Wall clock time and date at job start Tue Mar 31 2020 05:53:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52998 * 109.47496 * 2 1 4 4 N 1.46500 * 109.46981 * 120.00452 * 2 1 3 5 5 C 1.34947 * 126.03669 * 274.99590 * 4 2 1 6 6 C 1.35314 * 107.74841 * 179.97438 * 5 4 2 7 7 C 1.50699 * 126.04240 * 180.02562 * 6 5 4 8 8 H 1.09002 * 109.46959 * 339.99739 * 7 6 5 9 9 C 1.52997 * 109.47078 * 99.99651 * 7 6 5 10 10 N 1.46899 * 109.47244 * 219.99860 * 7 6 5 11 11 C 1.46894 * 111.00220 * 154.99886 * 10 7 6 12 12 C 1.53001 * 109.47508 * 179.97438 * 11 10 7 13 13 O 1.42901 * 109.46735 * 64.99736 * 12 11 10 14 14 C 1.42899 * 113.99686 * 180.02562 * 13 12 11 15 15 C 1.50701 * 109.46959 * 180.02562 * 14 13 12 16 16 H 1.07996 * 120.00045 * 0.02562 * 15 14 13 17 17 C 1.37879 * 119.99918 * 180.02562 * 15 14 13 18 18 N 1.31517 * 120.00066 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 119.99937 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47207 * 359.97438 * 19 17 15 21 21 H 1.48496 * 109.47277 * 120.00045 * 19 17 15 22 22 H 1.48504 * 109.47025 * 239.99956 * 19 17 15 23 23 C 1.39873 * 107.91835 * 0.26186 * 6 5 4 24 24 N 1.30835 * 108.20244 * 359.55923 * 23 6 5 25 25 H 1.09007 * 109.47046 * 300.00014 * 1 2 3 26 26 H 1.09002 * 109.47006 * 59.99589 * 1 2 3 27 27 H 1.09001 * 109.47297 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.47234 * 240.00393 * 2 1 3 29 29 H 1.08995 * 109.47443 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47251 * 300.00872 * 3 2 1 31 31 H 1.09007 * 109.46985 * 59.99948 * 3 2 1 32 32 H 1.08005 * 126.12899 * 359.96069 * 5 4 2 33 33 H 1.09002 * 109.47153 * 60.00207 * 9 7 6 34 34 H 1.08998 * 109.47533 * 179.97438 * 9 7 6 35 35 H 1.08996 * 109.47853 * 300.00179 * 9 7 6 36 36 H 1.00904 * 110.99838 * 31.04414 * 10 7 6 37 37 H 1.08998 * 109.47346 * 299.99916 * 11 10 7 38 38 H 1.09007 * 109.47035 * 60.00148 * 11 10 7 39 39 H 1.08994 * 109.47487 * 185.00012 * 12 11 10 40 40 H 1.09001 * 109.47294 * 305.00249 * 12 11 10 41 41 H 1.08999 * 109.47609 * 299.99912 * 14 13 12 42 42 H 1.08999 * 109.47346 * 60.00240 * 14 13 12 43 43 H 0.96999 * 119.99794 * 180.02562 * 18 17 15 44 44 H 1.08000 * 125.89813 * 179.73483 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0182 -0.6907 1.1961 5 6 2.1933 -0.1394 2.4154 6 6 2.6558 -1.1055 3.2423 7 6 2.9910 -0.9375 4.7019 8 1 3.1501 0.1187 4.9189 9 6 1.8353 -1.4650 5.5545 10 7 4.2130 -1.6909 5.0135 11 6 4.8985 -1.1223 6.1817 12 6 6.1631 -1.9320 6.4751 13 8 7.0825 -1.7890 5.3905 14 6 8.3038 -2.5103 5.5650 15 6 9.1934 -2.2885 4.3690 16 1 8.8597 -1.6593 3.5571 17 6 10.4333 -2.8888 4.3113 18 7 10.8394 -3.6554 5.2997 19 14 11.5363 -2.6132 2.8291 20 1 10.8519 -1.7176 1.8623 21 1 12.8092 -1.9874 3.2688 22 1 11.8245 -3.9162 2.1775 23 6 2.7730 -2.2862 2.5016 24 7 2.3854 -2.0402 1.2764 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 3.1300 1.4424 0.0005 30 1 1.6766 1.9563 -0.8898 31 1 1.6767 1.9563 0.8900 32 1 1.9992 0.8887 2.6832 33 1 1.6762 -2.5212 5.3375 34 1 2.0779 -1.3440 6.6103 35 1 0.9286 -0.9060 5.3234 36 1 4.8289 -1.7272 4.2151 37 1 5.1694 -0.0868 5.9757 38 1 4.2352 -1.1594 7.0459 39 1 6.6239 -1.5664 7.3927 40 1 5.9019 -2.9836 6.5937 41 1 8.8092 -2.1571 6.4638 42 1 8.0866 -3.5738 5.6645 43 1 11.7118 -4.0774 5.2592 44 1 3.1205 -3.2374 2.8770 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549934065.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:30 Heat of formation + Delta-G solvation = 17.410719 kcal Electronic energy + Delta-G solvation = -21783.823781 eV Core-core repulsion = 18544.630219 eV Total energy + Delta-G solvation = -3239.193562 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31822 -37.44937 -36.34297 -35.41043 -32.76391 -31.54704 -30.27577 -28.73280 -27.80469 -27.68250 -26.45371 -23.47368 -22.33291 -22.22019 -21.23243 -19.97620 -19.79559 -17.09450 -16.35554 -15.76471 -15.51035 -15.23488 -15.00289 -14.84251 -14.59582 -14.22903 -14.08351 -13.60207 -13.21999 -13.01885 -12.97265 -12.59545 -12.46059 -12.27463 -12.11635 -11.90038 -11.75849 -11.57934 -11.48030 -11.19628 -11.12908 -10.75050 -10.71563 -10.53494 -10.30052 -9.96681 -9.37665 -9.05025 -8.78489 -8.36850 -8.12597 -8.10898 -6.07707 -4.08977 1.89625 2.41552 2.87788 3.31248 3.37603 3.44114 4.16352 4.38148 4.43763 4.50698 4.67420 4.73998 4.89548 5.00572 5.05173 5.15904 5.25173 5.27761 5.28885 5.38531 5.45218 5.53914 5.59731 5.65070 5.71476 5.77835 5.81659 5.84307 6.04218 6.08455 6.16202 6.29226 6.39226 6.45327 6.73322 7.00283 7.16224 7.37962 7.48837 7.76845 7.80144 7.83155 8.19642 8.62947 9.04971 9.55819 11.03917 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015434 B = 0.003543 C = 0.003033 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1813.728648 B = 7899.992220 C = 9230.782344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.155 3.845 3 C -0.165 4.165 4 N -0.370 5.370 5 C 0.057 3.943 6 C -0.236 4.236 7 C 0.162 3.838 8 H 0.042 0.958 9 C -0.131 4.131 10 N -0.680 5.680 11 C 0.067 3.933 12 C 0.062 3.938 13 O -0.399 6.399 14 C 0.197 3.803 15 C -0.512 4.512 16 H 0.066 0.934 17 C 0.056 3.944 18 N -0.898 5.898 19 Si 0.906 3.094 20 H -0.271 1.271 21 H -0.283 1.283 22 H -0.282 1.282 23 C 0.072 3.928 24 N -0.301 5.301 25 H 0.061 0.939 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.101 0.899 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.065 0.935 32 H 0.167 0.833 33 H 0.061 0.939 34 H 0.052 0.948 35 H 0.048 0.952 36 H 0.358 0.642 37 H 0.032 0.968 38 H 0.074 0.926 39 H 0.039 0.961 40 H 0.046 0.954 41 H 0.003 0.997 42 H 0.006 0.994 43 H 0.263 0.737 44 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.227 9.506 -5.628 24.821 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.054 3.946 3 C -0.223 4.223 4 N -0.153 5.153 5 C -0.089 4.089 6 C -0.248 4.248 7 C 0.051 3.949 8 H 0.060 0.940 9 C -0.189 4.189 10 N -0.314 5.314 11 C -0.063 4.063 12 C -0.016 4.016 13 O -0.319 6.319 14 C 0.123 3.877 15 C -0.551 4.551 16 H 0.084 0.916 17 C -0.145 4.145 18 N -0.538 5.538 19 Si 0.734 3.266 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.208 1.208 23 C -0.115 4.115 24 N -0.121 5.121 25 H 0.080 0.920 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.119 0.881 29 H 0.087 0.913 30 H 0.099 0.901 31 H 0.084 0.916 32 H 0.184 0.816 33 H 0.080 0.920 34 H 0.071 0.929 35 H 0.067 0.933 36 H 0.178 0.822 37 H 0.051 0.949 38 H 0.093 0.907 39 H 0.057 0.943 40 H 0.065 0.935 41 H 0.021 0.979 42 H 0.024 0.976 43 H 0.073 0.927 44 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges -22.667 8.617 -6.684 25.154 hybrid contribution 1.292 1.052 0.062 1.667 sum -21.375 9.669 -6.622 24.377 Atomic orbital electron populations 1.22234 0.93831 1.03235 1.02871 1.21206 0.94593 0.92743 0.86100 1.22201 1.02633 0.94046 1.03460 1.48743 1.50919 1.07564 1.08079 1.22129 1.01853 0.99329 0.85629 1.20119 1.13721 0.93749 0.97169 1.19676 0.91306 0.95255 0.88636 0.93994 1.21755 0.96442 1.01784 0.98958 1.60561 1.07817 1.53513 1.09465 1.21984 0.93942 0.96351 0.93998 1.22294 0.89610 0.98841 0.90829 1.87794 1.29533 1.73017 1.41533 1.20165 0.79803 0.90668 0.97076 1.21098 1.00026 1.29692 1.04258 0.91624 1.24946 0.97711 0.95028 0.96856 1.69975 1.20345 1.31794 1.31673 0.86305 0.80059 0.78047 0.82218 1.19555 1.20888 1.20819 1.23804 0.97970 0.99626 0.90078 1.77380 1.21079 0.92989 1.20669 0.91983 0.90637 0.91636 0.88072 0.91268 0.90081 0.91600 0.81628 0.92002 0.92893 0.93263 0.82189 0.94945 0.90743 0.94312 0.93542 0.97891 0.97605 0.92748 0.79696 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.08 9.52 37.16 0.35 -0.72 16 2 C 0.16 1.29 3.93 -67.93 -0.27 1.02 16 3 C -0.17 -1.04 8.84 37.16 0.33 -0.71 16 4 N -0.37 -4.35 3.53 -54.87 -0.19 -4.55 16 5 C 0.06 0.64 10.50 -17.22 -0.18 0.46 16 6 C -0.24 -3.02 4.81 -105.05 -0.51 -3.53 16 7 C 0.16 2.02 3.05 -68.87 -0.21 1.81 16 8 H 0.04 0.51 7.79 -51.93 -0.40 0.10 16 9 C -0.13 -1.44 9.40 37.16 0.35 -1.09 16 10 N -0.68 -10.26 6.10 -107.96 -0.66 -10.92 16 11 C 0.07 1.02 5.90 -3.83 -0.02 0.99 16 12 C 0.06 1.17 6.28 37.16 0.23 1.41 16 13 O -0.40 -9.67 9.85 -35.23 -0.35 -10.01 16 14 C 0.20 5.50 5.69 36.01 0.20 5.70 16 15 C -0.51 -15.32 9.43 -34.44 -0.32 -15.65 16 16 H 0.07 1.96 7.81 -52.49 -0.41 1.55 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.28 13.29 55.43 0.74 -26.55 16 19 Si 0.91 22.20 29.54 -169.99 -5.02 17.18 16 20 H -0.27 -6.54 7.11 56.52 0.40 -6.14 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.79 7.11 56.52 0.40 -6.38 16 23 C 0.07 1.01 11.45 -17.36 -0.20 0.81 16 24 N -0.30 -4.40 12.58 30.63 0.39 -4.01 16 25 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 26 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 28 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.08 0.35 8.14 -51.93 -0.42 -0.08 16 31 H 0.06 0.37 7.16 -51.93 -0.37 -0.01 16 32 H 0.17 1.37 7.26 -52.48 -0.38 0.98 16 33 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.05 0.56 7.45 -51.93 -0.39 0.17 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.36 6.24 7.71 -39.29 -0.30 5.94 16 37 H 0.03 0.50 8.06 -51.93 -0.42 0.09 16 38 H 0.07 0.96 7.44 -51.93 -0.39 0.57 16 39 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.00 0.09 8.14 -51.93 -0.42 -0.33 16 42 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 43 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 44 H 0.19 2.49 8.06 -52.49 -0.42 2.07 16 LS Contribution 365.19 15.07 5.50 5.50 Total: -1.00 -33.03 365.19 -7.63 -40.65 By element: Atomic # 1 Polarization: 8.34 SS G_CDS: -7.69 Total: 0.65 kcal Atomic # 6 Polarization: -7.62 SS G_CDS: -0.34 Total: -7.95 kcal Atomic # 7 Polarization: -46.29 SS G_CDS: 0.27 Total: -46.02 kcal Atomic # 8 Polarization: -9.67 SS G_CDS: -0.35 Total: -10.01 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.50 Total: 5.50 kcal Total: -33.03 -7.63 -40.65 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549934065.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.065 kcal (2) G-P(sol) polarization free energy of solvation -33.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds