Wall clock time and date at job start Tue Mar 31 2020 05:22:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86800 * 120.00208 * 2 1 4 4 H 1.48497 * 109.46847 * 270.00073 * 3 2 1 5 5 H 1.48502 * 109.46888 * 29.99758 * 3 2 1 6 6 H 1.48496 * 109.47530 * 149.99641 * 3 2 1 7 7 C 1.37877 * 120.00172 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00490 * 180.02562 * 7 2 1 10 10 C 1.52996 * 109.47491 * 179.97438 * 9 7 2 11 11 N 1.46498 * 109.47059 * 179.97438 * 10 9 7 12 12 C 1.34777 * 119.99828 * 179.72339 * 11 10 9 13 13 O 1.21593 * 119.99949 * 0.28071 * 12 11 10 14 14 N 1.34777 * 120.00128 * 180.27942 * 12 11 10 15 15 C 1.47017 * 125.64654 * 0.02562 * 14 12 11 16 16 C 1.54327 * 107.27144 * 178.90659 * 15 14 12 17 17 C 1.55154 * 102.94319 * 337.80625 * 16 15 14 18 18 H 1.08993 * 111.00927 * 277.39486 * 17 16 15 19 19 N 1.46899 * 111.00360 * 153.57293 * 17 16 15 20 20 C 1.48527 * 110.99812 * 57.61079 * 19 17 16 21 21 C 1.54939 * 103.22752 * 159.72032 * 20 19 17 22 22 C 1.54595 * 102.91884 * 322.58081 * 21 20 19 23 23 C 1.47904 * 110.99578 * 175.00151 * 19 17 16 24 24 C 1.47424 * 125.65050 * 179.71948 * 14 12 11 25 25 H 0.96998 * 120.00373 * 0.02562 * 1 2 3 26 26 H 1.09004 * 109.46801 * 59.99996 * 9 7 2 27 27 H 1.09000 * 109.46987 * 300.00765 * 9 7 2 28 28 H 1.09004 * 109.47066 * 60.00201 * 10 9 7 29 29 H 1.08994 * 109.46974 * 300.00349 * 10 9 7 30 30 H 0.97001 * 120.00384 * 0.02562 * 11 10 9 31 31 H 1.09002 * 109.88384 * 298.32315 * 15 14 12 32 32 H 1.08998 * 109.88448 * 59.48961 * 15 14 12 33 33 H 1.09001 * 110.71870 * 96.17195 * 16 15 14 34 34 H 1.09003 * 110.72097 * 219.44171 * 16 15 14 35 35 H 1.09004 * 110.66582 * 278.14944 * 20 19 17 36 36 H 1.09002 * 110.67033 * 41.27916 * 20 19 17 37 37 H 1.09003 * 110.72444 * 204.22533 * 21 20 19 38 38 H 1.08996 * 110.72764 * 80.93915 * 21 20 19 39 39 H 1.09003 * 110.31275 * 263.04465 * 22 21 20 40 40 H 1.09005 * 110.30809 * 140.87428 * 22 21 20 41 41 H 1.08993 * 109.92042 * 333.51046 * 23 19 17 42 42 H 1.09004 * 109.91319 * 94.61323 * 23 19 17 43 43 H 1.09007 * 110.36746 * 323.00299 * 24 14 12 44 44 H 1.09005 * 110.36577 * 85.31909 * 24 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5115 -1.1941 0.0011 10 6 4.0215 -2.6366 0.0023 11 7 5.4865 -2.6365 0.0022 12 6 6.1603 -3.8037 0.0088 13 8 5.5524 -4.8568 0.0096 14 7 7.5081 -3.8038 0.0144 15 6 8.3649 -2.6091 0.0147 16 6 9.8291 -3.0953 0.0503 17 6 9.7061 -4.5255 0.6391 18 1 9.6470 -4.4965 1.7271 19 7 10.8207 -5.3744 0.1975 20 6 12.1266 -4.7821 0.5846 21 6 13.0935 -5.9917 0.5339 22 6 12.2248 -7.1514 1.0727 23 6 10.7692 -6.6997 0.8522 24 6 8.3673 -5.0017 0.0278 25 1 -0.4850 0.8400 -0.0004 26 1 3.8745 -0.6801 0.8912 27 1 3.8752 -0.6804 -0.8888 28 1 3.6585 -3.1510 -0.8875 29 1 3.6578 -3.1498 0.8924 30 1 5.9715 -1.7965 0.0019 31 1 8.1896 -2.0269 -0.8899 32 1 8.1544 -2.0021 0.8953 33 1 10.2495 -3.1269 -0.9548 34 1 10.4306 -2.4607 0.7013 35 1 12.4294 -4.0174 -0.1308 36 1 12.0785 -4.3699 1.5925 37 1 13.9558 -5.8236 1.1792 38 1 13.4097 -6.1901 -0.4902 39 1 12.4163 -7.3059 2.1346 40 1 12.4259 -8.0657 0.5143 41 1 10.2558 -6.6208 1.8104 42 1 10.2498 -7.4110 0.2101 43 1 7.9226 -5.7806 0.6472 44 1 8.5249 -5.3668 -0.9872 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000541520277.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:18 Heat of formation + Delta-G solvation = -25.321147 kcal Electronic energy + Delta-G solvation = -21986.494768 eV Core-core repulsion = 18745.448213 eV Total energy + Delta-G solvation = -3241.046555 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.35165 -39.13565 -37.04489 -34.89941 -32.98855 -32.46638 -30.40607 -30.04756 -29.08706 -27.88556 -24.91006 -23.23430 -22.36068 -21.07679 -20.79871 -20.47683 -19.59178 -17.95201 -17.10284 -16.82705 -16.25423 -15.45839 -15.44411 -14.83027 -14.35853 -14.18693 -14.09376 -13.72348 -13.70943 -13.29598 -13.02963 -12.72982 -12.57981 -12.54540 -12.45071 -11.73232 -11.67862 -11.49645 -11.41834 -11.20975 -11.18404 -11.09772 -10.91272 -10.36842 -10.23574 -9.96001 -9.74594 -9.30453 -8.85644 -8.74988 -8.60088 -8.27040 -6.09144 -4.08974 2.74363 3.26366 3.33724 3.35188 3.48637 3.62522 3.99758 4.24415 4.34286 4.39254 4.40349 4.55671 4.57412 4.76525 4.88057 5.00828 5.11158 5.14080 5.23718 5.26124 5.39853 5.40526 5.43328 5.49467 5.58353 5.64531 5.66159 5.77063 5.80356 5.82857 6.04219 6.27443 6.28447 6.46320 6.60802 6.68887 6.84559 7.12204 7.26960 7.33361 7.69456 8.26886 8.47496 8.91600 8.96211 9.50970 11.03928 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.042608 B = 0.002795 C = 0.002651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 656.992506 B =10014.660511 C =10559.432853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.069 3.931 3 Si 0.883 3.117 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.266 1.266 7 C -0.521 4.521 8 H 0.076 0.924 9 C -0.021 4.021 10 C 0.148 3.852 11 N -0.739 5.739 12 C 0.718 3.282 13 O -0.591 6.591 14 N -0.642 5.642 15 C 0.101 3.899 16 C -0.121 4.121 17 C 0.059 3.941 18 H 0.060 0.940 19 N -0.507 5.507 20 C 0.036 3.964 21 C -0.124 4.124 22 C -0.132 4.132 23 C 0.033 3.967 24 C 0.140 3.860 25 H 0.264 0.736 26 H 0.021 0.979 27 H 0.017 0.983 28 H 0.061 0.939 29 H 0.060 0.940 30 H 0.391 0.609 31 H 0.069 0.931 32 H 0.066 0.934 33 H 0.087 0.913 34 H 0.079 0.921 35 H 0.084 0.916 36 H 0.045 0.955 37 H 0.071 0.929 38 H 0.075 0.925 39 H 0.066 0.934 40 H 0.072 0.928 41 H 0.046 0.954 42 H 0.082 0.918 43 H 0.074 0.926 44 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.355 -8.048 1.960 30.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.133 4.133 3 Si 0.710 3.290 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.191 1.191 7 C -0.560 4.560 8 H 0.094 0.906 9 C -0.059 4.059 10 C 0.025 3.975 11 N -0.393 5.393 12 C 0.420 3.580 13 O -0.469 6.469 14 N -0.382 5.382 15 C -0.023 4.023 16 C -0.159 4.159 17 C -0.051 4.051 18 H 0.078 0.922 19 N -0.231 5.231 20 C -0.092 4.092 21 C -0.162 4.162 22 C -0.170 4.170 23 C -0.095 4.095 24 C 0.015 3.985 25 H 0.074 0.926 26 H 0.039 0.961 27 H 0.035 0.965 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.224 0.776 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.106 0.894 34 H 0.098 0.902 35 H 0.102 0.898 36 H 0.063 0.937 37 H 0.089 0.911 38 H 0.094 0.906 39 H 0.085 0.915 40 H 0.091 0.909 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.092 0.908 44 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 28.524 -8.753 1.394 29.870 hybrid contribution 0.581 1.513 0.917 1.862 sum 29.105 -7.241 2.311 30.081 Atomic orbital electron populations 1.69901 1.06274 1.27017 1.50510 1.25000 0.94769 0.99133 0.94428 0.86744 0.80247 0.83554 0.78479 1.20235 1.21302 1.19116 1.20919 0.88618 0.94922 1.51511 0.90560 1.19792 0.97936 0.91410 0.96756 1.21391 0.74659 0.99873 1.01544 1.45523 1.08846 1.06138 1.78788 1.15519 0.79516 0.84883 0.78058 1.90910 1.66670 1.30750 1.58589 1.47479 1.03645 1.07450 1.79667 1.21954 0.89850 0.88710 1.01808 1.22667 0.95571 0.94903 1.02728 1.22960 0.91329 0.93260 0.97509 0.92241 1.64728 1.01326 1.02335 1.54723 1.23218 0.89037 0.97445 0.99485 1.22482 0.97437 0.94369 1.01928 1.22406 0.94360 0.99027 1.01179 1.22915 0.97064 0.91590 0.97954 1.21814 0.87486 0.87687 1.01463 0.92571 0.96083 0.96469 0.92100 0.92121 0.77586 0.91271 0.91615 0.89407 0.90237 0.89782 0.93660 0.91062 0.90619 0.91536 0.90876 0.93514 0.89919 0.90764 0.90830 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 3 Si 0.88 21.19 27.47 -169.99 -4.67 16.52 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 6 H -0.27 -6.04 6.54 56.52 0.37 -5.67 16 7 C -0.52 -14.80 9.66 -34.44 -0.33 -15.13 16 8 H 0.08 2.35 7.99 -52.49 -0.42 1.93 16 9 C -0.02 -0.49 4.16 -27.89 -0.12 -0.61 16 10 C 0.15 3.16 5.61 -4.04 -0.02 3.14 16 11 N -0.74 -13.22 5.52 -65.23 -0.36 -13.57 16 12 C 0.72 13.19 8.49 -86.92 -0.74 12.45 16 13 O -0.59 -13.25 16.60 5.28 0.09 -13.16 16 14 N -0.64 -8.95 3.33 -176.37 -0.59 -9.54 16 15 C 0.10 1.01 6.15 -3.07 -0.02 0.99 16 16 C -0.12 -0.94 5.64 -24.90 -0.14 -1.08 16 17 C 0.06 0.53 2.44 -65.68 -0.16 0.37 16 18 H 0.06 0.56 7.90 -51.93 -0.41 0.15 16 19 N -0.51 -4.16 5.15 -220.09 -1.13 -5.29 16 20 C 0.04 0.23 5.78 -1.90 -0.01 0.22 16 21 C -0.12 -0.69 7.06 -24.87 -0.18 -0.86 16 22 C -0.13 -0.78 6.93 -25.37 -0.18 -0.95 16 23 C 0.03 0.25 6.35 -2.75 -0.02 0.23 16 24 C 0.14 1.69 6.20 -2.65 -0.02 1.67 16 25 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 26 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 27 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 28 H 0.06 1.37 8.14 -51.93 -0.42 0.95 16 29 H 0.06 1.37 8.14 -51.93 -0.42 0.94 16 30 H 0.39 5.92 7.46 -40.82 -0.30 5.62 16 31 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.09 0.68 8.14 -51.93 -0.42 0.25 16 34 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.50 8.01 -51.93 -0.42 0.08 16 36 H 0.05 0.29 8.02 -51.93 -0.42 -0.13 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.11 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 40 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 41 H 0.05 0.37 7.62 -51.93 -0.40 -0.03 16 42 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.99 8.04 -51.93 -0.42 0.57 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 348.54 15.07 5.25 5.25 Total: -1.00 -33.39 348.54 -10.45 -43.83 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.79 Total: 0.41 kcal Atomic # 6 Polarization: 4.35 SS G_CDS: -2.02 Total: 2.33 kcal Atomic # 7 Polarization: -53.88 SS G_CDS: -1.31 Total: -55.19 kcal Atomic # 8 Polarization: -13.25 SS G_CDS: 0.09 Total: -13.16 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -4.67 Total: 16.52 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.39 -10.45 -43.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000541520277.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.511 kcal (2) G-P(sol) polarization free energy of solvation -33.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.833 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds