Wall clock time and date at job start Tue Mar 31 2020 05:54:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09005 * 109.46533 * 2 1 4 4 C 1.52997 * 109.47222 * 120.00283 * 2 1 3 5 5 C 1.50704 * 109.46789 * 183.87590 * 4 2 1 6 6 H 1.07996 * 120.00306 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99743 * 180.02562 * 5 4 2 8 8 N 1.31508 * 119.99901 * 179.97438 * 7 5 4 9 9 Si 1.86802 * 120.00189 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46935 * 90.00116 * 9 7 5 11 11 H 1.48499 * 109.47188 * 210.00661 * 9 7 5 12 12 H 1.48501 * 109.46924 * 330.00545 * 9 7 5 13 13 N 1.46898 * 109.47124 * 240.00278 * 2 1 3 14 14 C 1.46848 * 111.00224 * 306.73373 * 13 2 1 15 15 C 1.53037 * 109.52154 * 185.83949 * 14 13 2 16 16 C 1.53121 * 109.27769 * 300.81401 * 15 14 13 17 17 C 1.53115 * 109.15934 * 57.65860 * 16 15 14 18 18 H 1.08996 * 109.50602 * 62.28346 * 17 16 15 19 19 N 1.46497 * 109.53296 * 182.38654 * 17 16 15 20 20 C 1.47061 * 125.40501 * 239.54148 * 19 17 16 21 21 C 1.54109 * 103.85965 * 179.86978 * 20 19 17 22 22 N 1.47054 * 103.86012 * 0.37407 * 21 20 19 23 23 C 1.33942 * 125.41721 * 59.84481 * 19 17 16 24 24 O 1.21595 * 123.03864 * 0.02594 * 23 19 17 25 25 C 1.46855 * 110.99921 * 70.93681 * 13 2 1 26 26 H 1.09006 * 109.47058 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47085 * 299.99377 * 1 2 3 28 28 H 1.08996 * 109.47371 * 59.99627 * 1 2 3 29 29 H 1.08997 * 109.47001 * 303.86991 * 4 2 1 30 30 H 1.08995 * 109.47122 * 63.87377 * 4 2 1 31 31 H 0.97000 * 120.00145 * 179.97438 * 8 7 5 32 32 H 1.09005 * 109.45706 * 305.85223 * 14 13 2 33 33 H 1.08993 * 109.46332 * 65.81748 * 14 13 2 34 34 H 1.08999 * 109.49764 * 180.87469 * 15 14 13 35 35 H 1.08999 * 109.53435 * 60.77871 * 15 14 13 36 36 H 1.09003 * 109.52132 * 297.75007 * 16 15 14 37 37 H 1.08997 * 109.56974 * 177.59439 * 16 15 14 38 38 H 1.08995 * 110.54785 * 298.58886 * 20 19 17 39 39 H 1.08998 * 110.54745 * 61.40749 * 20 19 17 40 40 H 1.09000 * 110.75909 * 241.68159 * 21 20 19 41 41 H 1.08996 * 110.46428 * 118.92914 * 21 20 19 42 42 H 0.97006 * 125.41183 * 179.75517 * 22 21 20 43 43 H 1.08999 * 109.46398 * 294.18123 * 25 13 2 44 44 H 1.09007 * 109.46240 * 54.14432 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0278 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5440 -0.6386 1.2980 6 1 4.0822 -0.1235 0.5162 7 6 4.2329 -1.2215 2.3405 8 7 5.5454 -1.1498 2.3829 9 14 3.3021 -2.1130 3.6926 10 1 3.1441 -3.5430 3.3248 11 1 4.0594 -2.0100 4.9658 12 1 1.9626 -1.4947 3.8620 13 7 2.0197 -0.6924 -1.1995 14 6 1.4221 -2.0287 -1.3166 15 6 2.0614 -2.7737 -2.4906 16 6 1.8336 -1.9777 -3.7787 17 6 2.4226 -0.5741 -3.6128 18 1 3.4984 -0.6473 -3.4537 19 7 2.1592 0.2134 -4.8197 20 6 3.1845 0.8205 -5.6816 21 6 2.3703 1.5179 -6.7888 22 7 0.9726 1.2374 -6.4279 23 6 0.9461 0.4998 -5.3102 24 8 -0.0857 0.1245 -4.7878 25 6 1.7729 0.1071 -2.4063 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8901 28 1 -0.3634 0.5139 -0.8899 29 1 1.6212 -0.2491 2.1378 30 1 1.7345 -1.7670 1.2151 31 1 6.0300 -1.5595 3.1165 32 1 1.5948 -2.5857 -0.3957 33 1 0.3498 -1.9333 -1.4875 34 1 1.6066 -3.7596 -2.5869 35 1 3.1315 -2.8821 -2.3142 36 1 0.7643 -1.9030 -3.9765 37 1 2.3237 -2.4824 -4.6112 38 1 3.7735 1.5470 -5.1220 39 1 3.8285 0.0522 -6.1094 40 1 2.6054 1.0952 -7.7656 41 1 2.5592 2.5913 -6.7820 42 1 0.1934 1.5387 -6.9210 43 1 0.6990 0.1925 -2.5721 44 1 2.2004 1.1015 -2.2769 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567989380.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:42 Heat of formation + Delta-G solvation = -8.443047 kcal Electronic energy + Delta-G solvation = -23548.502767 eV Core-core repulsion = 20308.188102 eV Total energy + Delta-G solvation = -3240.314666 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.13828 -38.77647 -36.29380 -35.36745 -33.15112 -32.23401 -30.22029 -29.52753 -28.31838 -27.68007 -24.16349 -23.38373 -23.11654 -22.28796 -20.95836 -19.23063 -18.56771 -17.68045 -16.57183 -16.51151 -16.06116 -15.27476 -14.65329 -14.49970 -14.16405 -14.03475 -13.91917 -13.80723 -13.62639 -13.01922 -12.79228 -12.53303 -12.39889 -12.22073 -12.09392 -11.88159 -11.50409 -11.38223 -11.26455 -10.74176 -10.55243 -10.35731 -10.14374 -9.92844 -9.84466 -9.66470 -9.47159 -9.34516 -8.98662 -8.53513 -8.38627 -7.42019 -5.87803 -3.81161 2.52191 3.16601 3.38436 3.46103 3.49281 3.76528 4.21870 4.57318 4.60083 4.68025 4.86007 5.09642 5.14626 5.24058 5.38034 5.45757 5.46985 5.52638 5.64240 5.71216 5.78139 5.89213 5.92952 5.97279 6.06085 6.19259 6.22162 6.28149 6.38375 6.47654 6.58464 6.63568 6.72684 6.81859 6.88873 6.98565 7.20207 7.38869 7.52476 7.86593 7.89374 8.01801 8.60967 8.76316 9.25060 9.75834 11.26271 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.026899 B = 0.004463 C = 0.004291 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.699947 B = 6272.461613 C = 6523.644191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.099 3.901 3 H 0.073 0.927 4 C -0.007 4.007 5 C -0.487 4.487 6 H 0.079 0.921 7 C 0.062 3.938 8 N -0.909 5.909 9 Si 0.871 3.129 10 H -0.280 1.280 11 H -0.291 1.291 12 H -0.268 1.268 13 N -0.505 5.505 14 C 0.053 3.947 15 C -0.112 4.112 16 C -0.130 4.130 17 C 0.187 3.813 18 H 0.100 0.900 19 N -0.627 5.627 20 C 0.091 3.909 21 C 0.094 3.906 22 N -0.748 5.748 23 C 0.697 3.303 24 O -0.583 6.583 25 C 0.043 3.957 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.045 0.955 29 H 0.018 0.982 30 H 0.013 0.987 31 H 0.259 0.741 32 H 0.084 0.916 33 H 0.027 0.973 34 H 0.063 0.937 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.057 0.943 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.426 0.574 43 H 0.047 0.953 44 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.134 3.367 -18.904 20.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.009 4.009 3 H 0.091 0.909 4 C -0.044 4.044 5 C -0.526 4.526 6 H 0.097 0.903 7 C -0.138 4.138 8 N -0.550 5.550 9 Si 0.699 3.301 10 H -0.206 1.206 11 H -0.217 1.217 12 H -0.193 1.193 13 N -0.229 5.229 14 C -0.075 4.075 15 C -0.150 4.150 16 C -0.169 4.169 17 C 0.085 3.915 18 H 0.118 0.882 19 N -0.365 5.365 20 C -0.033 4.033 21 C -0.032 4.032 22 N -0.411 5.411 23 C 0.398 3.602 24 O -0.460 6.460 25 C -0.087 4.087 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.064 0.936 29 H 0.036 0.964 30 H 0.031 0.969 31 H 0.069 0.931 32 H 0.102 0.898 33 H 0.045 0.955 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.092 0.908 37 H 0.076 0.924 38 H 0.102 0.898 39 H 0.100 0.900 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.267 0.733 43 H 0.065 0.935 44 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.928 2.969 -18.323 19.485 hybrid contribution -1.408 -0.165 0.333 1.457 sum -7.337 2.803 -17.989 19.629 Atomic orbital electron populations 1.22556 0.99590 1.01481 1.00975 1.21651 0.89992 0.98291 0.90941 0.90857 1.19694 0.97996 0.95038 0.91680 1.21052 0.89217 1.34045 1.08236 0.90303 1.24994 0.94638 0.96339 0.97784 1.69907 1.06283 1.46324 1.32471 0.86922 0.80444 0.80556 0.82157 1.20573 1.21697 1.19312 1.61972 1.58339 1.01783 1.00808 1.22112 0.95382 0.90967 0.99007 1.21530 1.02376 0.97619 0.93487 1.21963 1.02308 0.94546 0.98078 1.20852 1.00802 0.89147 0.80702 0.88197 1.47390 1.05291 1.55973 1.27837 1.22398 0.92084 0.97775 0.91082 1.22310 0.81470 1.00956 0.98417 1.45157 1.08450 1.58401 1.29080 1.15964 0.84383 0.79083 0.80795 1.90945 1.32092 1.59384 1.63621 1.22373 0.99457 0.96876 0.89964 0.92801 0.92645 0.93632 0.96424 0.96899 0.93142 0.89773 0.95460 0.91795 0.90624 0.90762 0.92425 0.89808 0.90043 0.90261 0.90209 0.73328 0.93508 0.91482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.34 8.44 37.16 0.31 -3.03 16 2 C 0.10 2.04 2.26 -67.71 -0.15 1.88 16 3 H 0.07 1.55 7.97 -51.93 -0.41 1.14 16 4 C -0.01 -0.16 3.44 -27.88 -0.10 -0.25 16 5 C -0.49 -13.77 9.36 -34.44 -0.32 -14.09 16 6 H 0.08 2.43 7.99 -52.49 -0.42 2.01 16 7 C 0.06 1.80 5.47 -17.82 -0.10 1.71 16 8 N -0.91 -28.24 13.96 55.43 0.77 -27.46 16 9 Si 0.87 21.98 27.47 -169.99 -4.67 17.31 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 12 H -0.27 -6.53 6.54 56.52 0.37 -6.16 16 13 N -0.51 -9.80 4.28 -226.68 -0.97 -10.77 16 14 C 0.05 0.96 4.52 -3.83 -0.02 0.94 16 15 C -0.11 -1.73 6.09 -26.65 -0.16 -1.89 16 16 C -0.13 -1.91 5.33 -26.61 -0.14 -2.05 16 17 C 0.19 2.76 2.94 -67.85 -0.20 2.56 16 18 H 0.10 1.46 8.10 -51.93 -0.42 1.04 16 19 N -0.63 -7.98 2.85 -171.11 -0.49 -8.46 16 20 C 0.09 0.74 7.65 -3.16 -0.02 0.72 16 21 C 0.09 0.59 8.06 -3.16 -0.03 0.56 16 22 N -0.75 -7.21 6.37 -64.70 -0.41 -7.63 16 23 C 0.70 9.86 8.06 -88.41 -0.71 9.14 16 24 O -0.58 -10.66 14.98 5.28 0.08 -10.58 16 25 C 0.04 0.73 4.45 -3.83 -0.02 0.72 16 26 H 0.05 0.94 6.45 -51.93 -0.34 0.61 16 27 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 28 H 0.04 0.79 6.85 -51.93 -0.36 0.43 16 29 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 30 H 0.01 0.31 5.73 -51.93 -0.30 0.01 16 31 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 32 H 0.08 1.65 6.18 -51.93 -0.32 1.33 16 33 H 0.03 0.49 6.57 -51.93 -0.34 0.14 16 34 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 35 H 0.08 1.23 8.14 -51.93 -0.42 0.81 16 36 H 0.07 1.24 6.72 -51.93 -0.35 0.89 16 37 H 0.06 0.76 8.14 -51.93 -0.42 0.33 16 38 H 0.08 0.63 8.14 -51.93 -0.42 0.20 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.43 3.33 8.96 -40.82 -0.37 2.96 16 43 H 0.05 0.88 5.53 -51.93 -0.29 0.60 16 44 H 0.07 1.17 8.01 -51.92 -0.42 0.75 16 LS Contribution 332.44 15.07 5.01 5.01 Total: -1.00 -34.23 332.44 -9.58 -43.80 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: -7.24 Total: 1.85 kcal Atomic # 6 Polarization: -1.42 SS G_CDS: -1.66 Total: -3.08 kcal Atomic # 7 Polarization: -53.23 SS G_CDS: -1.10 Total: -54.32 kcal Atomic # 8 Polarization: -10.66 SS G_CDS: 0.08 Total: -10.58 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.67 Total: 17.31 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -34.23 -9.58 -43.80 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567989380.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.361 kcal (2) G-P(sol) polarization free energy of solvation -34.227 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds