Wall clock time and date at job start Tue Mar 31 2020 05:20:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86797 * 120.00241 * 2 1 4 4 H 1.48503 * 109.47324 * 240.00151 * 3 2 1 5 5 H 1.48501 * 109.47259 * 0.02562 * 3 2 1 6 6 H 1.48505 * 109.46929 * 120.00551 * 3 2 1 7 7 C 1.37881 * 120.00008 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00202 * 172.91338 * 7 2 1 9 9 C 1.50703 * 119.99589 * 352.91198 * 7 2 1 10 10 C 1.53003 * 115.55009 * 84.54066 * 9 7 2 11 11 N 1.46500 * 109.47415 * 39.67059 * 10 9 7 12 12 C 1.34772 * 119.99869 * 181.05420 * 11 10 9 13 13 O 1.21583 * 120.00306 * 359.97438 * 12 11 10 14 14 N 1.34785 * 119.99567 * 180.02562 * 12 11 10 15 15 C 1.46500 * 119.99541 * 180.02562 * 14 12 11 16 16 C 1.53003 * 109.46673 * 179.97438 * 15 14 12 17 17 C 1.53008 * 109.46950 * 179.97438 * 16 15 14 18 18 H 1.09000 * 110.33330 * 54.29765 * 17 16 15 19 19 C 1.54904 * 110.36894 * 176.55024 * 17 16 15 20 20 C 1.55271 * 101.59152 * 155.81710 * 19 17 16 21 21 C 1.54313 * 103.08776 * 324.48417 * 20 19 17 22 22 N 1.47443 * 107.23160 * 22.20999 * 21 20 19 23 23 C 1.52997 * 117.51733 * 230.23394 * 9 7 2 24 24 C 1.53001 * 117.49942 * 298.86471 * 9 7 2 25 25 H 0.97003 * 119.99759 * 5.02774 * 1 2 3 26 26 H 1.09009 * 109.46338 * 279.67786 * 10 9 7 27 27 H 1.08996 * 109.47541 * 159.68051 * 10 9 7 28 28 H 0.97005 * 119.99548 * 1.06302 * 11 10 9 29 29 H 0.97001 * 120.00054 * 359.97438 * 14 12 11 30 30 H 1.08998 * 109.46957 * 299.98496 * 15 14 12 31 31 H 1.08992 * 109.47464 * 59.99220 * 15 14 12 32 32 H 1.08997 * 109.47095 * 299.99039 * 16 15 14 33 33 H 1.08992 * 109.47422 * 59.99673 * 16 15 14 34 34 H 1.09002 * 110.99216 * 273.98754 * 19 17 16 35 35 H 1.08993 * 110.99577 * 37.81401 * 19 17 16 36 36 H 1.09001 * 110.73886 * 206.05104 * 20 19 17 37 37 H 1.08998 * 110.75627 * 82.93160 * 20 19 17 38 38 H 1.08998 * 109.89085 * 262.80204 * 21 20 19 39 39 H 1.09001 * 110.02346 * 141.68220 * 21 20 19 40 40 H 1.00901 * 111.00293 * 238.72008 * 22 21 20 41 41 H 1.09006 * 117.50089 * 214.96808 * 23 9 7 42 42 H 1.08997 * 117.50041 * 359.97438 * 23 9 7 43 43 H 1.08996 * 117.49755 * 359.97438 * 24 9 7 44 44 H 1.09000 * 117.49316 * 145.00201 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6962 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0783 -1.1976 -0.1159 9 6 1.2596 -2.4942 0.1599 10 6 0.6732 -3.0818 -1.1253 11 7 1.6220 -2.8936 -2.2256 12 6 1.3078 -3.3165 -3.4661 13 8 0.2371 -3.8545 -3.6720 14 7 2.1809 -3.1438 -4.4782 15 6 1.8391 -3.6029 -5.8268 16 6 2.9932 -3.2877 -6.7806 17 6 2.6366 -3.7678 -8.1889 18 1 1.6828 -3.3440 -8.5033 19 6 3.7544 -3.3817 -9.1894 20 6 3.5499 -4.4383 -10.3087 21 6 3.1216 -5.6976 -9.5264 22 7 2.5824 -5.2447 -8.2310 23 6 1.7703 -3.4758 1.2165 24 6 0.4721 -2.7021 1.4552 25 1 -0.4850 0.8369 -0.0736 26 1 -0.2628 -2.5756 -1.3621 27 1 0.4853 -4.1463 -0.9856 28 1 2.4764 -2.4648 -2.0612 29 1 3.0353 -2.7148 -4.3139 30 1 1.6641 -4.6786 -5.8109 31 1 0.9377 -3.0931 -6.1667 32 1 3.1679 -2.2120 -6.7965 33 1 3.8948 -3.7973 -6.4409 34 1 3.6048 -2.3718 -9.5713 35 1 4.7390 -3.4831 -8.7331 36 1 4.4814 -4.6166 -10.8459 37 1 2.7639 -4.1256 -10.9961 38 1 3.9838 -6.3441 -9.3636 39 1 2.3528 -6.2371 -10.0796 40 1 3.0991 -5.6474 -7.4635 41 1 1.6885 -4.5402 0.9961 42 1 2.6457 -3.1816 1.7955 43 1 0.4933 -1.8986 2.1914 44 1 -0.4636 -3.2574 1.3916 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000563592746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:20:46 Heat of formation + Delta-G solvation = -18.589585 kcal Electronic energy + Delta-G solvation = -21869.297290 eV Core-core repulsion = 18628.542638 eV Total energy + Delta-G solvation = -3240.754652 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.44687 -38.85735 -36.74367 -34.86742 -33.10502 -32.00760 -31.57031 -30.29788 -27.54187 -25.86995 -25.02205 -22.73863 -21.24500 -21.12302 -20.86160 -20.05214 -19.35991 -17.51593 -16.35307 -16.31557 -16.04655 -15.27689 -15.22097 -14.68545 -14.28280 -14.04923 -13.95602 -13.69139 -13.36136 -12.91205 -12.75556 -12.55051 -12.08967 -11.88862 -11.77142 -11.59466 -11.58584 -11.11785 -11.08417 -11.01892 -10.96897 -10.90874 -10.55389 -10.21296 -9.67110 -9.41133 -8.93193 -8.73360 -8.66234 -8.50171 -8.24522 -7.76049 -6.08933 -4.18358 3.23661 3.31076 3.31615 3.36639 3.90934 3.97259 4.32593 4.36641 4.45799 4.60526 4.90591 4.92975 4.98975 5.12558 5.17702 5.22184 5.26081 5.38835 5.49774 5.54605 5.59906 5.63199 5.75172 5.91778 6.08736 6.10904 6.15934 6.35734 6.53322 6.62730 6.63130 6.75678 6.92901 6.95715 7.12340 7.13937 7.38597 7.44350 7.53178 7.73699 7.79075 8.34934 8.81586 8.87051 9.38252 9.48566 10.98730 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022461 B = 0.003246 C = 0.002970 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.324478 B = 8623.833224 C = 9424.617971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.077 3.923 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.505 4.505 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.184 3.816 11 N -0.713 5.713 12 C 0.696 3.304 13 O -0.608 6.608 14 N -0.757 5.757 15 C 0.145 3.855 16 C -0.135 4.135 17 C 0.082 3.918 18 H 0.091 0.909 19 C -0.150 4.150 20 C -0.142 4.142 21 C 0.046 3.954 22 N -0.680 5.680 23 C -0.211 4.211 24 C -0.152 4.152 25 H 0.262 0.738 26 H 0.064 0.936 27 H 0.033 0.967 28 H 0.399 0.601 29 H 0.392 0.608 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.077 0.923 33 H 0.068 0.932 34 H 0.075 0.925 35 H 0.069 0.931 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.050 0.950 39 H 0.074 0.926 40 H 0.340 0.660 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.111 -6.386 -15.965 19.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.128 4.128 3 Si 0.717 3.283 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.543 4.543 8 H 0.077 0.923 9 C 0.029 3.971 10 C 0.060 3.940 11 N -0.367 5.367 12 C 0.396 3.604 13 O -0.488 6.488 14 N -0.414 5.414 15 C 0.021 3.979 16 C -0.174 4.174 17 C -0.028 4.028 18 H 0.109 0.891 19 C -0.189 4.189 20 C -0.180 4.180 21 C -0.083 4.083 22 N -0.310 5.310 23 C -0.248 4.248 24 C -0.191 4.191 25 H 0.072 0.928 26 H 0.082 0.918 27 H 0.051 0.949 28 H 0.235 0.765 29 H 0.225 0.775 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.096 0.904 33 H 0.086 0.914 34 H 0.094 0.906 35 H 0.087 0.913 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.069 0.931 39 H 0.092 0.908 40 H 0.157 0.843 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.221 -6.815 -16.232 19.028 hybrid contribution 2.162 1.600 0.270 2.703 sum 9.383 -5.215 -15.962 19.236 Atomic orbital electron populations 1.69971 1.05926 1.27018 1.47481 1.24983 0.94749 0.98851 0.94186 0.86715 0.79657 0.83302 0.78596 1.20286 1.21302 1.20207 1.20245 0.92822 0.88672 1.52556 0.92252 1.19032 0.98206 0.93884 0.86023 1.20687 0.91550 0.96511 0.85301 1.45110 1.22320 1.62826 1.06402 1.16057 0.83689 0.79793 0.80883 1.90856 1.23847 1.50411 1.83648 1.45113 1.20877 1.67101 1.08320 1.21012 0.96712 1.00153 0.80052 1.22071 0.98670 1.02400 0.94225 1.22484 0.98584 0.88028 0.93678 0.89103 1.23218 0.99348 0.99669 0.96679 1.22791 1.01566 0.95598 0.98063 1.22627 0.98245 0.96729 0.90721 1.61855 1.58430 1.06513 1.04197 1.23082 0.98323 0.95695 1.07737 1.22499 0.92589 1.01186 1.02783 0.92769 0.91780 0.94886 0.76511 0.77520 0.91358 0.92004 0.90424 0.91350 0.90579 0.91275 0.91196 0.90984 0.93127 0.90777 0.84261 0.91587 0.90480 0.89952 0.91640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.04 12.97 55.43 0.72 -23.33 16 2 C 0.08 2.02 5.39 -17.82 -0.10 1.93 16 3 Si 0.89 20.20 29.55 -169.99 -5.02 15.18 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 5 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 6 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 7 C -0.51 -12.79 7.43 -34.44 -0.26 -13.04 16 8 H 0.06 1.46 7.82 -52.49 -0.41 1.05 16 9 C 0.03 0.69 1.71 -155.66 -0.27 0.43 16 10 C 0.18 4.30 5.75 -4.04 -0.02 4.28 16 11 N -0.71 -14.92 5.34 -65.22 -0.35 -15.27 16 12 C 0.70 14.27 8.57 -86.92 -0.74 13.53 16 13 O -0.61 -14.83 16.34 5.29 0.09 -14.74 16 14 N -0.76 -11.54 5.56 -65.23 -0.36 -11.90 16 15 C 0.15 1.92 5.59 -4.04 -0.02 1.89 16 16 C -0.14 -1.23 4.70 -26.73 -0.13 -1.35 16 17 C 0.08 0.72 3.36 -66.18 -0.22 0.50 16 18 H 0.09 0.88 8.14 -51.93 -0.42 0.46 16 19 C -0.15 -1.08 6.51 -24.52 -0.16 -1.24 16 20 C -0.14 -0.96 6.94 -24.84 -0.17 -1.14 16 21 C 0.05 0.35 7.58 -2.84 -0.02 0.33 16 22 N -0.68 -6.30 6.95 -103.84 -0.72 -7.03 16 23 C -0.21 -4.47 9.88 -26.73 -0.26 -4.73 16 24 C -0.15 -3.52 9.51 -26.73 -0.25 -3.77 16 25 H 0.26 7.03 8.32 -40.82 -0.34 6.69 16 26 H 0.06 1.71 8.14 -51.92 -0.42 1.28 16 27 H 0.03 0.75 7.95 -51.93 -0.41 0.34 16 28 H 0.40 7.81 7.47 -40.82 -0.30 7.50 16 29 H 0.39 4.91 8.49 -40.82 -0.35 4.57 16 30 H 0.07 0.98 7.87 -51.93 -0.41 0.57 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 33 H 0.07 0.56 8.02 -51.93 -0.42 0.14 16 34 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 35 H 0.07 0.48 8.06 -51.93 -0.42 0.06 16 36 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.34 3.00 8.27 -39.29 -0.32 2.67 16 41 H 0.07 1.28 8.08 -51.93 -0.42 0.87 16 42 H 0.08 1.59 8.14 -51.93 -0.42 1.17 16 43 H 0.08 2.00 8.14 -51.93 -0.42 1.58 16 44 H 0.07 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 359.00 15.07 5.41 5.41 Total: -1.00 -30.41 359.00 -10.54 -40.95 By element: Atomic # 1 Polarization: 20.78 SS G_CDS: -7.67 Total: 13.11 kcal Atomic # 6 Polarization: 0.25 SS G_CDS: -2.63 Total: -2.38 kcal Atomic # 7 Polarization: -56.80 SS G_CDS: -0.71 Total: -57.52 kcal Atomic # 8 Polarization: -14.83 SS G_CDS: 0.09 Total: -14.74 kcal Atomic # 14 Polarization: 20.20 SS G_CDS: -5.02 Total: 15.18 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -30.41 -10.54 -40.95 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563592746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.359 kcal (2) G-P(sol) polarization free energy of solvation -30.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.051 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.538 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.949 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds