Wall clock time and date at job start Tue Mar 31 2020 05:22:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 120.00227 * 2 1 4 4 H 1.48500 * 109.47201 * 270.00238 * 3 2 1 5 5 H 1.48507 * 109.47130 * 30.00069 * 3 2 1 6 6 H 1.48501 * 109.47165 * 149.99869 * 3 2 1 7 7 C 1.37878 * 119.99879 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99919 * 359.97438 * 7 2 1 9 9 C 1.50697 * 120.00151 * 179.97438 * 7 2 1 10 10 N 1.46893 * 109.47278 * 179.97438 * 9 7 2 11 11 C 1.46897 * 111.00171 * 180.02562 * 10 9 7 12 12 H 1.09005 * 109.52445 * 34.92267 * 11 10 9 13 13 C 1.53046 * 109.50127 * 154.99613 * 11 10 9 14 14 C 1.53039 * 109.54162 * 181.31746 * 13 11 10 15 15 C 1.53193 * 109.30964 * 298.63815 * 14 13 11 16 16 N 1.46929 * 108.77757 * 54.63355 * 15 14 13 17 17 C 1.34787 * 120.62863 * 126.36663 * 16 15 14 18 18 O 1.21578 * 119.99658 * 167.79866 * 17 16 15 19 19 N 1.34776 * 119.99818 * 347.79582 * 17 16 15 20 20 C 1.47020 * 125.65095 * 6.20474 * 19 17 16 21 21 C 1.54311 * 107.27470 * 180.96519 * 20 19 17 22 22 C 1.55159 * 102.86564 * 22.52306 * 21 20 19 23 23 C 1.47425 * 125.64515 * 186.50074 * 19 17 16 24 24 C 1.46919 * 118.74045 * 306.39116 * 16 15 14 25 25 H 0.97008 * 119.99563 * 359.97438 * 1 2 3 26 26 H 1.08998 * 109.47101 * 59.99808 * 9 7 2 27 27 H 1.09000 * 109.47171 * 300.00290 * 9 7 2 28 28 H 1.00905 * 110.99677 * 303.95147 * 10 9 7 29 29 H 1.09003 * 109.45594 * 61.29588 * 13 11 10 30 30 H 1.08998 * 109.44774 * 301.33566 * 13 11 10 31 31 H 1.08998 * 109.50120 * 178.68925 * 14 13 11 32 32 H 1.09000 * 109.52225 * 58.60400 * 14 13 11 33 33 H 1.09004 * 109.58621 * 174.42283 * 15 14 13 34 34 H 1.09000 * 109.58960 * 294.84707 * 15 14 13 35 35 H 1.09000 * 109.87890 * 300.50870 * 20 19 17 36 36 H 1.09005 * 109.88577 * 61.67287 * 20 19 17 37 37 H 1.09005 * 110.92487 * 264.10529 * 21 20 19 38 38 H 1.09002 * 110.74316 * 140.85188 * 21 20 19 39 39 H 1.08997 * 111.00398 * 206.23233 * 22 21 20 40 40 H 1.08995 * 111.03608 * 82.39377 * 22 21 20 41 41 H 1.08991 * 110.36926 * 274.68205 * 23 19 17 42 42 H 1.09001 * 110.36292 * 37.00726 * 23 19 17 43 43 H 1.09000 * 109.58463 * 293.82076 * 24 16 15 44 44 H 1.08996 * 109.70541 * 173.46484 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6527 0.7001 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 7 4.0011 -2.5791 -0.0010 11 6 5.4696 -2.6183 -0.0009 12 1 5.8562 -1.7860 0.5871 13 6 5.9453 -3.9389 0.6090 14 6 7.4752 -3.9669 0.6396 15 6 8.0123 -3.8742 -0.7921 16 7 7.4432 -2.6816 -1.4344 17 6 8.2447 -1.7618 -2.0074 18 8 7.7686 -0.9018 -2.7228 19 7 9.5740 -1.7954 -1.7872 20 6 10.2949 -2.8468 -1.0548 21 6 11.7863 -2.4515 -1.0356 22 6 11.7399 -0.9168 -1.2592 23 6 10.5451 -0.7809 -2.2357 24 6 5.9841 -2.5104 -1.4398 25 1 -0.4850 0.8401 0.0004 26 1 3.8752 -0.6805 0.8888 27 1 3.8745 -0.6801 -0.8911 28 1 3.6259 -3.0952 0.7807 29 1 5.5789 -4.7700 0.0063 30 1 5.5601 -4.0293 1.6246 31 1 7.8130 -4.8976 1.0953 32 1 7.8433 -3.1221 1.2217 33 1 9.0991 -3.7940 -0.7702 34 1 7.7207 -4.7640 -1.3502 35 1 9.9146 -2.9158 -0.0356 36 1 10.1733 -3.8031 -1.5636 37 1 12.3297 -2.9426 -1.8429 38 1 12.2358 -2.6872 -0.0709 39 1 12.6621 -0.5608 -1.7184 40 1 11.5429 -0.3911 -0.3250 41 1 10.8645 -0.9869 -3.2572 42 1 10.1106 0.2164 -2.1670 43 1 5.5271 -3.2889 -2.0506 44 1 5.7304 -1.5312 -1.8461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000566910782.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:26 Heat of formation + Delta-G solvation = 18.880378 kcal Electronic energy + Delta-G solvation = -23080.491923 eV Core-core repulsion = 19841.362090 eV Total energy + Delta-G solvation = -3239.129833 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.89064 -38.32704 -37.26924 -35.13709 -32.83154 -31.98597 -31.62646 -30.29251 -28.87610 -26.32673 -25.88086 -23.11932 -22.59954 -21.70849 -20.87647 -20.51193 -19.46299 -17.39871 -16.76027 -16.68539 -16.04359 -15.25674 -15.07683 -14.72848 -14.37066 -14.09863 -13.95884 -13.81944 -13.63538 -13.31910 -12.82452 -12.66698 -12.58852 -12.48572 -12.43796 -11.91720 -11.77809 -11.56062 -11.34533 -11.13868 -10.94244 -10.74559 -10.48450 -10.30758 -10.07045 -9.90167 -9.70601 -9.25521 -8.92540 -8.55576 -8.34607 -7.51065 -6.02907 -4.00807 2.49037 3.19068 3.34601 3.40986 3.45134 3.64482 4.09668 4.27824 4.46465 4.48504 4.67532 4.85070 4.89062 4.90510 4.95662 5.04478 5.14557 5.30106 5.34518 5.38322 5.41808 5.45779 5.51812 5.58918 5.60061 5.71656 5.78753 5.81683 5.89961 5.97696 6.12922 6.15498 6.36193 6.46550 6.59336 6.84610 7.01421 7.05466 7.63322 7.88047 7.93095 8.32240 8.59902 8.66591 9.04560 9.59477 11.10218 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.022333 B = 0.004292 C = 0.003816 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1253.425548 B = 6522.019039 C = 7335.071811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.070 3.930 3 Si 0.876 3.124 4 H -0.274 1.274 5 H -0.286 1.286 6 H -0.269 1.269 7 C -0.516 4.516 8 H 0.080 0.920 9 C 0.164 3.836 10 N -0.673 5.673 11 C 0.072 3.928 12 H 0.037 0.963 13 C -0.120 4.120 14 C -0.130 4.130 15 C 0.040 3.960 16 N -0.621 5.621 17 C 0.724 3.276 18 O -0.582 6.582 19 N -0.640 5.640 20 C 0.094 3.906 21 C -0.136 4.136 22 C -0.134 4.134 23 C 0.125 3.875 24 C 0.143 3.857 25 H 0.264 0.736 26 H -0.016 1.016 27 H 0.024 0.976 28 H 0.339 0.661 29 H 0.072 0.928 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.062 0.938 33 H 0.134 0.866 34 H 0.063 0.937 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.083 0.917 39 H 0.084 0.916 40 H 0.076 0.924 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.073 0.927 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.220 -8.604 0.767 28.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.132 4.132 3 Si 0.703 3.297 4 H -0.200 1.200 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.554 4.554 8 H 0.098 0.902 9 C 0.036 3.964 10 N -0.305 5.305 11 C -0.039 4.039 12 H 0.055 0.945 13 C -0.158 4.158 14 C -0.169 4.169 15 C -0.082 4.082 16 N -0.358 5.358 17 C 0.427 3.573 18 O -0.459 6.459 19 N -0.380 5.380 20 C -0.028 4.028 21 C -0.174 4.174 22 C -0.172 4.172 23 C 0.002 3.998 24 C 0.020 3.980 25 H 0.073 0.927 26 H 0.001 0.999 27 H 0.042 0.958 28 H 0.158 0.842 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.150 0.850 34 H 0.081 0.919 35 H 0.096 0.904 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.101 0.899 39 H 0.103 0.897 40 H 0.095 0.905 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.091 0.909 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 26.600 -8.058 -0.347 27.796 hybrid contribution 0.389 1.078 0.995 1.518 sum 26.989 -6.980 0.649 27.885 Atomic orbital electron populations 1.69903 1.06133 1.26869 1.51022 1.24885 0.94737 0.98920 0.94652 0.86852 0.80172 0.83864 0.78832 1.19952 1.21199 1.19347 1.21042 0.88859 0.94812 1.50675 0.90229 1.20066 0.96665 0.84814 0.94863 1.60360 1.03397 1.17089 1.49646 1.21792 0.90739 0.96155 0.95261 0.94539 1.21704 0.94729 0.98301 1.01055 1.21878 0.96606 1.01934 0.96500 1.23425 1.03303 0.88043 0.93412 1.47183 1.06912 1.22199 1.59505 1.15443 0.79456 0.81944 0.80423 1.90942 1.73570 1.40021 1.41356 1.47564 1.04997 1.25880 1.59580 1.22337 0.92064 0.91390 0.97030 1.22745 0.95132 0.96405 1.03091 1.22805 0.98184 0.96109 1.00141 1.22050 0.87826 0.92511 0.97448 1.21509 0.75789 1.03869 0.96875 0.92657 0.99858 0.95834 0.84218 0.90960 0.91842 0.90885 0.91925 0.84971 0.91867 0.90407 0.90403 0.90378 0.89883 0.89701 0.90508 0.91708 0.90406 0.90908 0.89167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.29 13.96 55.43 0.77 -27.52 16 2 C 0.07 2.09 5.47 -17.82 -0.10 2.00 16 3 Si 0.88 22.64 27.47 -169.99 -4.67 17.98 16 4 H -0.27 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 6 H -0.27 -6.79 6.54 56.52 0.37 -6.42 16 7 C -0.52 -15.15 9.87 -34.44 -0.34 -15.49 16 8 H 0.08 2.50 8.06 -52.48 -0.42 2.08 16 9 C 0.16 4.14 4.31 -4.98 -0.02 4.12 16 10 N -0.67 -14.12 6.30 -107.87 -0.68 -14.80 16 11 C 0.07 1.25 2.64 -67.59 -0.18 1.07 16 12 H 0.04 0.70 7.80 -51.93 -0.41 0.29 16 13 C -0.12 -1.56 5.17 -26.69 -0.14 -1.70 16 14 C -0.13 -1.32 5.93 -26.61 -0.16 -1.48 16 15 C 0.04 0.41 5.62 -3.71 -0.02 0.39 16 16 N -0.62 -9.29 2.97 -178.50 -0.53 -9.82 16 17 C 0.72 11.90 8.32 -86.91 -0.72 11.17 16 18 O -0.58 -12.22 16.17 5.30 0.09 -12.13 16 19 N -0.64 -7.60 3.33 -226.78 -0.75 -8.36 16 20 C 0.09 0.70 4.85 -3.07 -0.01 0.68 16 21 C -0.14 -0.68 6.95 -24.90 -0.17 -0.85 16 22 C -0.13 -0.82 7.08 -24.58 -0.17 -1.00 16 23 C 0.12 1.23 6.89 -2.53 -0.02 1.21 16 24 C 0.14 2.54 5.86 -3.71 -0.02 2.51 16 25 H 0.26 7.75 8.31 -40.82 -0.34 7.41 16 26 H -0.02 -0.42 7.11 -51.93 -0.37 -0.79 16 27 H 0.02 0.62 7.00 -51.93 -0.36 0.26 16 28 H 0.34 6.76 8.32 -39.29 -0.33 6.43 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.80 8.10 -51.93 -0.42 0.38 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.13 1.06 1.53 -110.78 -0.17 0.89 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.08 0.55 6.60 -51.93 -0.34 0.21 16 36 H 0.08 0.49 6.74 -51.93 -0.35 0.14 16 37 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.08 0.29 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.38 8.14 -51.93 -0.42 -0.05 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.08 0.89 8.10 -51.93 -0.42 0.47 16 43 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 44 H 0.09 1.91 6.60 -51.93 -0.34 1.57 16 LS Contribution 335.60 15.07 5.06 5.06 Total: -1.00 -35.47 335.60 -10.12 -45.59 By element: Atomic # 1 Polarization: 8.69 SS G_CDS: -7.33 Total: 1.36 kcal Atomic # 6 Polarization: 4.72 SS G_CDS: -2.08 Total: 2.65 kcal Atomic # 7 Polarization: -59.31 SS G_CDS: -1.19 Total: -60.50 kcal Atomic # 8 Polarization: -12.22 SS G_CDS: 0.09 Total: -12.13 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.98 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.47 -10.12 -45.59 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000566910782.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.473 kcal (2) G-P(sol) polarization free energy of solvation -35.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.593 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds