Wall clock time and date at job start Tue Mar 31 2020 05:36:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42900 * 114.00082 * 2 1 4 4 C 1.53000 * 109.47039 * 179.97438 * 3 2 1 5 5 N 1.46506 * 109.47241 * 179.97438 * 4 3 2 6 6 C 1.34948 * 126.03634 * 124.99434 * 5 4 3 7 7 C 1.35318 * 107.74348 * 180.02562 * 6 5 4 8 8 C 1.50698 * 126.03553 * 179.97438 * 7 6 5 9 9 N 1.46907 * 109.47216 * 89.99884 * 8 7 6 10 10 C 1.46898 * 111.00104 * 169.99845 * 9 8 7 11 11 C 1.50704 * 109.46845 * 284.08518 * 10 9 8 12 12 H 1.08001 * 120.00215 * 4.87061 * 11 10 9 13 13 C 1.37881 * 119.99877 * 184.86509 * 11 10 9 14 14 N 1.31513 * 120.00317 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99785 * 0.02562 * 13 11 10 16 16 H 1.48507 * 109.47270 * 90.00142 * 15 13 11 17 17 H 1.48496 * 109.47240 * 209.99433 * 15 13 11 18 18 H 1.48491 * 109.47465 * 330.00047 * 15 13 11 19 19 C 1.46900 * 111.00022 * 293.95165 * 9 8 7 20 20 C 1.52995 * 109.46919 * 169.58517 * 19 9 8 21 21 C 1.52994 * 109.47039 * 289.58514 * 19 9 8 22 22 C 1.39866 * 107.92217 * 0.02562 * 7 6 5 23 23 N 1.30837 * 108.20490 * 0.02562 * 22 7 6 24 24 H 1.09004 * 109.47269 * 179.97438 * 1 2 3 25 25 H 1.08998 * 109.47543 * 300.00432 * 1 2 3 26 26 H 1.09003 * 109.46826 * 60.00388 * 1 2 3 27 27 H 1.08998 * 109.47456 * 59.99666 * 3 2 1 28 28 H 1.09001 * 109.47233 * 299.99316 * 3 2 1 29 29 H 1.08997 * 109.47271 * 60.00184 * 4 3 2 30 30 H 1.08994 * 109.47347 * 299.99918 * 4 3 2 31 31 H 1.07996 * 126.12600 * 0.27737 * 6 5 4 32 32 H 1.09001 * 109.47009 * 209.99783 * 8 7 6 33 33 H 1.09003 * 109.47595 * 329.99923 * 8 7 6 34 34 H 1.08999 * 109.47315 * 44.07958 * 10 9 8 35 35 H 1.08991 * 109.47587 * 164.08723 * 10 9 8 36 36 H 0.96995 * 119.99910 * 179.97438 * 14 13 11 37 37 H 1.09003 * 109.46765 * 49.58078 * 19 9 8 38 38 H 1.08997 * 109.47488 * 61.18474 * 20 19 9 39 39 H 1.09002 * 109.46699 * 181.18980 * 20 19 9 40 40 H 1.09003 * 109.47084 * 301.18012 * 20 19 9 41 41 H 1.09006 * 109.47465 * 59.99584 * 21 19 9 42 42 H 1.08997 * 109.47048 * 180.02562 * 21 19 9 43 43 H 1.09004 * 109.47273 * 299.99884 * 21 19 9 44 44 H 1.07998 * 125.89968 * 179.97438 * 22 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 0.0006 5 7 4.1314 2.5230 0.0000 6 6 5.0257 2.9942 0.8940 7 6 5.3255 4.2669 0.5457 8 6 6.2831 5.1810 1.2659 9 7 7.6315 5.0165 0.7064 10 6 8.5418 6.0519 1.2137 11 6 8.2562 7.3572 0.5167 12 1 7.4263 7.4322 -0.1704 13 6 9.0544 8.4556 0.7561 14 7 8.8056 9.5946 0.1475 15 14 10.4902 8.3256 1.9440 16 1 11.7093 7.9119 1.2037 17 1 10.7240 9.6449 2.5842 18 1 10.1790 7.3168 2.9882 19 6 8.1561 3.6727 0.9835 20 6 9.4353 3.4479 0.1749 21 6 8.4669 3.5442 2.4760 22 6 4.5888 4.5846 -0.6000 23 7 3.8719 3.5402 -0.9275 24 1 -0.3634 -1.0277 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 1.6886 1.8464 0.8899 28 1 1.6887 1.8463 -0.8900 29 1 3.8574 0.6436 -0.8891 30 1 3.8567 0.6439 0.8908 31 1 5.4326 2.4513 1.7343 32 1 5.9616 6.2150 1.1411 33 1 6.2968 4.9302 2.3266 34 1 8.3927 6.1728 2.2867 35 1 9.5728 5.7553 1.0213 36 1 9.3669 10.3674 0.3163 37 1 7.4124 2.9272 0.7018 38 1 10.1861 4.1802 0.4716 39 1 9.8130 2.4431 0.3642 40 1 9.2181 3.5601 -0.8874 41 1 7.5556 3.7045 3.0521 42 1 8.8566 2.5473 2.6814 43 1 9.2106 4.2898 2.7577 44 1 4.6077 5.5290 -1.1234 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000535786011.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:58 Heat of formation + Delta-G solvation = 42.168351 kcal Electronic energy + Delta-G solvation = -22352.831635 eV Core-core repulsion = 19114.711644 eV Total energy + Delta-G solvation = -3238.119991 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.04878 -38.31067 -37.73341 -33.90946 -32.67156 -31.57084 -30.21934 -29.40740 -27.30156 -26.71146 -26.41343 -24.24621 -23.35257 -22.01962 -20.55497 -20.06386 -18.52155 -17.22920 -16.89629 -16.54387 -15.95670 -15.59321 -15.16993 -14.53693 -14.50633 -14.11031 -13.91174 -13.73492 -13.38216 -13.19133 -12.70551 -12.51313 -12.39348 -12.32318 -11.93144 -11.72223 -11.63586 -11.58012 -11.27761 -10.92427 -10.88055 -10.60546 -10.42875 -10.21080 -10.05095 -9.94483 -9.79981 -9.23166 -9.18439 -8.50405 -8.13487 -7.20457 -5.99399 -3.94931 2.04058 2.42297 3.11740 3.30928 3.38799 3.39966 3.53664 4.43922 4.46428 4.63117 4.90975 4.94526 4.96580 4.98619 5.01078 5.15165 5.28282 5.33269 5.39487 5.40471 5.47452 5.58527 5.66853 5.79616 5.87662 6.00505 6.11537 6.17588 6.26601 6.31485 6.47527 6.60463 6.66291 6.69115 6.77326 6.94698 6.95198 7.03199 7.19153 7.71847 7.92743 8.03204 8.16337 8.74843 9.11800 9.63433 11.14079 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029243 B = 0.003529 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 957.273660 B = 7933.197507 C = 8495.491840 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 O -0.393 6.393 3 C 0.051 3.949 4 C 0.143 3.857 5 N -0.382 5.382 6 C 0.048 3.952 7 C -0.203 4.203 8 C 0.133 3.867 9 N -0.514 5.514 10 C 0.161 3.839 11 C -0.502 4.502 12 H 0.081 0.919 13 C 0.067 3.933 14 N -0.902 5.902 15 Si 0.871 3.129 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.269 1.269 19 C 0.072 3.928 20 C -0.140 4.140 21 C -0.186 4.186 22 C 0.075 3.925 23 N -0.307 5.307 24 H 0.088 0.912 25 H 0.042 0.958 26 H 0.044 0.956 27 H 0.054 0.946 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.100 0.900 31 H 0.166 0.834 32 H 0.093 0.907 33 H 0.028 0.972 34 H -0.012 1.012 35 H 0.027 0.973 36 H 0.262 0.738 37 H 0.071 0.929 38 H 0.057 0.943 39 H 0.044 0.956 40 H 0.060 0.940 41 H 0.051 0.949 42 H 0.048 0.952 43 H 0.059 0.941 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.186 -18.335 3.173 21.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 O -0.311 6.311 3 C -0.026 4.026 4 C 0.021 3.979 5 N -0.166 5.166 6 C -0.097 4.097 7 C -0.214 4.214 8 C 0.004 3.996 9 N -0.237 5.237 10 C 0.035 3.965 11 C -0.541 4.541 12 H 0.099 0.901 13 C -0.134 4.134 14 N -0.542 5.542 15 Si 0.699 3.301 16 H -0.203 1.203 17 H -0.213 1.213 18 H -0.193 1.193 19 C -0.037 4.037 20 C -0.198 4.198 21 C -0.245 4.245 22 C -0.112 4.112 23 N -0.128 5.128 24 H 0.107 0.893 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.072 0.928 28 H 0.084 0.916 29 H 0.108 0.892 30 H 0.118 0.882 31 H 0.183 0.817 32 H 0.111 0.889 33 H 0.046 0.954 34 H 0.006 0.994 35 H 0.045 0.955 36 H 0.072 0.928 37 H 0.089 0.911 38 H 0.076 0.924 39 H 0.063 0.937 40 H 0.079 0.921 41 H 0.070 0.930 42 H 0.067 0.933 43 H 0.078 0.922 44 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -11.951 -18.886 1.826 22.424 hybrid contribution 1.343 0.513 2.118 2.560 sum -10.608 -18.373 3.944 21.579 Atomic orbital electron populations 1.22760 0.80220 1.02901 1.00340 1.87771 1.20376 1.27342 1.95605 1.22702 0.93036 0.84936 1.01939 1.21234 0.92117 0.79825 1.04721 1.48257 1.34792 1.11481 1.22077 1.22270 0.95204 0.95738 0.96459 1.20226 1.05254 0.95239 1.00713 1.20323 0.87338 0.98484 0.93457 1.62172 1.01554 1.01116 1.58900 1.20201 0.92051 0.90888 0.93359 1.21081 1.15235 0.92034 1.25703 0.90117 1.24891 0.97326 0.95377 0.95801 1.69891 1.39656 1.01420 1.43189 0.86930 0.83702 0.77460 0.82057 1.20277 1.21344 1.19340 1.21677 0.96605 0.93098 0.92314 1.21810 0.97228 0.99859 1.00885 1.22505 1.01642 1.01286 0.99038 1.23891 0.93983 0.97687 0.95639 1.77296 1.25049 0.96770 1.13635 0.89340 0.93905 0.93760 0.92767 0.91564 0.89223 0.88201 0.81658 0.88906 0.95412 0.99391 0.95490 0.92805 0.91073 0.92383 0.93652 0.92087 0.93034 0.93265 0.92220 0.79756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.35 16 2 O -0.39 -3.81 10.70 -35.23 -0.38 -4.18 16 3 C 0.05 0.50 6.12 37.16 0.23 0.73 16 4 C 0.14 1.43 6.88 -4.04 -0.03 1.40 16 5 N -0.38 -5.07 3.68 -61.37 -0.23 -5.30 16 6 C 0.05 0.65 9.75 -17.22 -0.17 0.48 16 7 C -0.20 -3.25 5.02 -105.06 -0.53 -3.77 16 8 C 0.13 2.41 5.16 -4.97 -0.03 2.39 16 9 N -0.51 -10.34 4.36 -229.52 -1.00 -11.34 16 10 C 0.16 3.78 2.39 -4.97 -0.01 3.76 16 11 C -0.50 -13.98 9.17 -34.44 -0.32 -14.29 16 12 H 0.08 2.45 7.91 -52.49 -0.42 2.03 16 13 C 0.07 1.92 5.47 -17.82 -0.10 1.82 16 14 N -0.90 -27.50 13.96 55.43 0.77 -26.72 16 15 Si 0.87 21.37 27.37 -169.99 -4.65 16.72 16 16 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 17 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 18 H -0.27 -6.32 6.68 56.52 0.38 -5.94 16 19 C 0.07 1.21 2.78 -67.72 -0.19 1.02 16 20 C -0.14 -2.30 9.15 37.16 0.34 -1.96 16 21 C -0.19 -2.82 8.53 37.15 0.32 -2.50 16 22 C 0.07 1.21 11.96 -17.37 -0.21 1.01 16 23 N -0.31 -4.83 12.42 30.62 0.38 -4.45 16 24 H 0.09 0.46 8.14 -51.93 -0.42 0.03 16 25 H 0.04 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 30 H 0.10 0.78 8.07 -51.93 -0.42 0.36 16 31 H 0.17 1.78 8.03 -52.49 -0.42 1.36 16 32 H 0.09 1.89 7.34 -51.93 -0.38 1.50 16 33 H 0.03 0.48 6.42 -51.93 -0.33 0.14 16 34 H -0.01 -0.27 6.72 -51.93 -0.35 -0.62 16 35 H 0.03 0.64 5.05 -51.93 -0.26 0.38 16 36 H 0.26 7.51 8.31 -40.82 -0.34 7.18 16 37 H 0.07 1.11 5.76 -51.93 -0.30 0.81 16 38 H 0.06 1.03 6.31 -51.93 -0.33 0.70 16 39 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.74 6.59 -51.93 -0.34 0.40 16 42 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.06 1.01 6.75 -51.93 -0.35 0.66 16 44 H 0.19 2.86 8.06 -52.49 -0.42 2.43 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -31.80 351.37 -6.67 -38.47 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -7.29 Total: 0.07 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: 0.43 Total: -8.56 kcal Atomic # 7 Polarization: -47.73 SS G_CDS: -0.07 Total: -47.81 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.38 Total: -4.18 kcal Atomic # 14 Polarization: 21.37 SS G_CDS: -4.65 Total: 16.72 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.80 -6.67 -38.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000535786011.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.640 kcal (2) G-P(sol) polarization free energy of solvation -31.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.668 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds