Wall clock time and date at job start Tue Mar 31 2020 05:54:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09000 * 109.47753 * 2 1 4 4 C 1.52996 * 109.47153 * 239.99723 * 2 1 3 5 5 C 1.50702 * 109.47159 * 175.00123 * 4 2 1 6 6 H 1.08002 * 120.00299 * 0.02562 * 5 4 2 7 7 C 1.37884 * 119.99942 * 179.72211 * 5 4 2 8 8 N 1.31514 * 119.99698 * 0.28408 * 7 5 4 9 9 Si 1.86794 * 119.99837 * 180.27476 * 7 5 4 10 10 H 1.48496 * 109.47341 * 0.02562 * 9 7 5 11 11 H 1.48508 * 109.46983 * 120.00379 * 9 7 5 12 12 H 1.48503 * 109.47491 * 240.00192 * 9 7 5 13 13 N 1.46908 * 109.47004 * 120.00132 * 2 1 3 14 14 C 1.46846 * 110.99972 * 59.20565 * 13 2 1 15 15 C 1.53035 * 109.51992 * 174.16109 * 14 13 2 16 16 C 1.53115 * 109.28075 * 59.18375 * 15 14 13 17 17 C 1.53120 * 109.15886 * 302.34356 * 16 15 14 18 18 H 1.09007 * 109.50005 * 297.71106 * 17 16 15 19 19 N 1.46505 * 109.53594 * 177.61626 * 17 16 15 20 20 C 1.47051 * 125.41072 * 120.17870 * 19 17 16 21 21 C 1.54104 * 103.86199 * 179.97438 * 20 19 17 22 22 N 1.47051 * 103.86009 * 359.97438 * 21 20 19 23 23 C 1.33944 * 125.40605 * 299.86960 * 19 17 16 24 24 O 1.21589 * 123.04413 * 0.02562 * 23 19 17 25 25 C 1.46848 * 110.99888 * 294.99434 * 13 2 1 26 26 H 1.08993 * 109.47136 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47101 * 300.00282 * 1 2 3 28 28 H 1.09000 * 109.46774 * 59.99989 * 1 2 3 29 29 H 1.09004 * 109.47066 * 55.00326 * 4 2 1 30 30 H 1.08994 * 109.47405 * 295.00156 * 4 2 1 31 31 H 0.97005 * 119.99651 * 179.97438 * 8 7 5 32 32 H 1.08996 * 109.46357 * 294.17820 * 14 13 2 33 33 H 1.09005 * 109.45990 * 54.14746 * 14 13 2 34 34 H 1.08999 * 109.50877 * 299.23678 * 15 14 13 35 35 H 1.09005 * 109.53223 * 179.14046 * 15 14 13 36 36 H 1.08997 * 109.52364 * 182.44092 * 16 15 14 37 37 H 1.08999 * 109.57533 * 62.27506 * 16 15 14 38 38 H 1.09002 * 110.54828 * 298.59128 * 20 19 17 39 39 H 1.08999 * 110.55314 * 61.40208 * 20 19 17 40 40 H 1.09002 * 110.54987 * 118.59072 * 21 20 19 41 41 H 1.08999 * 110.54737 * 241.26179 * 21 20 19 42 42 H 0.97006 * 125.40682 * 180.02562 * 22 21 20 43 43 H 1.08996 * 109.46576 * 305.85972 * 25 13 2 44 44 H 1.09009 * 109.46026 * 65.82711 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5419 -0.6150 -1.3126 6 1 4.0790 -0.0862 -0.5391 7 6 4.2309 -1.1981 -2.3550 8 7 3.5768 -1.8423 -3.2967 9 14 6.0931 -1.0729 -2.4295 10 1 6.5847 -0.3024 -1.2592 11 1 6.6822 -2.4360 -2.4070 12 1 6.4931 -0.3814 -3.6814 13 7 2.0196 -0.6926 1.1995 14 6 1.5333 -2.0775 1.2429 15 6 2.1775 -2.8089 2.4227 16 6 1.8221 -2.0825 3.7229 17 6 2.2964 -0.6294 3.6326 18 1 3.3810 -0.6067 3.5254 19 7 1.9100 0.0886 4.8497 20 6 2.8382 0.7423 5.7843 21 6 1.9156 1.3339 6.8677 22 7 0.5655 0.9512 6.4280 23 6 0.6547 0.2589 5.2848 24 8 -0.3158 -0.1779 4.6969 25 6 1.6489 0.0389 2.4177 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.6054 -0.2618 -2.1369 30 1 1.7516 -1.7715 -1.2055 31 1 4.0615 -2.2523 -4.0302 32 1 0.4500 -2.0784 1.3628 33 1 1.7963 -2.5840 0.3142 34 1 3.2601 -2.8205 2.2966 35 1 1.8050 -3.8325 2.4643 36 1 2.3144 -2.5748 4.5615 37 1 0.7423 -2.1047 3.8702 38 1 3.5205 0.0121 6.2194 39 1 3.3935 1.5339 5.2812 40 1 2.1395 0.8973 7.8410 41 1 2.0150 2.4188 6.9041 42 1 -0.2589 1.1687 6.8907 43 1 1.9956 1.0695 2.3422 44 1 0.5649 0.0280 2.5321 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567989379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:39 Heat of formation + Delta-G solvation = -11.954815 kcal Electronic energy + Delta-G solvation = -23533.760000 eV Core-core repulsion = 20293.293052 eV Total energy + Delta-G solvation = -3240.466947 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.14379 -38.71116 -36.30138 -35.29721 -33.13214 -32.27861 -30.05181 -29.40321 -28.30272 -27.20828 -24.05861 -23.46133 -23.13434 -22.47029 -21.00108 -19.25009 -18.49033 -17.67970 -16.58017 -16.13443 -16.00734 -15.20950 -14.62924 -14.49051 -14.24781 -14.04771 -13.85754 -13.77716 -13.63833 -13.03810 -12.78416 -12.53939 -12.30580 -12.08176 -11.88745 -11.71799 -11.33396 -11.24171 -11.03566 -10.66617 -10.54055 -10.43723 -10.20603 -10.00566 -9.84750 -9.79311 -9.35450 -9.10035 -8.91230 -8.53830 -8.22221 -7.36518 -5.85427 -3.82958 2.51390 3.16340 3.39626 3.47098 3.52128 3.75775 4.19486 4.58597 4.62402 4.69737 4.86210 5.09416 5.15798 5.21334 5.41222 5.45665 5.51028 5.52791 5.68213 5.74894 5.90040 5.94309 6.00893 6.09527 6.15717 6.25687 6.30055 6.30384 6.41861 6.58542 6.69683 6.74261 6.85335 6.87761 6.98262 7.06877 7.51440 7.61603 7.76133 7.99930 8.09230 8.17263 8.60746 8.62543 9.23374 9.78472 11.26631 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023479 B = 0.004564 C = 0.004276 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.294065 B = 6133.923370 C = 6546.439978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.090 3.910 3 H 0.068 0.932 4 C 0.028 3.972 5 C -0.488 4.488 6 H 0.061 0.939 7 C 0.050 3.950 8 N -0.904 5.904 9 Si 0.889 3.111 10 H -0.274 1.274 11 H -0.287 1.287 12 H -0.288 1.288 13 N -0.508 5.508 14 C 0.052 3.948 15 C -0.111 4.111 16 C -0.131 4.131 17 C 0.187 3.813 18 H 0.097 0.903 19 N -0.627 5.627 20 C 0.091 3.909 21 C 0.094 3.906 22 N -0.748 5.748 23 C 0.697 3.303 24 O -0.581 6.581 25 C 0.040 3.960 26 H 0.052 0.948 27 H 0.041 0.959 28 H 0.054 0.946 29 H 0.018 0.982 30 H 0.021 0.979 31 H 0.256 0.744 32 H 0.025 0.975 33 H 0.093 0.907 34 H 0.072 0.928 35 H 0.064 0.936 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.426 0.574 43 H 0.064 0.936 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.273 4.632 20.939 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.018 4.018 3 H 0.086 0.914 4 C -0.009 4.009 5 C -0.526 4.526 6 H 0.079 0.921 7 C -0.149 4.149 8 N -0.545 5.545 9 Si 0.717 3.283 10 H -0.198 1.198 11 H -0.214 1.214 12 H -0.215 1.215 13 N -0.232 5.232 14 C -0.076 4.076 15 C -0.149 4.149 16 C -0.169 4.169 17 C 0.085 3.915 18 H 0.115 0.885 19 N -0.366 5.366 20 C -0.033 4.033 21 C -0.031 4.031 22 N -0.411 5.411 23 C 0.397 3.603 24 O -0.458 6.458 25 C -0.089 4.089 26 H 0.071 0.929 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.037 0.963 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.043 0.957 33 H 0.111 0.889 34 H 0.091 0.909 35 H 0.082 0.918 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.267 0.733 43 H 0.083 0.917 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -2.135 4.216 20.304 20.847 hybrid contribution -0.059 0.289 0.288 0.412 sum -2.194 4.505 20.593 21.194 Atomic orbital electron populations 1.22513 0.99731 1.01397 1.00665 1.21880 0.90109 0.98262 0.91556 0.91398 1.19251 0.96371 0.95449 0.89851 1.21221 0.91770 1.32633 1.07014 0.92077 1.25009 0.97930 0.95946 0.96031 1.69980 1.35046 1.36984 1.12480 0.86588 0.86574 0.77497 0.77605 1.19824 1.21370 1.21478 1.62021 1.59254 1.01380 1.00516 1.22142 0.96019 0.90021 0.99410 1.21528 1.01937 0.98032 0.93418 1.21972 1.02539 0.94305 0.98112 1.20860 0.99714 0.90366 0.80542 0.88452 1.47403 1.05501 1.57867 1.25791 1.22386 0.93328 0.97638 0.89969 1.22298 0.82152 1.00662 0.98035 1.45157 1.08917 1.60350 1.26674 1.15968 0.84050 0.79160 0.81077 1.90953 1.38227 1.55976 1.60666 1.22384 0.99141 0.97356 0.90026 0.92912 0.93986 0.92689 0.96349 0.96055 0.93421 0.95653 0.88875 0.90899 0.91783 0.92547 0.90748 0.90088 0.89956 0.90284 0.90224 0.73310 0.91738 0.93342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.51 8.50 37.16 0.32 -3.20 16 2 C 0.09 1.91 2.30 -67.71 -0.16 1.76 16 3 H 0.07 1.47 8.08 -51.93 -0.42 1.05 16 4 C 0.03 0.71 4.27 -27.88 -0.12 0.59 16 5 C -0.49 -13.63 8.84 -34.44 -0.30 -13.94 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.30 16 7 C 0.05 1.43 5.46 -17.82 -0.10 1.34 16 8 N -0.90 -27.28 13.29 55.43 0.74 -26.54 16 9 Si 0.89 21.95 29.54 -169.99 -5.02 16.93 16 10 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 13 N -0.51 -9.99 4.36 -226.69 -0.99 -10.98 16 14 C 0.05 0.98 4.64 -3.84 -0.02 0.96 16 15 C -0.11 -1.75 6.09 -26.65 -0.16 -1.91 16 16 C -0.13 -1.94 5.33 -26.61 -0.14 -2.08 16 17 C 0.19 2.74 2.94 -67.85 -0.20 2.54 16 18 H 0.10 1.37 8.10 -51.92 -0.42 0.95 16 19 N -0.63 -7.91 2.85 -171.10 -0.49 -8.40 16 20 C 0.09 0.72 7.65 -3.16 -0.02 0.69 16 21 C 0.09 0.57 8.06 -3.16 -0.03 0.55 16 22 N -0.75 -7.19 6.37 -64.70 -0.41 -7.60 16 23 C 0.70 9.88 8.06 -88.40 -0.71 9.16 16 24 O -0.58 -10.74 14.97 5.29 0.08 -10.66 16 25 C 0.04 0.70 4.33 -3.84 -0.02 0.68 16 26 H 0.05 1.01 6.52 -51.93 -0.34 0.67 16 27 H 0.04 0.76 6.65 -51.93 -0.35 0.42 16 28 H 0.05 1.01 8.14 -51.93 -0.42 0.58 16 29 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.02 0.58 6.05 -51.93 -0.31 0.26 16 31 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 32 H 0.03 0.48 6.62 -51.93 -0.34 0.14 16 33 H 0.09 1.99 5.93 -51.93 -0.31 1.68 16 34 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 35 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 36 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.26 6.74 -51.93 -0.35 0.92 16 38 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 40 H 0.08 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 42 H 0.43 3.33 8.96 -40.82 -0.37 2.96 16 43 H 0.06 1.11 8.08 -51.93 -0.42 0.69 16 44 H 0.05 0.94 5.33 -51.92 -0.28 0.66 16 LS Contribution 335.56 15.07 5.06 5.06 Total: -1.00 -33.63 335.56 -9.94 -43.58 By element: Atomic # 1 Polarization: 8.70 SS G_CDS: -7.25 Total: 1.46 kcal Atomic # 6 Polarization: -1.19 SS G_CDS: -1.66 Total: -2.85 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: -1.15 Total: -53.52 kcal Atomic # 8 Polarization: -10.74 SS G_CDS: 0.08 Total: -10.66 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -5.02 Total: 16.93 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -33.63 -9.94 -43.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567989379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.624 kcal (2) G-P(sol) polarization free energy of solvation -33.634 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.579 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.955 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds