 18 N -0.133 5.133 19 C -0.193 4.193 20 C -0.183 4.183 21 N -0.219 5.219 22 C -0.057 4.057 23 C -0.130 4.130 24 H 0.044 0.956 25 H 0.046 0.954 26 H 0.093 0.907 27 H 0.041 0.959 28 H 0.046 0.954 29 H 0.118 0.882 30 H 0.057 0.943 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.051 0.949 34 H 0.072 0.928 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.086 0.914 38 H 0.110 0.890 39 H 0.108 0.892 40 H 0.188 0.812 41 H 0.184 0.816 42 H 0.096 0.904 43 H 0.107 0.893 44 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -7.505 7.750 -9.688 14.500 hybrid contribution -1.083 -0.439 1.102 1.606 sum -8.588 7.312 -8.585 14.175 Atomic orbital electron populations 1.22632 0.84359 1.01463 0.98327 1.88225 1.16430 1.27713 1.94794 1.23501 0.99039 0.84075 0.96725 1.21010 0.87396 0.96539 0.93367 1.43631 1.75634 1.02869 1.07485 1.18817 1.35788 0.81589 1.00911 0.92713 1.25068 0.96213 0.97648 0.99097 1.69990 1.33913 1.35763 1.13930 0.86335 0.77382 0.85754 0.77806 1.20243 1.22124 1.21542 1.20822 0.93522 0.93968 0.89488 1.22233 1.01594 0.98747 0.94833 1.21967 0.96467 1.01566 0.96918 1.22089 0.99714 0.95188 0.85017 1.45586 1.44317 1.08763 1.14644 1.22693 1.10160 0.84884 1.01525 1.22235 1.04485 0.98331 0.93222 1.70217 1.22305 0.98538 1.30794 1.23297 1.00754 0.97797 0.83854 1.20221 1.02160 0.87406 1.03197 0.95552 0.95423 0.90735 0.95947 0.95367 0.88213 0.94280 0.93812 0.93641 0.94902 0.92784 0.91831 0.91730 0.91380 0.89014 0.89187 0.81176 0.81622 0.90388 0.89294 0.90365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.48 11.01 101.05 1.11 1.59 16 2 O -0.35 -7.58 10.18 -35.23 -0.36 -7.94 16 3 C 0.05 0.89 6.28 37.16 0.23 1.13 16 4 C 0.14 3.25 5.76 -4.04 -0.02 3.23 16 5 N -0.58 -13.66 2.41 -173.24 -0.42 -14.08 16 6 C -0.24 -6.43 8.95 -15.06 -0.13 -6.56 16 7 H 0.06 1.48 7.91 -52.49 -0.42 1.06 16 8 C 0.02 0.53 4.95 -17.43 -0.09 0.45 16 9 N -0.89 -25.59 11.53 55.49 0.64 -24.95 16 10 Si 0.90 21.98 29.60 -169.99 -5.03 16.95 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 13 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 14 C 0.15 2.90 5.72 -4.04 -0.02 2.88 16 15 C -0.13 -2.08 5.51 -26.73 -0.15 -2.22 16 16 C -0.13 -1.62 5.54 -26.73 -0.15 -1.77 16 17 C 0.10 1.10 5.68 -4.04 -0.02 1.07 16 18 N -0.45 -5.47 2.75 -113.90 -0.31 -5.79 16 19 C -0.06 -0.68 11.58 -16.56 -0.19 -0.87 16 20 C -0.03 -0.44 11.87 -17.81 -0.21 -0.65 16 21 N -0.50 -7.37 11.25 -10.81 -0.12 -7.49 16 22 C 0.21 2.70 7.90 -155.42 -1.23 1.47 16 23 C -0.07 -0.72 10.04 36.01 0.36 -0.36 16 24 H 0.03 0.37 8.14 -51.92 -0.42 -0.05 16 25 H 0.03 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 27 H 0.02 0.40 8.14 -51.93 -0.42 -0.03 16 28 H 0.03 0.51 6.48 -51.93 -0.34 0.18 16 29 H 0.10 2.64 5.58 -51.93 -0.29 2.35 16 30 H 0.04 0.82 7.86 -51.93 -0.41 0.41 16 31 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 32 H 0.05 0.93 8.08 -51.93 -0.42 0.51 16 33 H 0.03 0.60 7.83 -51.93 -0.41 0.20 16 34 H 0.05 0.85 6.48 -51.93 -0.34 0.51 16 35 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 36 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 37 H 0.07 0.88 7.63 -51.93 -0.40 0.48 16 38 H 0.09 0.92 7.94 -51.93 -0.41 0.51 16 39 H 0.09 0.87 8.13 -51.93 -0.42 0.45 16 40 H 0.17 1.46 8.06 -52.49 -0.42 1.04 16 41 H 0.17 1.64 8.06 -52.48 -0.42 1.22 16 42 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 44 H 0.08 0.74 7.34 -51.93 -0.38 0.36 16 LS Contribution 360.65 15.07 5.43 5.43 Total: -1.00 -31.84 360.65 -8.26 -40.11 By element: Atomic # 1 Polarization: 5.97 SS G_CDS: -7.59 Total: -1.62 kcal Atomic # 6 Polarization: -0.11 SS G_CDS: -0.51 Total: -0.62 kcal Atomic # 7 Polarization: -52.10 SS G_CDS: -0.21 Total: -52.31 kcal Atomic # 8 Polarization: -7.58 SS G_CDS: -0.36 Total: -7.94 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -5.03 Total: 16.95 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -31.84 -8.26 -40.11 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457350481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.712 kcal (2) G-P(sol) polarization free energy of solvation -31.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds