Wall clock time and date at job start Tue Mar 31 2020 05:22:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31521 * 1 3 3 Si 1.86796 * 119.99482 * 2 1 4 4 H 1.48501 * 109.47071 * 179.97438 * 3 2 1 5 5 H 1.48497 * 109.47352 * 299.99480 * 3 2 1 6 6 H 1.48502 * 109.47468 * 59.99557 * 3 2 1 7 7 C 1.37870 * 120.00408 * 179.97438 * 2 1 3 8 8 H 1.07998 * 119.99942 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99847 * 0.02562 * 7 2 1 10 10 N 1.46902 * 109.46851 * 179.97438 * 9 7 2 11 11 C 1.46904 * 110.99792 * 179.97438 * 10 9 7 12 12 H 1.08995 * 109.49609 * 324.93562 * 11 10 9 13 13 C 1.53038 * 109.49714 * 204.83678 * 11 10 9 14 14 C 1.53042 * 109.53927 * 178.68599 * 13 11 10 15 15 C 1.53187 * 109.31287 * 61.36456 * 14 13 11 16 16 N 1.46966 * 108.88867 * 305.44317 * 15 14 13 17 17 C 1.34775 * 120.65671 * 233.53395 * 16 15 14 18 18 O 1.21586 * 120.00128 * 168.98467 * 17 16 15 19 19 N 1.34780 * 119.99847 * 348.99325 * 17 16 15 20 20 C 1.47024 * 125.64848 * 8.52049 * 19 17 16 21 21 C 1.54316 * 107.27335 * 180.96915 * 20 19 17 22 22 C 1.55154 * 102.86271 * 22.52939 * 21 20 19 23 23 C 1.47422 * 125.64647 * 188.83234 * 19 17 16 24 24 C 1.46922 * 118.71473 * 53.35983 * 16 15 14 25 25 H 0.96990 * 120.00534 * 0.02562 * 1 2 3 26 26 H 1.08996 * 109.47106 * 59.99985 * 9 7 2 27 27 H 1.08996 * 109.47391 * 299.99440 * 9 7 2 28 28 H 1.00903 * 111.00150 * 303.94840 * 10 9 7 29 29 H 1.09004 * 109.46230 * 298.70376 * 13 11 10 30 30 H 1.08997 * 109.45923 * 58.66638 * 13 11 10 31 31 H 1.09000 * 109.49979 * 181.31714 * 14 13 11 32 32 H 1.09002 * 109.49125 * 301.38290 * 14 13 11 33 33 H 1.09001 * 109.58810 * 65.15432 * 15 14 13 34 34 H 1.09009 * 109.58632 * 185.58187 * 15 14 13 35 35 H 1.08998 * 109.88263 * 300.51381 * 20 19 17 36 36 H 1.09001 * 109.88311 * 61.67711 * 20 19 17 37 37 H 1.08994 * 110.92531 * 264.10878 * 21 20 19 38 38 H 1.09004 * 110.58397 * 140.78530 * 21 20 19 39 39 H 1.09009 * 111.00198 * 206.22712 * 22 21 20 40 40 H 1.08994 * 111.00618 * 82.37937 * 22 21 20 41 41 H 1.09001 * 110.36410 * 274.66612 * 23 19 17 42 42 H 1.08994 * 110.36825 * 36.99473 * 23 19 17 43 43 H 1.08993 * 109.58913 * 186.77897 * 24 16 15 44 44 H 1.09004 * 109.59024 * 66.49126 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3466 0.0006 5 1 1.8904 2.3964 -1.2125 6 1 1.8902 2.3966 1.2124 7 6 2.0046 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2512 -2.4991 0.0005 10 7 2.2059 -3.6156 0.0005 11 6 1.5057 -4.9070 0.0011 12 1 0.5932 -4.8257 0.5917 13 6 2.4133 -5.9799 0.6071 14 6 1.6727 -7.3188 0.6383 15 6 1.3198 -7.7360 -0.7928 16 7 0.5707 -6.6468 -1.4349 17 6 -0.6267 -6.8806 -2.0074 18 8 -1.3263 -5.9491 -2.3557 19 7 -1.0488 -8.1469 -2.1938 20 6 -0.3953 -9.3542 -1.6675 21 6 -1.2153 -10.5679 -2.1531 22 6 -1.9524 -10.0103 -3.3994 23 6 -2.2387 -8.5513 -2.9645 24 6 1.1508 -5.2969 -1.4373 25 1 -0.4850 0.8399 -0.0004 26 1 0.6249 -2.5571 -0.8896 27 1 0.6243 -2.5567 0.8903 28 1 2.8407 -3.5485 -0.7809 29 1 3.3145 -6.0774 0.0017 30 1 2.6872 -5.6927 1.6223 31 1 2.3112 -8.0773 1.0914 32 1 0.7590 -7.2155 1.2235 33 1 2.2346 -7.9277 -1.3537 34 1 0.7070 -8.6373 -0.7701 35 1 0.6249 -9.4183 -2.0459 36 1 -0.3876 -9.3265 -0.5779 37 1 -1.9289 -10.8849 -1.3927 38 1 -0.5555 -11.3898 -2.4310 39 1 -2.8802 -10.5534 -3.5800 40 1 -1.3087 -10.0369 -4.2785 41 1 -3.1290 -8.5103 -2.3371 42 1 -2.3598 -7.9118 -3.8388 43 1 0.4266 -4.5887 -1.8398 44 1 2.0515 -5.2872 -2.0512 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566910781.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:24 Heat of formation + Delta-G solvation = 11.248559 kcal Electronic energy + Delta-G solvation = -22923.366093 eV Core-core repulsion = 19683.905320 eV Total energy + Delta-G solvation = -3239.460773 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.80030 -38.28531 -37.14612 -34.98224 -32.83113 -31.95210 -31.50939 -30.08647 -28.63164 -25.88138 -25.70730 -23.08947 -22.60520 -21.59800 -21.21256 -20.42567 -19.54833 -17.09072 -16.85814 -16.35995 -15.99276 -15.19016 -14.85225 -14.59251 -14.33396 -14.11514 -13.94682 -13.66645 -13.32727 -13.10034 -13.05623 -12.88624 -12.44929 -12.39426 -12.08906 -11.67019 -11.51907 -11.32614 -11.16294 -11.04570 -10.78391 -10.69648 -10.59550 -10.27894 -10.23153 -9.92187 -9.68571 -9.09613 -8.88790 -8.50447 -8.29225 -7.24997 -5.96942 -3.99670 2.54524 3.24034 3.34935 3.41744 3.46690 3.70268 4.15864 4.31492 4.47163 4.51991 4.78483 4.90099 4.99776 5.03377 5.07468 5.21256 5.31724 5.34507 5.37909 5.38494 5.45325 5.49448 5.57257 5.63556 5.66423 5.82766 5.85577 5.97126 5.99966 6.05814 6.17580 6.26918 6.55215 6.59891 6.67130 7.05852 7.32221 7.49585 7.82703 7.96496 8.17523 8.40083 8.62675 8.67305 9.09569 9.64935 11.13952 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.029046 B = 0.003642 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 963.760253 B = 7685.284701 C = 8429.117245 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.895 5.895 2 C 0.055 3.945 3 Si 0.899 3.101 4 H -0.272 1.272 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.515 4.515 8 H 0.063 0.937 9 C 0.192 3.808 10 N -0.678 5.678 11 C 0.076 3.924 12 H 0.074 0.926 13 C -0.106 4.106 14 C -0.133 4.133 15 C 0.049 3.951 16 N -0.618 5.618 17 C 0.722 3.278 18 O -0.579 6.579 19 N -0.641 5.641 20 C 0.095 3.905 21 C -0.136 4.136 22 C -0.134 4.134 23 C 0.125 3.875 24 C 0.103 3.897 25 H 0.261 0.739 26 H -0.010 1.010 27 H 0.027 0.973 28 H 0.329 0.671 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.071 0.929 32 H 0.063 0.937 33 H 0.060 0.940 34 H 0.127 0.873 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.082 0.918 39 H 0.084 0.916 40 H 0.075 0.925 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.093 0.907 44 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.116 -25.560 -3.991 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.210 1.210 7 C -0.553 4.553 8 H 0.081 0.919 9 C 0.066 3.934 10 N -0.307 5.307 11 C -0.036 4.036 12 H 0.092 0.908 13 C -0.144 4.144 14 C -0.172 4.172 15 C -0.073 4.073 16 N -0.355 5.355 17 C 0.425 3.575 18 O -0.456 6.456 19 N -0.381 5.381 20 C -0.027 4.027 21 C -0.174 4.174 22 C -0.172 4.172 23 C 0.002 3.998 24 C -0.022 4.022 25 H 0.070 0.930 26 H 0.008 0.992 27 H 0.045 0.955 28 H 0.146 0.854 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.090 0.910 32 H 0.082 0.918 33 H 0.079 0.921 34 H 0.144 0.856 35 H 0.093 0.907 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.094 0.906 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.112 0.888 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.537 -24.755 -3.476 25.004 hybrid contribution 0.167 0.962 -0.808 1.268 sum -0.371 -23.793 -4.284 24.179 Atomic orbital electron populations 1.69987 1.06060 1.26653 1.50738 1.25004 0.94862 0.99371 0.95399 0.86435 0.80010 0.83433 0.77469 1.19679 1.21109 1.21041 1.21205 0.93483 0.90232 1.50425 0.91928 1.19624 0.90562 0.87226 0.96031 1.60854 1.20660 1.00797 1.48421 1.21885 0.97013 0.91066 0.93663 0.90791 1.21514 0.97961 0.93049 1.01908 1.21922 1.00927 0.98225 0.96140 1.23314 0.97733 0.92600 0.93629 1.47181 1.18700 1.10354 1.59291 1.15488 0.81486 0.81553 0.78949 1.90965 1.55336 1.41471 1.57847 1.47548 1.29657 1.03871 1.57038 1.22400 0.97091 0.85058 0.98169 1.22746 0.99518 0.96985 0.98139 1.22803 1.01290 0.95139 0.97965 1.22044 0.87421 0.94748 0.95589 1.22492 0.98387 0.82071 0.99240 0.92960 0.99174 0.95452 0.85439 0.92294 0.91124 0.91040 0.91811 0.92147 0.85617 0.90670 0.90413 0.90369 0.89930 0.89727 0.90583 0.91685 0.90483 0.88829 0.92183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.80 13.29 55.43 0.74 -27.07 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.90 22.28 29.54 -169.99 -5.02 17.25 16 4 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 6 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 7 C -0.51 -15.00 9.32 -34.44 -0.32 -15.32 16 8 H 0.06 1.78 7.81 -52.49 -0.41 1.37 16 9 C 0.19 5.24 5.24 -4.97 -0.03 5.21 16 10 N -0.68 -14.82 6.24 -107.86 -0.67 -15.49 16 11 C 0.08 1.40 2.62 -67.59 -0.18 1.22 16 12 H 0.07 1.55 7.80 -51.93 -0.41 1.14 16 13 C -0.11 -1.53 5.49 -26.69 -0.15 -1.67 16 14 C -0.13 -1.51 6.08 -26.61 -0.16 -1.67 16 15 C 0.05 0.54 5.25 -3.69 -0.02 0.52 16 16 N -0.62 -9.54 2.98 -178.46 -0.53 -10.07 16 17 C 0.72 12.30 8.33 -86.92 -0.72 11.58 16 18 O -0.58 -12.72 16.13 5.29 0.09 -12.64 16 19 N -0.64 -7.92 3.33 -218.78 -0.73 -8.65 16 20 C 0.10 0.74 4.87 -3.07 -0.01 0.73 16 21 C -0.14 -0.72 6.95 -24.90 -0.17 -0.90 16 22 C -0.13 -0.84 7.08 -24.58 -0.17 -1.01 16 23 C 0.13 1.28 6.88 -2.53 -0.02 1.26 16 24 C 0.10 1.83 5.70 -3.71 -0.02 1.81 16 25 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 26 H -0.01 -0.28 7.56 -51.93 -0.39 -0.67 16 27 H 0.03 0.81 8.06 -51.93 -0.42 0.39 16 28 H 0.33 6.81 8.41 -39.29 -0.33 6.48 16 29 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 30 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 33 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 34 H 0.13 1.08 1.88 -102.25 -0.19 0.89 16 35 H 0.08 0.53 6.59 -51.93 -0.34 0.19 16 36 H 0.08 0.56 6.67 -51.93 -0.35 0.21 16 37 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 38 H 0.08 0.31 8.14 -51.93 -0.42 -0.12 16 39 H 0.08 0.39 8.14 -51.92 -0.42 -0.03 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.08 0.89 8.12 -51.93 -0.42 0.47 16 43 H 0.09 2.04 6.49 -51.93 -0.34 1.70 16 44 H 0.06 0.99 8.04 -51.93 -0.42 0.57 16 LS Contribution 339.25 15.07 5.11 5.11 Total: -1.00 -35.25 339.25 -10.47 -45.72 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -7.38 Total: 2.53 kcal Atomic # 6 Polarization: 5.36 SS G_CDS: -2.07 Total: 3.29 kcal Atomic # 7 Polarization: -60.08 SS G_CDS: -1.20 Total: -61.27 kcal Atomic # 8 Polarization: -12.72 SS G_CDS: 0.09 Total: -12.64 kcal Atomic # 14 Polarization: 22.28 SS G_CDS: -5.02 Total: 17.25 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -35.25 -10.47 -45.72 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566910781.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.969 kcal (2) G-P(sol) polarization free energy of solvation -35.251 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.469 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.721 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.249 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds