Wall clock time and date at job start Tue Mar 31 2020 05:22:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31508 * 1 3 3 Si 1.86803 * 120.00089 * 2 1 4 4 H 1.48500 * 109.46915 * 269.99974 * 3 2 1 5 5 H 1.48504 * 109.46972 * 30.00411 * 3 2 1 6 6 H 1.48504 * 109.46820 * 150.00339 * 3 2 1 7 7 C 1.37874 * 119.99818 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00401 * 359.97438 * 7 2 1 9 9 C 1.50707 * 120.00180 * 179.97438 * 7 2 1 10 10 C 1.53002 * 109.47104 * 179.97438 * 9 7 2 11 11 N 1.46506 * 109.46546 * 180.02562 * 10 9 7 12 12 C 1.34773 * 119.99682 * 180.02562 * 11 10 9 13 13 O 1.21593 * 119.99913 * 359.97438 * 12 11 10 14 14 N 1.34778 * 120.00284 * 180.02562 * 12 11 10 15 15 C 1.47016 * 125.64520 * 359.94702 * 14 12 11 16 16 C 1.54327 * 107.27182 * 181.09916 * 15 14 12 17 17 C 1.55155 * 102.93946 * 22.19583 * 16 15 14 18 18 H 1.08997 * 111.00332 * 82.57092 * 17 16 15 19 19 N 1.46900 * 111.03438 * 206.40971 * 17 16 15 20 20 C 1.48538 * 110.99742 * 171.90162 * 19 17 16 21 21 C 1.54940 * 103.22563 * 159.71950 * 20 19 17 22 22 C 1.54589 * 102.92252 * 322.58575 * 21 20 19 23 23 C 1.47899 * 110.99978 * 289.29561 * 19 17 16 24 24 C 1.47427 * 125.64974 * 179.97438 * 14 12 11 25 25 H 0.97004 * 119.99764 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46916 * 59.99779 * 9 7 2 27 27 H 1.08999 * 109.46689 * 299.99909 * 9 7 2 28 28 H 1.08996 * 109.46926 * 60.00052 * 10 9 7 29 29 H 1.08996 * 109.46774 * 299.99537 * 10 9 7 30 30 H 0.96998 * 120.00025 * 359.97438 * 11 10 9 31 31 H 1.08997 * 109.88632 * 300.52228 * 15 14 12 32 32 H 1.09005 * 109.88072 * 61.68327 * 15 14 12 33 33 H 1.09000 * 110.71918 * 263.83366 * 16 15 14 34 34 H 1.08995 * 110.72026 * 140.56125 * 16 15 14 35 35 H 1.09005 * 110.66653 * 278.15195 * 20 19 17 36 36 H 1.08995 * 110.67067 * 41.28152 * 20 19 17 37 37 H 1.08994 * 110.72067 * 204.22571 * 21 20 19 38 38 H 1.09007 * 110.87626 * 81.01405 * 21 20 19 39 39 H 1.09003 * 110.30727 * 263.04347 * 22 21 20 40 40 H 1.08997 * 110.39318 * 140.91639 * 22 21 20 41 41 H 1.09005 * 109.91716 * 333.50721 * 23 19 17 42 42 H 1.09002 * 109.91968 * 94.60571 * 23 19 17 43 43 H 1.08993 * 110.36586 * 36.99372 * 24 14 12 44 44 H 1.09001 * 110.45298 * 274.71877 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4401 0.7000 7 6 2.0044 -1.1940 -0.0005 8 1 1.4644 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 6 4.0214 -2.6367 -0.0010 11 7 5.4865 -2.6366 -0.0009 12 6 6.1603 -3.8038 -0.0014 13 8 5.5523 -4.8568 -0.0013 14 7 7.5081 -3.8039 -0.0008 15 6 8.3649 -2.6093 -0.0008 16 6 9.8293 -3.0957 -0.0283 17 6 9.7088 -4.5276 -0.6134 18 1 9.6540 -4.5017 -1.7017 19 7 10.8213 -5.3757 -0.1650 20 6 10.6058 -6.7906 -0.5626 21 6 12.0301 -7.3972 -0.5004 22 6 12.9194 -6.2457 -1.0230 23 6 12.0908 -4.9663 -0.8037 24 6 8.3672 -5.0020 -0.0006 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8744 -0.6801 -0.8911 28 1 3.6577 -3.1506 -0.8907 29 1 3.6584 -3.1502 0.8893 30 1 5.9714 -1.7966 -0.0014 31 1 8.1584 -2.0049 -0.8840 32 1 8.1855 -2.0244 0.9013 33 1 10.2451 -3.1243 0.9789 34 1 10.4336 -2.4630 -0.6783 35 1 9.9430 -7.2918 0.1428 36 1 10.2066 -6.8491 -1.5752 37 1 12.1067 -8.2690 -1.1501 38 1 12.2975 -7.6566 0.5240 39 1 13.1308 -6.3824 -2.0835 40 1 13.8489 -6.1962 -0.4558 41 1 11.8870 -4.4872 -1.7614 42 1 12.6296 -4.2785 -0.1519 43 1 7.9253 -5.7857 -0.6157 44 1 8.5205 -5.3606 1.0172 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541520255.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:15 Heat of formation + Delta-G solvation = -25.429625 kcal Electronic energy + Delta-G solvation = -21996.538786 eV Core-core repulsion = 18755.487527 eV Total energy + Delta-G solvation = -3241.051259 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.35064 -39.12823 -37.04412 -34.90410 -32.98729 -32.46341 -30.39436 -30.05019 -29.12785 -27.83307 -24.91968 -23.28328 -22.23832 -21.19970 -20.77278 -20.45804 -19.58809 -17.94268 -17.09658 -16.82819 -16.29593 -15.45687 -15.43183 -14.79594 -14.34723 -14.18292 -14.13044 -13.71811 -13.66985 -13.19619 -13.07718 -12.86517 -12.59100 -12.56632 -12.40085 -11.75137 -11.63164 -11.48199 -11.40120 -11.18704 -11.15755 -11.10384 -10.94679 -10.37035 -10.24015 -9.96025 -9.75163 -9.30620 -8.84935 -8.76319 -8.60277 -8.27860 -6.09265 -4.09111 2.73924 3.26230 3.33736 3.35281 3.47999 3.62297 4.00314 4.24930 4.33587 4.39184 4.42504 4.55483 4.57091 4.77742 4.89824 5.00605 5.11802 5.14369 5.23632 5.26546 5.39774 5.41870 5.44469 5.52285 5.58953 5.61234 5.69176 5.75026 5.79825 5.83798 6.03646 6.27163 6.27655 6.46083 6.60497 6.68930 6.84057 7.11718 7.26754 7.32815 7.69274 8.26241 8.47297 8.90858 8.95964 9.50870 11.03801 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042874 B = 0.002802 C = 0.002657 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 652.916053 B = 9988.706280 C =10534.012960 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.882 3.118 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.148 3.852 11 N -0.739 5.739 12 C 0.719 3.281 13 O -0.591 6.591 14 N -0.642 5.642 15 C 0.100 3.900 16 C -0.118 4.118 17 C 0.059 3.941 18 H 0.060 0.940 19 N -0.506 5.506 20 C 0.031 3.969 21 C -0.123 4.123 22 C -0.132 4.132 23 C 0.037 3.963 24 C 0.138 3.862 25 H 0.264 0.736 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.391 0.609 31 H 0.066 0.934 32 H 0.069 0.931 33 H 0.088 0.912 34 H 0.078 0.922 35 H 0.086 0.914 36 H 0.047 0.953 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.045 0.955 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.936 -8.598 -1.831 30.241 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.025 3.975 11 N -0.393 5.393 12 C 0.420 3.580 13 O -0.470 6.470 14 N -0.382 5.382 15 C -0.024 4.024 16 C -0.156 4.156 17 C -0.051 4.051 18 H 0.078 0.922 19 N -0.231 5.231 20 C -0.097 4.097 21 C -0.162 4.162 22 C -0.170 4.170 23 C -0.091 4.091 24 C 0.014 3.986 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.224 0.776 31 H 0.084 0.916 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.097 0.903 35 H 0.105 0.895 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.094 0.906 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.063 0.937 42 H 0.098 0.902 43 H 0.093 0.907 44 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 28.188 -9.188 -1.263 29.675 hybrid contribution 0.515 1.416 -0.954 1.784 sum 28.703 -7.771 -2.217 29.819 Atomic orbital electron populations 1.69905 1.06275 1.27010 1.50509 1.25000 0.94772 0.99134 0.94425 0.86746 0.80274 0.83554 0.78458 1.20264 1.21285 1.19088 1.20919 0.88613 0.94921 1.51516 0.90562 1.19795 0.97940 0.91405 0.96765 1.21395 0.74646 0.99883 1.01543 1.45523 1.08852 1.06139 1.78759 1.15520 0.79514 0.84891 0.78050 1.90909 1.66676 1.30754 1.58616 1.47470 1.03641 1.07445 1.79669 1.21972 0.89921 0.88671 1.01800 1.22622 0.95328 0.94812 1.02831 1.23009 0.90958 0.93667 0.97452 0.92231 1.64768 1.01492 1.02084 1.54751 1.23286 0.97712 0.88906 0.99771 1.22474 0.94194 0.97475 1.02009 1.22404 0.98932 0.94461 1.01220 1.22851 0.90824 0.97602 0.97813 1.21893 0.87556 0.87827 1.01360 0.92574 0.96033 0.96502 0.92138 0.92077 0.77569 0.91611 0.91281 0.89369 0.90311 0.89530 0.93456 0.91021 0.90606 0.91557 0.90941 0.93697 0.90159 0.90723 0.90876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.55 13.96 55.43 0.77 -26.77 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.79 9.66 -34.44 -0.33 -15.12 16 8 H 0.08 2.34 7.99 -52.49 -0.42 1.93 16 9 C -0.02 -0.50 4.16 -27.88 -0.12 -0.61 16 10 C 0.15 3.16 5.61 -4.04 -0.02 3.14 16 11 N -0.74 -13.19 5.52 -65.22 -0.36 -13.55 16 12 C 0.72 13.15 8.49 -86.92 -0.74 12.41 16 13 O -0.59 -13.20 16.60 5.28 0.09 -13.11 16 14 N -0.64 -8.92 3.33 -176.23 -0.59 -9.51 16 15 C 0.10 1.01 6.15 -3.07 -0.02 0.99 16 16 C -0.12 -0.94 6.20 -24.90 -0.15 -1.09 16 17 C 0.06 0.53 2.42 -65.55 -0.16 0.37 16 18 H 0.06 0.56 7.96 -51.93 -0.41 0.14 16 19 N -0.51 -4.16 5.15 -219.92 -1.13 -5.30 16 20 C 0.03 0.23 5.84 -1.89 -0.01 0.22 16 21 C -0.12 -0.74 7.06 -24.87 -0.18 -0.92 16 22 C -0.13 -0.74 6.93 -25.37 -0.18 -0.92 16 23 C 0.04 0.25 6.29 -2.75 -0.02 0.23 16 24 C 0.14 1.65 5.68 -2.52 -0.01 1.63 16 25 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 26 H 0.02 0.49 7.20 -51.93 -0.37 0.12 16 27 H 0.02 0.38 7.57 -51.93 -0.39 -0.01 16 28 H 0.06 1.36 8.14 -51.93 -0.42 0.94 16 29 H 0.06 1.38 8.14 -51.93 -0.42 0.95 16 30 H 0.39 5.92 7.46 -40.82 -0.30 5.62 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 32 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.09 0.68 8.04 -51.93 -0.42 0.26 16 36 H 0.05 0.37 8.02 -51.93 -0.42 -0.05 16 37 H 0.07 0.37 8.14 -51.93 -0.42 -0.06 16 38 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.07 0.34 8.14 -51.93 -0.42 -0.09 16 40 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 41 H 0.04 0.29 7.66 -51.93 -0.40 -0.10 16 42 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.97 8.04 -51.93 -0.42 0.56 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.47 16 LS Contribution 348.66 15.07 5.25 5.25 Total: -1.00 -33.30 348.66 -10.46 -43.75 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: -7.79 Total: 0.49 kcal Atomic # 6 Polarization: 4.24 SS G_CDS: -2.03 Total: 2.21 kcal Atomic # 7 Polarization: -53.82 SS G_CDS: -1.30 Total: -55.12 kcal Atomic # 8 Polarization: -13.20 SS G_CDS: 0.09 Total: -13.11 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.30 -10.46 -43.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541520255.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.324 kcal (2) G-P(sol) polarization free energy of solvation -33.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds