Wall clock time and date at job start Tue Mar 31 2020 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53004 * 109.47008 * 2 1 4 4 H 1.08993 * 109.46910 * 185.15874 * 3 2 1 5 5 C 1.50702 * 109.47011 * 305.16199 * 3 2 1 6 6 H 1.07997 * 120.00182 * 119.99685 * 5 3 2 7 7 C 1.37880 * 119.99599 * 299.99857 * 5 3 2 8 8 N 1.31519 * 120.00248 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99939 * 180.02562 * 7 5 3 10 10 H 1.48504 * 109.47172 * 89.99678 * 9 7 5 11 11 H 1.48495 * 109.47017 * 210.00061 * 9 7 5 12 12 H 1.48505 * 109.47119 * 329.99910 * 9 7 5 13 13 N 1.46901 * 109.47087 * 65.15780 * 3 2 1 14 14 C 1.46902 * 110.99729 * 85.90058 * 13 3 2 15 15 C 1.50702 * 109.46815 * 174.84165 * 14 13 3 16 16 N 1.31133 * 126.55452 * 90.25151 * 15 14 13 17 17 C 1.34502 * 105.61302 * 180.12326 * 16 15 14 18 18 C 1.50693 * 126.28488 * 179.90612 * 17 16 15 19 19 C 1.52999 * 109.47226 * 269.71001 * 18 17 16 20 20 C 1.52997 * 109.47563 * 179.97438 * 19 18 17 21 21 C 1.52998 * 109.47591 * 174.99563 * 20 19 18 22 22 C 1.52998 * 109.47293 * 295.00505 * 20 19 18 23 23 N 1.29942 * 107.42354 * 359.63480 * 17 16 15 24 24 O 1.21303 * 110.25599 * 0.23512 * 23 17 16 25 25 H 1.08994 * 109.47084 * 294.84426 * 1 2 3 26 26 H 1.09000 * 109.46905 * 54.84902 * 1 2 3 27 27 H 1.09007 * 109.46920 * 174.84635 * 1 2 3 28 28 H 1.08996 * 109.47488 * 239.99738 * 2 1 3 29 29 H 1.08999 * 109.47127 * 119.99819 * 2 1 3 30 30 H 0.96993 * 120.00136 * 180.02562 * 8 7 5 31 31 H 1.00898 * 110.99866 * 321.94951 * 13 3 2 32 32 H 1.08990 * 109.47295 * 54.84183 * 14 13 3 33 33 H 1.09002 * 109.47013 * 294.83519 * 14 13 3 34 34 H 1.09006 * 109.47201 * 29.70865 * 18 17 16 35 35 H 1.09002 * 109.47225 * 149.70804 * 18 17 16 36 36 H 1.08997 * 109.47051 * 300.00312 * 19 18 17 37 37 H 1.09002 * 109.47180 * 59.99774 * 19 18 17 38 38 H 1.09008 * 109.46860 * 54.99806 * 20 19 18 39 39 H 1.09003 * 109.46382 * 60.00294 * 21 20 19 40 40 H 1.08993 * 109.47284 * 179.97438 * 21 20 19 41 41 H 1.08999 * 109.47350 * 300.00707 * 21 20 19 42 42 H 1.08999 * 109.47490 * 59.98959 * 22 20 19 43 43 H 1.09004 * 109.47436 * 180.02562 * 22 20 19 44 44 H 1.09008 * 109.46596 * 299.99462 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1260 1.4439 -0.0924 5 6 1.4360 2.1889 -1.1616 6 1 0.8268 3.0627 -0.9839 7 6 1.6611 1.7559 -2.4511 8 7 2.4026 0.6914 -2.6675 9 14 0.9131 2.6814 -3.8910 10 1 1.8552 3.7357 -4.3451 11 1 0.6536 1.7357 -5.0061 12 1 -0.3644 3.3085 -3.4665 13 7 1.6546 2.0982 1.2568 14 6 2.6432 1.8367 2.3116 15 6 2.2827 2.6250 3.5444 16 7 1.5174 2.2249 4.5311 17 6 1.4787 3.2521 5.3987 18 6 0.7251 3.2898 6.7031 19 6 -0.6815 3.8420 6.4636 20 6 -1.4470 3.8798 7.7879 21 6 -2.8070 4.5466 7.5721 22 6 -1.6539 2.4523 8.2982 23 7 2.2152 4.2036 4.9081 24 8 2.6862 3.8636 3.8432 25 1 -0.3633 0.4318 0.9325 26 1 -0.3633 0.5917 -0.8403 27 1 -0.3633 -1.0236 -0.0923 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 2.5613 0.3871 -3.5746 31 1 0.7320 1.8104 1.5466 32 1 3.6321 2.1364 1.9650 33 1 2.6482 0.7729 2.5492 34 1 0.6549 2.2816 7.1115 35 1 1.2522 3.9318 7.4088 36 1 -0.6114 4.8501 6.0552 37 1 -1.2087 3.2000 5.7579 38 1 -0.8757 4.4487 8.5216 39 1 -3.3781 3.9777 6.8384 40 1 -3.3524 4.5730 8.5154 41 1 -2.6595 5.5635 7.2085 42 1 -0.6850 1.9773 8.4519 43 1 -2.1996 2.4792 9.2414 44 1 -2.2251 1.8835 7.5645 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567246097.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:42 Heat of formation + Delta-G solvation = 39.358377 kcal Electronic energy + Delta-G solvation = -21980.247511 eV Core-core repulsion = 18742.005671 eV Total energy + Delta-G solvation = -3238.241840 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.31406 -37.49596 -36.90125 -35.50132 -33.66362 -32.08863 -30.80445 -30.07098 -27.42163 -27.12990 -25.14469 -25.02012 -23.33478 -22.87105 -20.92552 -20.23061 -19.46084 -17.78277 -17.31001 -16.29058 -15.57242 -15.11729 -14.92824 -14.77645 -14.47476 -14.20635 -13.62977 -13.50482 -12.98987 -12.93947 -12.59648 -12.54321 -12.27611 -12.14589 -12.03546 -11.76700 -11.58422 -11.46030 -10.98359 -10.94144 -10.91421 -10.85033 -10.80667 -10.69262 -10.56791 -10.08195 -10.00655 -9.66135 -9.60557 -9.11359 -8.40279 -7.51088 -6.03981 -4.05782 1.38052 2.40026 3.10710 3.30899 3.37710 3.41641 3.74632 4.17520 4.40651 4.60222 4.63415 4.67919 4.98207 5.19665 5.22747 5.27516 5.28424 5.39351 5.40646 5.43083 5.57630 5.61967 5.70317 5.78794 5.80378 5.80700 5.94550 6.01702 6.09304 6.16346 6.21493 6.29693 6.31515 6.49271 6.83190 7.07190 7.16150 7.45295 7.58684 7.79097 8.12805 8.29618 8.40776 8.45205 8.99087 9.57968 11.03108 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.021243 B = 0.003280 C = 0.003169 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1317.782031 B = 8533.881474 C = 8832.848952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.147 4.147 3 C 0.218 3.782 4 H 0.039 0.961 5 C -0.491 4.491 6 H 0.063 0.937 7 C 0.059 3.941 8 N -0.895 5.895 9 Si 0.895 3.105 10 H -0.281 1.281 11 H -0.288 1.288 12 H -0.274 1.274 13 N -0.678 5.678 14 C 0.144 3.856 15 C 0.210 3.790 16 N -0.490 5.490 17 C 0.165 3.835 18 C -0.026 4.026 19 C -0.110 4.110 20 C -0.094 4.094 21 C -0.148 4.148 22 C -0.151 4.151 23 N -0.393 5.393 24 O 0.081 5.919 25 H 0.027 0.973 26 H 0.070 0.930 27 H 0.025 0.975 28 H 0.096 0.904 29 H 0.013 0.987 30 H 0.260 0.740 31 H 0.336 0.664 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.095 0.905 35 H 0.087 0.913 36 H 0.066 0.934 37 H 0.071 0.929 38 H 0.071 0.929 39 H 0.056 0.944 40 H 0.054 0.946 41 H 0.054 0.946 42 H 0.057 0.943 43 H 0.053 0.947 44 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.478 2.294 18.144 18.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.187 4.187 3 C 0.111 3.889 4 H 0.057 0.943 5 C -0.530 4.530 6 H 0.081 0.919 7 C -0.142 4.142 8 N -0.534 5.534 9 Si 0.723 3.277 10 H -0.207 1.207 11 H -0.214 1.214 12 H -0.199 1.199 13 N -0.311 5.311 14 C 0.012 3.988 15 C -0.010 4.010 16 N -0.224 5.224 17 C -0.108 4.108 18 C -0.065 4.065 19 C -0.149 4.149 20 C -0.113 4.113 21 C -0.205 4.205 22 C -0.209 4.209 23 N -0.102 5.102 24 O 0.024 5.976 25 H 0.046 0.954 26 H 0.089 0.911 27 H 0.044 0.956 28 H 0.115 0.885 29 H 0.032 0.968 30 H 0.070 0.930 31 H 0.155 0.845 32 H 0.123 0.877 33 H 0.088 0.912 34 H 0.113 0.887 35 H 0.105 0.895 36 H 0.085 0.915 37 H 0.090 0.910 38 H 0.089 0.911 39 H 0.075 0.925 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.072 0.928 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.254 3.278 18.434 19.200 hybrid contribution -0.485 -0.563 -0.812 1.100 sum -4.739 2.715 17.622 18.449 Atomic orbital electron populations 1.21608 0.97536 0.98909 1.00850 1.22135 0.95237 1.00685 1.00604 1.19300 0.96453 0.88798 0.84332 0.94281 1.21004 1.30913 1.11669 0.89438 0.91853 1.24891 0.95453 0.95117 0.98729 1.69867 1.38833 1.23823 1.20896 0.86537 0.79639 0.79515 0.81964 1.20726 1.21420 1.19912 1.60889 1.03694 1.63718 1.02826 1.20486 0.99353 0.94641 0.84322 1.29137 0.91029 0.83531 0.97337 1.71907 1.19502 1.28119 1.02905 1.25772 0.98759 0.86263 0.99976 1.19997 0.94236 1.03798 0.88463 1.21635 0.93644 1.01754 0.97879 1.21096 0.96529 0.96974 0.96695 1.21835 0.96492 1.00561 1.01645 1.21922 1.01867 0.96106 1.00960 1.74590 1.14787 1.23457 0.97343 1.85300 1.54286 1.30066 1.27949 0.95370 0.91143 0.95571 0.88550 0.96804 0.92974 0.84515 0.87746 0.91171 0.88687 0.89483 0.91535 0.91037 0.91089 0.92504 0.92660 0.92649 0.92373 0.92777 0.92398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 9.40 37.16 0.35 -2.35 16 2 C -0.15 -3.23 5.51 -26.73 -0.15 -3.37 16 3 C 0.22 5.01 2.33 -68.86 -0.16 4.85 16 4 H 0.04 0.97 7.70 -51.93 -0.40 0.57 16 5 C -0.49 -12.72 7.25 -34.44 -0.25 -12.97 16 6 H 0.06 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.55 5.28 -17.82 -0.09 1.46 16 8 N -0.89 -24.21 11.38 55.43 0.63 -23.58 16 9 Si 0.90 20.79 29.54 -169.99 -5.02 15.77 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 12 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 13 N -0.68 -13.51 6.19 -109.22 -0.68 -14.19 16 14 C 0.14 2.38 6.13 -4.97 -0.03 2.35 16 15 C 0.21 3.50 8.07 -13.05 -0.11 3.39 16 16 N -0.49 -8.06 11.55 -9.86 -0.11 -8.17 16 17 C 0.17 2.49 7.47 -156.37 -1.17 1.33 16 18 C -0.03 -0.29 5.60 -27.89 -0.16 -0.44 16 19 C -0.11 -1.13 4.66 -26.73 -0.12 -1.25 16 20 C -0.09 -0.76 2.92 -90.62 -0.26 -1.02 16 21 C -0.15 -1.13 9.19 37.16 0.34 -0.79 16 22 C -0.15 -1.13 8.95 37.16 0.33 -0.80 16 23 N -0.39 -6.51 12.16 30.90 0.38 -6.14 16 24 O 0.08 1.39 11.31 18.09 0.20 1.59 16 25 H 0.03 0.52 6.63 -51.93 -0.34 0.18 16 26 H 0.07 1.59 6.85 -51.93 -0.36 1.23 16 27 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.10 2.39 6.22 -51.93 -0.32 2.07 16 29 H 0.01 0.27 7.50 -51.93 -0.39 -0.12 16 30 H 0.26 6.81 8.31 -40.82 -0.34 6.47 16 31 H 0.34 6.63 6.69 -39.29 -0.26 6.37 16 32 H 0.10 1.62 7.93 -51.93 -0.41 1.21 16 33 H 0.07 1.10 7.53 -51.93 -0.39 0.71 16 34 H 0.09 0.94 6.56 -51.93 -0.34 0.60 16 35 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 38 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 39 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 41 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 42 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 LS Contribution 353.96 15.07 5.33 5.33 Total: -1.00 -27.42 353.96 -8.08 -35.50 By element: Atomic # 1 Polarization: 10.82 SS G_CDS: -7.33 Total: 3.49 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -1.48 Total: -9.61 kcal Atomic # 7 Polarization: -52.29 SS G_CDS: 0.22 Total: -52.07 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.20 Total: 1.59 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -27.42 -8.08 -35.50 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567246097.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.855 kcal (2) G-P(sol) polarization free energy of solvation -27.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.497 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds