Wall clock time and date at job start Tue Mar 31 2020 05:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47127 * 2 1 4 4 N 1.46500 * 109.47473 * 239.99627 * 2 1 3 5 5 C 1.34948 * 126.03586 * 84.71410 * 4 2 1 6 6 C 1.35314 * 107.74400 * 179.84196 * 5 4 2 7 7 C 1.50703 * 126.03552 * 180.16114 * 6 5 4 8 8 H 1.09000 * 109.47430 * 20.28987 * 7 6 5 9 9 C 1.53001 * 109.47193 * 260.28434 * 7 6 5 10 10 N 1.46904 * 109.46967 * 140.28806 * 7 6 5 11 11 C 1.46901 * 111.00077 * 204.99750 * 10 7 6 12 12 C 1.52997 * 109.46981 * 179.97438 * 11 10 7 13 13 O 1.42897 * 109.46970 * 65.00768 * 12 11 10 14 14 C 1.42904 * 114.00051 * 180.02562 * 13 12 11 15 15 C 1.50702 * 109.47078 * 179.97438 * 14 13 12 16 16 H 1.08003 * 120.00128 * 359.97438 * 15 14 13 17 17 C 1.37873 * 120.00205 * 179.97438 * 15 14 13 18 18 N 1.31521 * 119.99585 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00305 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.46949 * 60.00004 * 19 17 15 21 21 H 1.48503 * 109.46897 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47053 * 299.99875 * 19 17 15 23 23 C 1.39862 * 107.92414 * 0.42379 * 6 5 4 24 24 N 1.30838 * 108.20151 * 359.73815 * 23 6 5 25 25 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.46832 * 60.00321 * 1 2 3 27 27 H 1.09004 * 109.47261 * 300.00303 * 1 2 3 28 28 H 1.08998 * 109.47533 * 119.99499 * 2 1 3 29 29 H 1.08993 * 109.46955 * 60.00011 * 3 2 1 30 30 H 1.09000 * 109.47050 * 179.97438 * 3 2 1 31 31 H 1.09001 * 109.47002 * 299.99574 * 3 2 1 32 32 H 1.08004 * 126.12543 * 0.02562 * 5 4 2 33 33 H 1.09003 * 109.46750 * 300.00209 * 9 7 6 34 34 H 1.08992 * 109.46864 * 60.00104 * 9 7 6 35 35 H 1.08995 * 109.47142 * 180.02562 * 9 7 6 36 36 H 1.00906 * 110.99665 * 328.95191 * 10 7 6 37 37 H 1.08991 * 109.46836 * 300.00042 * 11 10 7 38 38 H 1.09002 * 109.46604 * 60.00016 * 11 10 7 39 39 H 1.09007 * 109.46737 * 184.99886 * 12 11 10 40 40 H 1.08998 * 109.47483 * 305.00148 * 12 11 10 41 41 H 1.09004 * 109.46490 * 299.98929 * 14 13 12 42 42 H 1.08995 * 109.47237 * 59.99486 * 14 13 12 43 43 H 0.97003 * 119.99940 * 180.02562 * 18 17 15 44 44 H 1.07995 * 125.90512 * 179.71746 * 23 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 7 2.0184 -0.6907 -1.1961 5 6 2.1883 -0.1407 -2.4167 6 6 2.6568 -1.1052 -3.2420 7 6 2.9931 -0.9369 -4.7013 8 1 3.1521 0.1194 -4.9181 9 6 1.8382 -1.4646 -5.5550 10 7 4.2156 -1.6899 -5.0122 11 6 4.9018 -1.1210 -6.1798 12 6 6.1675 -1.9296 -6.4715 13 8 5.8062 -3.2577 -6.8555 14 6 6.9214 -4.1010 -7.1512 15 6 6.4265 -5.4699 -7.5416 16 1 5.3664 -5.6755 -7.5615 17 6 7.3270 -6.4598 -7.8733 18 7 8.6179 -6.2092 -7.8495 19 14 6.7137 -8.1567 -8.3566 20 1 5.8445 -8.0460 -9.5555 21 1 7.8726 -9.0329 -8.6639 22 1 5.9365 -8.7404 -7.2339 23 6 2.7682 -2.2874 -2.5029 24 7 2.3857 -2.0401 -1.2764 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5137 0.8900 29 1 1.6767 1.9563 0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.9890 0.8861 -2.6857 33 1 1.6793 -2.5209 -5.3382 34 1 0.9312 -0.9059 -5.3244 35 1 2.0816 -1.3433 -6.6105 36 1 4.8309 -1.7262 -4.2132 37 1 4.2392 -1.1581 -7.0443 38 1 5.1722 -0.0854 -5.9733 39 1 6.7228 -1.4557 -7.2810 40 1 6.7894 -1.9664 -5.5771 41 1 7.4927 -3.6723 -7.9746 42 1 7.5585 -4.1828 -6.2706 43 1 9.2515 -6.9056 -8.0833 44 1 3.1104 -3.2399 -2.8796 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000549934066.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:53:32 Heat of formation + Delta-G solvation = 21.340064 kcal Electronic energy + Delta-G solvation = -21640.224104 eV Core-core repulsion = 18401.200931 eV Total energy + Delta-G solvation = -3239.023173 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.38295 -37.42700 -36.33824 -35.44850 -32.71065 -31.58023 -30.33402 -28.75318 -27.80901 -27.72562 -26.35741 -23.51549 -22.31150 -22.18272 -21.32746 -20.03897 -19.84584 -17.14152 -16.29349 -15.77490 -15.55871 -15.30361 -14.99060 -14.89856 -14.36115 -14.22720 -14.16346 -13.56584 -13.20283 -13.06201 -12.97200 -12.62525 -12.53838 -12.43402 -12.02204 -11.90481 -11.80346 -11.56983 -11.44353 -11.29466 -11.04628 -10.76266 -10.67404 -10.37092 -10.35532 -9.90488 -9.44114 -9.00496 -8.70772 -8.42882 -8.08307 -8.02237 -6.02009 -4.02609 1.82396 2.34864 2.81841 3.39213 3.41094 3.45809 4.09105 4.37299 4.42781 4.44067 4.59829 4.66803 4.84748 4.97886 5.01139 5.10725 5.18040 5.24121 5.31389 5.34408 5.40685 5.50627 5.55251 5.66440 5.74187 5.74900 5.81655 5.85750 6.04831 6.08504 6.17317 6.20748 6.43102 6.52589 6.69274 6.93627 7.20604 7.36795 7.53848 7.70623 7.73062 7.90081 8.26855 8.72468 9.12328 9.61937 11.09706 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025286 B = 0.002845 C = 0.002734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1107.084347 B = 9839.005256 C =10240.175047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.156 3.844 3 C -0.164 4.164 4 N -0.371 5.371 5 C 0.055 3.945 6 C -0.235 4.235 7 C 0.165 3.835 8 H 0.040 0.960 9 C -0.132 4.132 10 N -0.668 5.668 11 C 0.066 3.934 12 C 0.066 3.934 13 O -0.379 6.379 14 C 0.194 3.806 15 C -0.509 4.509 16 H 0.066 0.934 17 C 0.054 3.946 18 N -0.902 5.902 19 Si 0.907 3.093 20 H -0.275 1.275 21 H -0.287 1.287 22 H -0.275 1.275 23 C 0.072 3.928 24 N -0.302 5.302 25 H 0.065 0.935 26 H 0.061 0.939 27 H 0.075 0.925 28 H 0.101 0.899 29 H 0.080 0.920 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.166 0.834 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.055 0.945 36 H 0.341 0.659 37 H 0.078 0.922 38 H 0.031 0.969 39 H 0.038 0.962 40 H 0.033 0.967 41 H 0.001 0.999 42 H 0.003 0.997 43 H 0.263 0.737 44 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.686 18.359 14.345 27.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.054 3.946 3 C -0.222 4.222 4 N -0.154 5.154 5 C -0.091 4.091 6 C -0.247 4.247 7 C 0.054 3.946 8 H 0.057 0.943 9 C -0.190 4.190 10 N -0.300 5.300 11 C -0.063 4.063 12 C -0.013 4.013 13 O -0.298 6.298 14 C 0.119 3.881 15 C -0.547 4.547 16 H 0.085 0.915 17 C -0.146 4.146 18 N -0.541 5.541 19 Si 0.735 3.265 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.200 1.200 23 C -0.115 4.115 24 N -0.122 5.122 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.094 0.906 28 H 0.119 0.881 29 H 0.099 0.901 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.184 0.816 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.159 0.841 37 H 0.096 0.904 38 H 0.049 0.951 39 H 0.056 0.944 40 H 0.051 0.949 41 H 0.019 0.981 42 H 0.021 0.979 43 H 0.073 0.927 44 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -15.256 17.313 15.240 27.654 hybrid contribution 0.677 0.385 -0.695 1.044 sum -14.578 17.697 14.545 27.153 Atomic orbital electron populations 1.22240 0.93777 1.03348 1.02903 1.21202 0.94688 0.92654 0.86079 1.22195 1.02396 0.94135 1.03516 1.48764 1.50985 1.07666 1.08001 1.22127 1.01918 0.99411 0.85674 1.20163 1.13664 0.93704 0.97191 1.19690 0.91548 0.94816 0.88560 0.94260 1.21750 0.96005 1.02037 0.99237 1.60405 1.07395 1.54327 1.07884 1.22016 0.95794 0.94089 0.94415 1.22223 0.94632 0.86789 0.97627 1.87957 1.34383 1.19483 1.87992 1.20167 0.84604 0.89044 0.94239 1.21038 0.94038 0.94515 1.45147 0.91535 1.24950 0.94707 0.99280 0.95688 1.69963 1.00951 1.34077 1.49123 0.86406 0.78039 0.82954 0.79131 1.20067 1.21288 1.19994 1.23894 0.97882 0.99701 0.89980 1.77402 1.21177 0.92808 1.20793 0.91565 0.91941 0.90624 0.88104 0.90076 0.91452 0.91579 0.81648 0.91693 0.93439 0.92583 0.84066 0.90376 0.95089 0.94367 0.94883 0.98092 0.97946 0.92742 0.79432 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.52 37.16 0.35 -0.64 16 2 C 0.16 1.13 3.93 -67.93 -0.27 0.87 16 3 C -0.16 -0.81 8.84 37.16 0.33 -0.48 16 4 N -0.37 -3.99 3.52 -54.86 -0.19 -4.18 16 5 C 0.06 0.56 10.50 -17.22 -0.18 0.38 16 6 C -0.24 -2.85 4.81 -105.06 -0.51 -3.35 16 7 C 0.16 2.03 3.05 -68.86 -0.21 1.82 16 8 H 0.04 0.44 7.79 -51.93 -0.40 0.04 16 9 C -0.13 -1.65 9.40 37.16 0.35 -1.30 16 10 N -0.67 -9.96 6.05 -107.95 -0.65 -10.61 16 11 C 0.07 1.00 5.87 -3.82 -0.02 0.97 16 12 C 0.07 1.24 6.22 37.16 0.23 1.47 16 13 O -0.38 -9.38 10.27 -35.23 -0.36 -9.75 16 14 C 0.19 5.47 5.69 36.01 0.20 5.68 16 15 C -0.51 -15.41 9.43 -34.44 -0.32 -15.73 16 16 H 0.07 2.01 7.81 -52.48 -0.41 1.60 16 17 C 0.05 1.61 5.46 -17.82 -0.10 1.51 16 18 N -0.90 -27.60 13.29 55.43 0.74 -26.86 16 19 Si 0.91 22.42 29.54 -169.99 -5.02 17.40 16 20 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 21 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 22 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 23 C 0.07 0.98 11.46 -17.37 -0.20 0.78 16 24 N -0.30 -4.16 12.58 30.62 0.39 -3.78 16 25 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.10 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.08 0.25 8.14 -51.93 -0.42 -0.17 16 30 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.07 0.29 7.16 -51.93 -0.37 -0.08 16 32 H 0.17 1.18 7.27 -52.48 -0.38 0.80 16 33 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 34 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.72 7.45 -51.93 -0.39 0.33 16 36 H 0.34 5.02 8.15 -39.29 -0.32 4.70 16 37 H 0.08 1.21 7.43 -51.93 -0.39 0.83 16 38 H 0.03 0.39 8.06 -51.93 -0.42 -0.03 16 39 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 40 H 0.03 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.00 0.04 8.14 -51.93 -0.42 -0.39 16 42 H 0.00 0.08 8.14 -51.93 -0.42 -0.34 16 43 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 44 H 0.19 2.57 8.06 -52.49 -0.42 2.15 16 LS Contribution 365.94 15.07 5.51 5.51 Total: -1.00 -33.83 365.94 -7.64 -41.47 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.71 Total: -1.17 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -0.34 Total: -8.04 kcal Atomic # 7 Polarization: -45.71 SS G_CDS: 0.27 Total: -45.44 kcal Atomic # 8 Polarization: -9.38 SS G_CDS: -0.36 Total: -9.75 kcal Atomic # 14 Polarization: 22.42 SS G_CDS: -5.02 Total: 17.40 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.83 -7.64 -41.47 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000549934066.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.813 kcal (2) G-P(sol) polarization free energy of solvation -33.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.473 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds