Wall clock time and date at job start Tue Mar 31 2020 05:34:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99572 * 2 1 4 4 C 1.53002 * 109.46992 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46982 * 179.97438 * 4 3 2 6 6 C 1.34946 * 126.03394 * 124.99860 * 5 4 3 7 7 C 1.35321 * 107.74801 * 180.02562 * 6 5 4 8 8 C 1.50701 * 126.04339 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.47054 * 89.99997 * 8 7 6 10 10 C 1.46898 * 110.99673 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47006 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47164 * 299.99955 * 11 10 9 13 13 C 1.52999 * 109.46623 * 59.99856 * 11 10 9 14 14 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99944 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46873 * 120.00118 * 18 16 14 21 21 H 1.48497 * 109.47510 * 240.00153 * 18 16 14 22 22 C 1.39875 * 107.91651 * 0.26101 * 7 6 5 23 23 N 1.30838 * 108.20211 * 359.55955 * 22 7 6 24 24 H 1.08999 * 109.46877 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47075 * 299.99562 * 1 2 3 26 26 H 1.08994 * 109.47337 * 59.99783 * 1 2 3 27 27 H 1.09004 * 109.47096 * 60.00178 * 3 2 1 28 28 H 1.09006 * 109.47573 * 299.99981 * 3 2 1 29 29 H 1.08998 * 109.46808 * 59.99983 * 4 3 2 30 30 H 1.09004 * 109.46941 * 299.99755 * 4 3 2 31 31 H 1.07999 * 126.13000 * 0.04160 * 6 5 4 32 32 H 1.08993 * 109.46849 * 329.99960 * 8 7 6 33 33 H 1.08995 * 109.46627 * 209.99296 * 8 7 6 34 34 H 1.00906 * 110.99345 * 303.95214 * 9 8 7 35 35 H 1.09001 * 109.47062 * 59.99745 * 10 9 8 36 36 H 1.08993 * 109.47084 * 299.99192 * 10 9 8 37 37 H 1.09000 * 109.47140 * 60.00051 * 12 11 10 38 38 H 1.09001 * 109.47230 * 179.97438 * 12 11 10 39 39 H 1.09001 * 109.47375 * 300.00034 * 12 11 10 40 40 H 1.09001 * 109.47362 * 60.00551 * 13 11 10 41 41 H 1.09002 * 109.46716 * 179.97438 * 13 11 10 42 42 H 1.09000 * 109.47486 * 299.99829 * 13 11 10 43 43 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 44 44 H 1.07999 * 125.89914 * 179.74206 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5232 -0.0013 6 6 5.0262 2.9941 0.8921 7 6 5.3257 4.2671 0.5442 8 6 6.2846 5.1807 1.2632 9 7 7.6319 5.0164 0.7013 10 6 8.5957 5.8931 1.3799 11 6 9.9843 5.6938 0.7691 12 6 10.4127 4.2352 0.9414 13 6 9.9407 6.0401 -0.7205 14 6 10.9729 6.5937 1.4648 15 1 10.6438 7.2425 2.2630 16 6 12.2977 6.5879 1.0830 17 7 12.6986 5.7974 0.1113 18 14 13.5233 7.7028 1.9458 19 1 12.8250 8.4870 2.9959 20 1 14.5883 6.8778 2.5706 21 1 14.1309 8.6294 0.9572 22 6 4.5838 4.5869 -0.5976 23 7 3.8720 3.5403 -0.9290 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 3.8566 0.6440 -0.8909 30 1 3.8574 0.6437 0.8892 31 1 5.4313 2.4521 1.7339 32 1 6.3000 4.9292 2.3236 33 1 5.9630 6.2147 1.1395 34 1 7.9270 4.0525 0.7455 35 1 8.6270 5.6462 2.4411 36 1 8.2904 6.9322 1.2574 37 1 9.6976 3.5846 0.4379 38 1 11.4018 4.0931 0.5059 39 1 10.4437 3.9885 2.0026 40 1 9.6356 7.0793 -0.8432 41 1 10.9300 5.8985 -1.1555 42 1 9.2255 5.3895 -1.2240 43 1 13.6306 5.7936 -0.1575 44 1 4.5985 5.5333 -1.1178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000459734593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:00 Heat of formation + Delta-G solvation = 30.715551 kcal Electronic energy + Delta-G solvation = -21640.262301 eV Core-core repulsion = 18401.645679 eV Total energy + Delta-G solvation = -3238.616621 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.19699 -38.36860 -36.88268 -34.51418 -33.45108 -31.25336 -30.07329 -29.11493 -26.76407 -25.51451 -25.22585 -24.98362 -23.64978 -22.72252 -20.76515 -20.06550 -18.39038 -17.45149 -16.64628 -16.24381 -15.81567 -15.66311 -15.07786 -14.71127 -14.49765 -14.23342 -13.91296 -13.66392 -13.36863 -12.87686 -12.58710 -12.34932 -12.22529 -12.05558 -11.91443 -11.73870 -11.35561 -11.12032 -10.94412 -10.68575 -10.55472 -10.44216 -10.15953 -10.11629 -10.02168 -9.41540 -9.33076 -9.06155 -8.58440 -8.37809 -8.25052 -7.57439 -5.87489 -3.97679 1.86206 2.25913 2.88140 3.32503 3.40871 3.43355 3.44351 4.32560 4.47451 4.53149 4.79364 4.84752 4.88966 4.90921 4.97509 5.19220 5.22314 5.28465 5.33043 5.37849 5.39278 5.61843 5.91299 6.02580 6.24844 6.41278 6.48565 6.57390 6.71496 6.77660 6.94256 6.98036 7.13632 7.22093 7.45407 7.53897 7.71471 7.80352 7.81425 7.89930 8.06822 8.26575 8.40261 8.60628 9.04309 9.67127 11.12962 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.048335 B = 0.002558 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.148841 B =10941.903368 C =11045.737559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.392 6.392 3 C 0.052 3.948 4 C 0.141 3.859 5 N -0.378 5.378 6 C 0.056 3.944 7 C -0.217 4.217 8 C 0.133 3.867 9 N -0.682 5.682 10 C 0.075 3.925 11 C 0.068 3.932 12 C -0.132 4.132 13 C -0.119 4.119 14 C -0.504 4.504 15 H 0.052 0.948 16 C 0.063 3.937 17 N -0.885 5.885 18 Si 0.888 3.112 19 H -0.275 1.275 20 H -0.286 1.286 21 H -0.285 1.285 22 C 0.071 3.929 23 N -0.304 5.304 24 H 0.089 0.911 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.171 0.829 32 H 0.025 0.975 33 H 0.074 0.926 34 H 0.336 0.664 35 H 0.012 0.988 36 H 0.056 0.944 37 H 0.010 0.990 38 H 0.082 0.918 39 H 0.018 0.982 40 H 0.018 0.982 41 H 0.073 0.927 42 H 0.020 0.980 43 H 0.257 0.743 44 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.813 -9.293 1.303 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.310 6.310 3 C -0.026 4.026 4 C 0.019 3.981 5 N -0.162 5.162 6 C -0.089 4.089 7 C -0.229 4.229 8 C 0.003 3.997 9 N -0.314 5.314 10 C -0.054 4.054 11 C 0.067 3.933 12 C -0.190 4.190 13 C -0.176 4.176 14 C -0.543 4.543 15 H 0.070 0.930 16 C -0.137 4.137 17 N -0.524 5.524 18 Si 0.716 3.284 19 H -0.200 1.200 20 H -0.212 1.212 21 H -0.212 1.212 22 C -0.116 4.116 23 N -0.125 5.125 24 H 0.108 0.892 25 H 0.061 0.939 26 H 0.063 0.937 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.188 0.812 32 H 0.043 0.957 33 H 0.092 0.908 34 H 0.155 0.845 35 H 0.030 0.970 36 H 0.075 0.925 37 H 0.029 0.971 38 H 0.101 0.899 39 H 0.037 0.963 40 H 0.037 0.963 41 H 0.091 0.909 42 H 0.039 0.961 43 H 0.067 0.933 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -21.558 -9.703 -0.127 23.642 hybrid contribution 1.232 0.699 1.946 2.407 sum -20.327 -9.005 1.820 22.306 Atomic orbital electron populations 1.22767 0.80136 1.03009 1.00317 1.87783 1.20440 1.27192 1.95594 1.22686 0.92950 0.85065 1.01873 1.21298 0.92187 0.79556 1.05073 1.48278 1.34551 1.11591 1.21757 1.22342 0.94662 0.95608 0.96305 1.20147 1.05957 0.95540 1.01259 1.20154 0.88294 0.97375 0.93867 1.60650 1.00709 1.11713 1.58352 1.22158 0.93632 0.95470 0.94105 1.18099 0.88680 0.93141 0.93358 1.21827 1.02364 0.96983 0.97780 1.21630 1.01065 0.97244 0.97698 1.21159 0.92835 1.22309 1.17980 0.92953 1.24900 0.98216 0.95549 0.95062 1.69852 1.15843 1.38219 1.28455 0.86610 0.81431 0.80756 0.79581 1.19962 1.21239 1.21151 1.23817 0.94396 0.97715 0.95634 1.77301 1.25066 0.96634 1.13493 0.89248 0.93899 0.93744 0.92780 0.91611 0.88967 0.87917 0.81215 0.95660 0.90771 0.84514 0.97006 0.92532 0.97063 0.89900 0.96291 0.96322 0.90861 0.96053 0.93301 0.79959 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.21 11.01 101.05 1.11 1.32 16 2 O -0.39 -3.51 10.70 -35.23 -0.38 -3.89 16 3 C 0.05 0.46 6.12 37.16 0.23 0.68 16 4 C 0.14 1.27 6.88 -4.04 -0.03 1.24 16 5 N -0.38 -4.50 3.68 -61.36 -0.23 -4.73 16 6 C 0.06 0.67 11.36 -17.22 -0.20 0.47 16 7 C -0.22 -2.94 5.61 -105.05 -0.59 -3.53 16 8 C 0.13 1.94 6.17 -4.97 -0.03 1.91 16 9 N -0.68 -12.17 5.70 -115.06 -0.66 -12.83 16 10 C 0.07 1.55 4.59 -3.82 -0.02 1.53 16 11 C 0.07 1.64 0.57 -155.66 -0.09 1.56 16 12 C -0.13 -3.13 7.92 37.16 0.29 -2.83 16 13 C -0.12 -2.93 8.09 37.16 0.30 -2.63 16 14 C -0.50 -13.59 8.01 -34.44 -0.28 -13.87 16 15 H 0.05 1.41 7.74 -52.48 -0.41 1.00 16 16 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 17 N -0.88 -24.68 9.35 55.43 0.52 -24.16 16 18 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 19 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 22 C 0.07 0.97 11.96 -17.36 -0.21 0.76 16 23 N -0.30 -4.24 12.42 30.63 0.38 -3.86 16 24 H 0.09 0.41 8.14 -51.93 -0.42 -0.02 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.20 16 26 H 0.04 0.25 8.14 -51.93 -0.42 -0.18 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 30 H 0.10 0.71 8.07 -51.93 -0.42 0.29 16 31 H 0.17 1.54 8.06 -52.49 -0.42 1.12 16 32 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.34 6.03 6.76 -39.29 -0.27 5.76 16 35 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 36 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 37 H 0.01 0.23 6.57 -51.93 -0.34 -0.11 16 38 H 0.08 2.19 6.07 -51.93 -0.32 1.87 16 39 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 41 H 0.07 1.98 6.07 -51.93 -0.32 1.67 16 42 H 0.02 0.48 7.60 -51.93 -0.39 0.09 16 43 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 44 H 0.18 2.15 8.06 -52.49 -0.42 1.73 16 LS Contribution 357.17 15.07 5.38 5.38 Total: -1.00 -30.06 357.17 -7.10 -37.16 By element: Atomic # 1 Polarization: 10.00 SS G_CDS: -7.51 Total: 2.49 kcal Atomic # 6 Polarization: -12.15 SS G_CDS: 0.41 Total: -11.74 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.02 Total: -45.57 kcal Atomic # 8 Polarization: -3.51 SS G_CDS: -0.38 Total: -3.89 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -30.06 -7.10 -37.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459734593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.872 kcal (2) G-P(sol) polarization free energy of solvation -30.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.716 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds