Wall clock time and date at job start Tue Mar 31 2020 05:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.42899 * 114.00074 * 2 1 4 4 C 1.52997 * 109.46974 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.47307 * 65.00256 * 4 3 2 6 6 C 1.36939 * 120.00354 * 270.00157 * 5 4 3 7 7 H 1.07991 * 120.00607 * 141.45069 * 6 5 4 8 8 C 1.38816 * 119.99465 * 321.45810 * 6 5 4 9 9 N 1.31618 * 120.00058 * 338.82237 * 8 6 5 10 10 Si 1.86796 * 119.99939 * 158.82984 * 8 6 5 11 11 H 1.48503 * 109.47327 * 359.97438 * 10 8 6 12 12 H 1.48501 * 109.47268 * 119.99713 * 10 8 6 13 13 H 1.48508 * 109.47081 * 239.99415 * 10 8 6 14 14 C 1.46505 * 120.00011 * 89.99365 * 5 4 3 15 15 C 1.52995 * 109.47258 * 264.71342 * 14 5 4 16 16 C 1.53000 * 109.47019 * 180.02562 * 15 14 5 17 17 C 1.53002 * 109.47380 * 180.02562 * 16 15 14 18 18 N 1.46498 * 109.47212 * 179.97438 * 17 16 15 19 19 C 1.36881 * 126.39453 * 265.01927 * 18 17 16 20 20 C 1.34670 * 106.81743 * 180.02562 * 19 18 17 21 21 N 1.34129 * 108.01747 * 359.97438 * 20 19 18 22 22 C 1.30493 * 109.25955 * 359.72720 * 21 20 19 23 23 C 1.50705 * 125.65215 * 180.29272 * 22 21 20 24 24 H 1.09009 * 109.46576 * 299.99569 * 1 2 3 25 25 H 1.09000 * 109.47125 * 59.99261 * 1 2 3 26 26 H 1.08992 * 109.47346 * 179.97438 * 1 2 3 27 27 H 1.09000 * 109.46924 * 60.00482 * 3 2 1 28 28 H 1.08996 * 109.47357 * 300.00258 * 3 2 1 29 29 H 1.09000 * 109.47432 * 305.00078 * 4 3 2 30 30 H 1.09003 * 109.47326 * 184.99858 * 4 3 2 31 31 H 0.97003 * 120.00439 * 180.02562 * 9 8 6 32 32 H 1.09005 * 109.46823 * 144.71487 * 14 5 4 33 33 H 1.08995 * 109.46679 * 24.71617 * 14 5 4 34 34 H 1.08996 * 109.46999 * 60.00255 * 15 14 5 35 35 H 1.09004 * 109.47594 * 299.99927 * 15 14 5 36 36 H 1.09007 * 109.46946 * 299.99515 * 16 15 14 37 37 H 1.08995 * 109.47552 * 59.99620 * 16 15 14 38 38 H 1.09007 * 109.46283 * 299.99429 * 17 16 15 39 39 H 1.08995 * 109.47489 * 59.99090 * 17 16 15 40 40 H 1.08000 * 126.59277 * 0.03210 * 19 18 17 41 41 H 1.08003 * 125.98806 * 179.97438 * 20 19 18 42 42 H 1.08998 * 109.47237 * 270.17255 * 23 22 21 43 43 H 1.08995 * 109.46919 * 30.17659 * 23 22 21 44 44 H 1.09002 * 109.46855 * 150.16991 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 7 3.9757 0.5644 -1.2528 6 6 4.0967 -0.7970 -1.3371 7 1 3.8066 -1.3100 -2.2420 8 6 4.5922 -1.5178 -0.2591 9 7 5.3199 -0.9148 0.6570 10 14 4.2264 -3.3434 -0.1088 11 1 3.3936 -3.7777 -1.2591 12 1 5.5012 -4.1050 -0.1047 13 1 3.4932 -3.5987 1.1571 14 6 4.2863 1.4007 -2.4149 15 6 3.0582 1.4883 -3.3231 16 6 3.3828 2.3611 -4.5370 17 6 2.1545 2.4493 -5.4450 18 7 2.4652 3.2856 -6.6070 19 6 2.2076 4.6236 -6.7368 20 6 2.6523 4.9897 -7.9541 21 7 3.1678 3.9048 -8.5511 22 6 3.0648 2.8817 -7.7477 23 6 3.5334 1.4806 -8.0452 24 1 -0.3633 0.5138 0.8901 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 1.6887 1.8463 0.8900 28 1 1.6886 1.8464 -0.8899 29 1 3.8515 0.5681 0.8409 30 1 3.9786 2.1764 0.0889 31 1 5.6665 -1.4185 1.4101 32 1 5.1164 0.9607 -2.9677 33 1 4.5623 2.4004 -2.0796 34 1 2.2282 1.9282 -2.7703 35 1 2.7821 0.4885 -3.6584 36 1 3.6591 3.3610 -4.2021 37 1 4.2128 1.9209 -5.0896 38 1 1.8779 1.4495 -5.7799 39 1 1.3248 2.8897 -4.8922 40 1 1.7382 5.2630 -6.0038 41 1 2.6024 5.9828 -8.3758 42 1 2.7278 0.9213 -8.5208 43 1 4.3930 1.5194 -8.7141 44 1 3.8184 0.9878 -7.1156 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000457350481.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:48 Heat of formation + Delta-G solvation = 7.797814 kcal Electronic energy + Delta-G solvation = -22400.136380 eV Core-core repulsion = 19160.525971 eV Total energy + Delta-G solvation = -3239.610409 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.99266 -38.95095 -37.60052 -36.28397 -33.95837 -32.68322 -32.55720 -30.51722 -28.61399 -27.65983 -27.10716 -25.83093 -24.09857 -22.31930 -22.21067 -21.85138 -20.56494 -18.64359 -17.86000 -17.34522 -16.72271 -16.59420 -16.37510 -16.26428 -15.60800 -15.40787 -15.19724 -14.92902 -14.66661 -14.12569 -13.89103 -13.74945 -13.54468 -13.38680 -13.20333 -13.17421 -12.97461 -12.77136 -12.55297 -12.35080 -12.27528 -12.08880 -11.91213 -11.81826 -11.48703 -11.28705 -10.92866 -10.58077 -10.38309 -10.26437 -9.25293 -8.45330 -7.72439 -5.33792 1.13485 1.46549 1.51022 1.59038 1.90538 2.19405 2.58253 3.22636 3.37911 3.62536 3.68840 3.75286 3.94636 3.98995 4.24352 4.32155 4.43242 4.49276 4.53634 4.58042 4.62122 4.63744 4.70310 4.73835 4.78333 4.84430 4.85215 4.88047 4.94554 4.95651 5.00730 5.05429 5.20576 5.36694 5.47651 5.61975 5.74617 5.82603 5.88731 6.30000 6.51372 6.69458 7.18108 7.28484 7.97120 8.47724 9.23839 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019885 B = 0.003800 C = 0.003529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.744372 B = 7367.025201 C = 7931.779891 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.397 6.397 3 C 0.056 3.944 4 C 0.141 3.859 5 N -0.593 5.593 6 C -0.234 4.234 7 H 0.048 0.952 8 C -0.029 4.029 9 N -0.924 5.924 10 Si 0.947 3.053 11 H -0.270 1.270 12 H -0.295 1.295 13 H -0.296 1.296 14 C 0.145 3.855 15 C -0.113 4.113 16 C -0.117 4.117 17 C 0.107 3.893 18 N -0.454 5.454 19 C -0.056 4.056 20 C -0.058 4.058 21 N -0.536 5.536 22 C 0.189 3.811 23 C -0.070 4.070 24 H 0.044 0.956 25 H 0.045 0.955 26 H 0.080 0.920 27 H 0.043 0.957 28 H 0.047 0.953 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.247 0.753 32 H 0.028 0.972 33 H 0.044 0.956 34 H 0.060 0.940 35 H 0.049 0.951 36 H 0.067 0.933 37 H 0.061 0.939 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.201 0.799 41 H 0.184 0.816 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.865 8.923 -9.801 16.523 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.316 6.316 3 C -0.023 4.023 4 C 0.014 3.986 5 N -0.314 5.314 6 C -0.365 4.365 7 H 0.066 0.934 8 C -0.226 4.226 9 N -0.569 5.569 10 Si 0.776 3.224 11 H -0.194 1.194 12 H -0.222 1.222 13 H -0.223 1.223 14 C 0.020 3.980 15 C -0.153 4.153 16 C -0.156 4.156 17 C -0.014 4.014 18 N -0.136 5.136 19 C -0.189 4.189 20 C -0.205 4.205 21 N -0.256 5.256 22 C -0.073 4.073 23 C -0.128 4.128 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.099 0.901 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.047 0.953 33 H 0.062 0.938 34 H 0.079 0.921 35 H 0.068 0.932 36 H 0.085 0.915 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.127 0.873 40 H 0.218 0.782 41 H 0.201 0.799 42 H 0.109 0.891 43 H 0.108 0.892 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -9.361 8.582 -10.328 16.369 hybrid contribution -0.525 -0.613 1.261 1.497 sum -9.886 7.970 -9.068 15.603 Atomic orbital electron populations 1.22819 0.81634 1.02571 1.00065 1.88144 1.19529 1.28782 1.95181 1.23273 0.96524 0.83976 0.98510 1.20933 0.89983 0.96037 0.91601 1.43825 1.76256 1.02421 1.08855 1.18942 1.33968 0.83277 1.00282 0.93441 1.25620 0.96912 1.00594 0.99454 1.70103 1.35594 1.36692 1.14506 0.85544 0.76965 0.82433 0.77420 1.19427 1.22246 1.22302 1.20955 0.94882 0.93553 0.88656 1.21883 0.99498 0.98767 0.95152 1.21766 0.97219 1.00755 0.95813 1.22066 0.99079 0.95843 0.84458 1.45686 1.44154 1.09156 1.14590 1.23200 1.09171 0.84852 1.01659 1.22683 1.04937 0.98832 0.94018 1.70189 1.23576 0.99694 1.32163 1.23773 1.00892 0.98499 0.84174 1.20300 1.02654 0.86297 1.03597 0.93731 0.93600 0.90095 0.93906 0.93515 0.92207 0.93132 0.94422 0.95319 0.93784 0.92141 0.93182 0.91464 0.92050 0.88162 0.87303 0.78227 0.79912 0.89057 0.89202 0.89860 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.75 11.01 113.37 1.25 2.00 16 2 O -0.40 -16.41 10.18 -148.98 -1.52 -17.93 16 3 C 0.06 2.07 6.28 71.98 0.45 2.52 16 4 C 0.14 6.32 5.76 86.38 0.50 6.81 16 5 N -0.59 -27.87 2.41 -702.00 -1.69 -29.56 16 6 C -0.23 -12.49 8.95 84.03 0.75 -11.74 16 7 H 0.05 2.56 7.91 -2.91 -0.02 2.54 16 8 C -0.03 -1.64 4.95 84.86 0.42 -1.22 16 9 N -0.92 -54.12 11.53 21.65 0.25 -53.87 16 10 Si 0.95 45.65 29.60 68.60 2.03 47.68 16 11 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 12 H -0.30 -14.14 7.11 99.48 0.71 -13.43 16 13 H -0.30 -14.47 7.11 99.48 0.71 -13.76 16 14 C 0.15 5.51 5.72 86.38 0.49 6.00 16 15 C -0.11 -3.26 5.51 30.59 0.17 -3.09 16 16 C -0.12 -2.61 5.54 30.59 0.17 -2.44 16 17 C 0.11 1.97 5.68 86.38 0.49 2.46 16 18 N -0.45 -9.91 2.75 -514.28 -1.41 -11.32 16 19 C -0.06 -1.14 11.58 83.09 0.96 -0.17 16 20 C -0.06 -1.37 11.87 83.52 0.99 -0.38 16 21 N -0.54 -15.35 11.25 -188.13 -2.12 -17.47 16 22 C 0.19 4.71 7.90 138.13 1.09 5.80 16 23 C -0.07 -1.33 10.04 71.24 0.72 -0.61 16 24 H 0.04 1.13 8.14 -2.38 -0.02 1.11 16 25 H 0.05 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.08 2.22 8.14 -2.39 -0.02 2.20 16 27 H 0.04 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 1.54 6.48 -2.39 -0.02 1.53 16 29 H 0.06 3.22 5.58 -2.39 -0.01 3.21 16 30 H 0.05 2.07 7.86 -2.39 -0.02 2.05 16 31 H 0.25 14.10 8.31 -92.71 -0.77 13.33 16 32 H 0.03 1.16 8.08 -2.38 -0.02 1.14 16 33 H 0.04 1.56 7.83 -2.39 -0.02 1.54 16 34 H 0.06 1.69 6.48 -2.39 -0.02 1.68 16 35 H 0.05 1.60 8.14 -2.38 -0.02 1.58 16 36 H 0.07 1.50 8.14 -2.38 -0.02 1.48 16 37 H 0.06 1.48 7.63 -2.39 -0.02 1.46 16 38 H 0.10 1.71 7.94 -2.38 -0.02 1.69 16 39 H 0.11 1.64 8.13 -2.39 -0.02 1.62 16 40 H 0.20 2.68 8.06 -2.91 -0.02 2.66 16 41 H 0.18 3.37 8.06 -2.91 -0.02 3.34 16 42 H 0.09 1.45 8.14 -2.39 -0.02 1.43 16 43 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 44 H 0.08 1.46 7.34 -2.39 -0.02 1.44 16 Total: -1.00 -69.27 360.65 4.95 -64.32 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: 0.95 Total: 12.21 kcal Atomic # 6 Polarization: -2.51 SS G_CDS: 8.45 Total: 5.94 kcal Atomic # 7 Polarization: -107.25 SS G_CDS: -4.97 Total: -112.22 kcal Atomic # 8 Polarization: -16.41 SS G_CDS: -1.52 Total: -17.93 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -69.27 4.95 -64.32 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000457350481.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.118 kcal (2) G-P(sol) polarization free energy of solvation -69.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.945 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.320 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds