Wall clock time and date at job start Tue Mar 31 2020 05:33:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.42901 * 113.99572 * 2 1 4 4 C 1.53002 * 109.46992 * 180.02562 * 3 2 1 5 5 N 1.46502 * 109.46982 * 179.97438 * 4 3 2 6 6 C 1.34946 * 126.03394 * 124.99860 * 5 4 3 7 7 C 1.35321 * 107.74801 * 180.02562 * 6 5 4 8 8 C 1.50701 * 126.04339 * 180.02562 * 7 6 5 9 9 N 1.46903 * 109.47054 * 89.99997 * 8 7 6 10 10 C 1.46898 * 110.99673 * 180.02562 * 9 8 7 11 11 C 1.53006 * 109.47006 * 179.97438 * 10 9 8 12 12 C 1.52997 * 109.47164 * 299.99955 * 11 10 9 13 13 C 1.52999 * 109.46623 * 59.99856 * 11 10 9 14 14 C 1.50698 * 109.47184 * 179.97438 * 11 10 9 15 15 H 1.08005 * 119.99819 * 0.02562 * 14 11 10 16 16 C 1.37875 * 120.00046 * 179.97438 * 14 11 10 17 17 N 1.31518 * 119.99944 * 0.02562 * 16 14 11 18 18 Si 1.86798 * 119.99979 * 180.02562 * 16 14 11 19 19 H 1.48501 * 109.47046 * 0.02562 * 18 16 14 20 20 H 1.48508 * 109.46873 * 120.00118 * 18 16 14 21 21 H 1.48497 * 109.47510 * 240.00153 * 18 16 14 22 22 C 1.39875 * 107.91651 * 0.26101 * 7 6 5 23 23 N 1.30838 * 108.20211 * 359.55955 * 22 7 6 24 24 H 1.08999 * 109.46877 * 180.02562 * 1 2 3 25 25 H 1.08998 * 109.47075 * 299.99562 * 1 2 3 26 26 H 1.08994 * 109.47337 * 59.99783 * 1 2 3 27 27 H 1.09004 * 109.47096 * 60.00178 * 3 2 1 28 28 H 1.09006 * 109.47573 * 299.99981 * 3 2 1 29 29 H 1.08998 * 109.46808 * 59.99983 * 4 3 2 30 30 H 1.09004 * 109.46941 * 299.99755 * 4 3 2 31 31 H 1.07999 * 126.13000 * 0.04160 * 6 5 4 32 32 H 1.08993 * 109.46849 * 329.99960 * 8 7 6 33 33 H 1.08995 * 109.46627 * 209.99296 * 8 7 6 34 34 H 1.00906 * 110.99345 * 303.95214 * 9 8 7 35 35 H 1.09001 * 109.47062 * 59.99745 * 10 9 8 36 36 H 1.08993 * 109.47084 * 299.99192 * 10 9 8 37 37 H 1.09000 * 109.47140 * 60.00051 * 12 11 10 38 38 H 1.09001 * 109.47230 * 179.97438 * 12 11 10 39 39 H 1.09001 * 109.47375 * 300.00034 * 12 11 10 40 40 H 1.09001 * 109.47362 * 60.00551 * 13 11 10 41 41 H 1.09002 * 109.46716 * 179.97438 * 13 11 10 42 42 H 1.09000 * 109.47486 * 299.99829 * 13 11 10 43 43 H 0.96997 * 119.99752 * 179.97438 * 17 16 14 44 44 H 1.07999 * 125.89914 * 179.74206 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5354 1.1848 -0.0006 5 7 4.1312 2.5232 -0.0013 6 6 5.0262 2.9941 0.8921 7 6 5.3257 4.2671 0.5442 8 6 6.2846 5.1807 1.2632 9 7 7.6319 5.0164 0.7013 10 6 8.5957 5.8931 1.3799 11 6 9.9843 5.6938 0.7691 12 6 10.4127 4.2352 0.9414 13 6 9.9407 6.0401 -0.7205 14 6 10.9729 6.5937 1.4648 15 1 10.6438 7.2425 2.2630 16 6 12.2977 6.5879 1.0830 17 7 12.6986 5.7974 0.1113 18 14 13.5233 7.7028 1.9458 19 1 12.8250 8.4870 2.9959 20 1 14.5883 6.8778 2.5706 21 1 14.1309 8.6294 0.9572 22 6 4.5838 4.5869 -0.5976 23 7 3.8720 3.5403 -0.9290 24 1 -0.3633 -1.0277 0.0005 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6885 1.8464 0.8900 28 1 1.6885 1.8465 -0.8900 29 1 3.8566 0.6440 -0.8909 30 1 3.8574 0.6437 0.8892 31 1 5.4313 2.4521 1.7339 32 1 6.3000 4.9292 2.3236 33 1 5.9630 6.2147 1.1395 34 1 7.9270 4.0525 0.7455 35 1 8.6270 5.6462 2.4411 36 1 8.2904 6.9322 1.2574 37 1 9.6976 3.5846 0.4379 38 1 11.4018 4.0931 0.5059 39 1 10.4437 3.9885 2.0026 40 1 9.6356 7.0793 -0.8432 41 1 10.9300 5.8985 -1.1555 42 1 9.2255 5.3895 -1.2240 43 1 13.6306 5.7936 -0.1575 44 1 4.5985 5.5333 -1.1178 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000459734593.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:33:59 Heat of formation + Delta-G solvation = 11.862446 kcal Electronic energy + Delta-G solvation = -21641.079833 eV Core-core repulsion = 18401.645679 eV Total energy + Delta-G solvation = -3239.434153 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.14262 -39.01322 -38.56067 -35.87017 -34.57853 -32.99860 -31.12853 -30.14753 -27.45929 -27.42506 -27.19935 -26.30811 -24.56298 -24.06913 -21.66030 -21.06489 -20.25492 -18.30042 -17.80992 -17.32540 -17.04910 -16.62761 -16.39317 -16.09834 -15.62576 -15.33087 -15.17370 -14.90875 -14.35664 -14.14182 -14.06304 -13.85964 -13.59771 -13.11984 -12.99179 -12.91352 -12.68881 -12.53628 -12.46057 -12.32597 -12.27520 -12.07975 -12.02805 -11.53702 -11.24281 -10.89798 -10.77919 -10.54424 -10.36206 -10.31284 -9.41908 -8.96792 -7.93106 -6.09717 0.93670 1.43041 1.45180 1.46484 1.55799 1.85837 2.49389 2.79165 3.28834 3.59915 3.77699 3.88063 3.99316 4.07263 4.21695 4.31528 4.43508 4.45391 4.54560 4.59631 4.64858 4.67536 4.75550 4.81423 4.91076 4.93261 4.98852 5.10151 5.22283 5.28075 5.35123 5.48812 5.59227 5.70886 5.74282 5.81702 5.98826 6.13319 6.24206 6.34747 6.41722 6.55462 6.73965 6.76538 7.01141 7.57738 9.05051 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.048335 B = 0.002558 C = 0.002534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 579.148841 B =10941.903368 C =11045.737559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.407 6.407 3 C 0.060 3.940 4 C 0.136 3.864 5 N -0.376 5.376 6 C 0.068 3.932 7 C -0.238 4.238 8 C 0.140 3.860 9 N -0.686 5.686 10 C 0.090 3.910 11 C 0.058 3.942 12 C -0.120 4.120 13 C -0.105 4.105 14 C -0.521 4.521 15 H 0.046 0.954 16 C 0.018 3.982 17 N -0.905 5.905 18 Si 0.945 3.055 19 H -0.271 1.271 20 H -0.284 1.284 21 H -0.285 1.285 22 C 0.060 3.940 23 N -0.330 5.330 24 H 0.105 0.895 25 H 0.051 0.949 26 H 0.047 0.953 27 H 0.056 0.944 28 H 0.052 0.948 29 H 0.091 0.909 30 H 0.129 0.871 31 H 0.201 0.799 32 H 0.037 0.963 33 H 0.074 0.926 34 H 0.336 0.664 35 H 0.012 0.988 36 H 0.049 0.951 37 H 0.032 0.968 38 H 0.053 0.947 39 H 0.019 0.981 40 H 0.010 0.990 41 H 0.046 0.954 42 H 0.032 0.968 43 H 0.256 0.744 44 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.834 -10.064 2.342 24.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.325 6.325 3 C -0.018 4.018 4 C 0.015 3.985 5 N -0.159 5.159 6 C -0.079 4.079 7 C -0.250 4.250 8 C 0.011 3.989 9 N -0.318 5.318 10 C -0.039 4.039 11 C 0.057 3.943 12 C -0.178 4.178 13 C -0.163 4.163 14 C -0.560 4.560 15 H 0.065 0.935 16 C -0.180 4.180 17 N -0.544 5.544 18 Si 0.772 3.228 19 H -0.195 1.195 20 H -0.210 1.210 21 H -0.211 1.211 22 C -0.126 4.126 23 N -0.151 5.151 24 H 0.123 0.877 25 H 0.069 0.931 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.070 0.930 29 H 0.110 0.890 30 H 0.147 0.853 31 H 0.218 0.782 32 H 0.056 0.944 33 H 0.092 0.908 34 H 0.155 0.845 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.051 0.949 38 H 0.072 0.928 39 H 0.038 0.962 40 H 0.029 0.971 41 H 0.065 0.935 42 H 0.051 0.949 43 H 0.065 0.935 44 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges -22.609 -10.482 0.907 24.937 hybrid contribution 1.467 0.870 1.605 2.342 sum -21.142 -9.612 2.512 23.360 Atomic orbital electron populations 1.22969 0.78758 1.04282 1.00889 1.87757 1.21999 1.27105 1.95660 1.22539 0.92846 0.85067 1.01310 1.21537 0.92299 0.78338 1.06342 1.48499 1.34284 1.12007 1.21121 1.22794 0.93549 0.95155 0.96412 1.20081 1.06704 0.96347 1.01852 1.20090 0.86503 0.97851 0.94478 1.60577 1.01565 1.11173 1.58494 1.21811 0.92422 0.95785 0.93911 1.18165 0.90355 0.92924 0.92859 1.21650 1.01223 0.97171 0.97738 1.21462 0.99602 0.96961 0.98240 1.21481 0.93753 1.22717 1.18039 0.93534 1.25567 0.99851 0.96830 0.95767 1.69988 1.15981 1.39151 1.29309 0.85716 0.79366 0.79130 0.78614 1.19502 1.20986 1.21138 1.24053 0.94452 0.98148 0.95917 1.77265 1.25849 0.97311 1.14668 0.87699 0.93065 0.93452 0.92549 0.92971 0.89026 0.85327 0.78230 0.94441 0.90791 0.84473 0.97020 0.93198 0.94929 0.92816 0.96208 0.97054 0.93546 0.94949 0.93455 0.79208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 113.37 1.25 1.53 16 2 O -0.41 -6.64 10.70 -148.98 -1.59 -8.24 16 3 C 0.06 0.97 6.12 71.98 0.44 1.41 16 4 C 0.14 2.17 6.88 86.38 0.59 2.76 16 5 N -0.38 -8.22 3.68 -348.05 -1.28 -9.50 16 6 C 0.07 1.42 11.36 83.54 0.95 2.37 16 7 C -0.24 -5.99 5.61 -20.14 -0.11 -6.10 16 8 C 0.14 3.81 6.17 85.56 0.53 4.34 16 9 N -0.69 -23.30 5.70 -517.94 -2.95 -26.25 16 10 C 0.09 3.62 4.59 86.31 0.40 4.02 16 11 C 0.06 2.77 0.57 -52.93 -0.03 2.74 16 12 C -0.12 -5.61 7.92 71.98 0.57 -5.04 16 13 C -0.10 -5.17 8.09 71.98 0.58 -4.59 16 14 C -0.52 -28.03 8.01 25.60 0.21 -27.82 16 15 H 0.05 2.50 7.74 -2.91 -0.02 2.47 16 16 C 0.02 1.01 5.15 84.65 0.44 1.44 16 17 N -0.90 -50.88 9.35 21.45 0.20 -50.68 16 18 Si 0.94 43.45 29.54 68.60 2.03 45.48 16 19 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 20 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 21 H -0.29 -13.03 7.11 99.48 0.71 -12.32 16 22 C 0.06 1.58 11.96 85.24 1.02 2.60 16 23 N -0.33 -8.85 12.42 -57.02 -0.71 -9.55 16 24 H 0.10 0.76 8.14 -2.39 -0.02 0.74 16 25 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 26 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 27 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 28 H 0.05 0.97 8.14 -2.38 -0.02 0.95 16 29 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 30 H 0.13 1.38 8.07 -2.38 -0.02 1.36 16 31 H 0.20 2.86 8.06 -2.91 -0.02 2.83 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.34 11.33 6.76 -89.69 -0.61 10.73 16 35 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 36 H 0.05 2.06 8.14 -2.39 -0.02 2.04 16 37 H 0.03 1.34 6.57 -2.39 -0.02 1.32 16 38 H 0.05 2.83 6.07 -2.39 -0.01 2.82 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 41 H 0.05 2.53 6.07 -2.39 -0.01 2.51 16 42 H 0.03 1.47 7.60 -2.39 -0.02 1.45 16 43 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 44 H 0.19 4.38 8.06 -2.91 -0.02 4.36 16 Total: -1.00 -63.28 357.17 2.88 -60.40 By element: Atomic # 1 Polarization: 18.33 SS G_CDS: 0.36 Total: 18.69 kcal Atomic # 6 Polarization: -27.17 SS G_CDS: 6.83 Total: -20.34 kcal Atomic # 7 Polarization: -91.24 SS G_CDS: -4.74 Total: -95.98 kcal Atomic # 8 Polarization: -6.64 SS G_CDS: -1.59 Total: -8.24 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.48 kcal Total: -63.28 2.88 -60.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000459734593.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.265 kcal (2) G-P(sol) polarization free energy of solvation -63.277 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.875 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.402 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds