Wall clock time and date at job start Tue Mar 31 2020 05:54:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47300 * 2 1 4 4 C 1.53009 * 109.47012 * 119.99423 * 2 1 3 5 5 C 1.50700 * 109.46973 * 183.57353 * 4 2 1 6 6 H 1.07999 * 120.00207 * 5.09093 * 5 4 2 7 7 C 1.37875 * 119.99657 * 185.08720 * 5 4 2 8 8 N 1.31517 * 120.00109 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99942 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47130 * 90.00265 * 9 7 5 11 11 H 1.48502 * 109.46985 * 209.99958 * 9 7 5 12 12 H 1.48495 * 109.47080 * 329.99713 * 9 7 5 13 13 N 1.46900 * 109.47601 * 239.99424 * 2 1 3 14 14 C 1.46849 * 110.99391 * 72.95620 * 13 2 1 15 15 C 1.53039 * 109.51990 * 174.16089 * 14 13 2 16 16 C 1.53119 * 109.30961 * 59.16069 * 15 14 13 17 17 C 1.53127 * 109.16073 * 302.40298 * 16 15 14 18 18 H 1.08996 * 109.50253 * 297.63636 * 17 16 15 19 19 N 1.46498 * 109.50443 * 177.55648 * 17 16 15 20 20 C 1.47052 * 125.41165 * 120.29657 * 19 17 16 21 21 C 1.54098 * 103.86227 * 180.23020 * 20 19 17 22 22 N 1.47047 * 103.86254 * 359.76315 * 21 20 19 23 23 C 1.33945 * 109.18338 * 0.02562 * 22 21 20 24 24 O 1.21590 * 123.04433 * 179.97438 * 23 22 21 25 25 C 1.46836 * 110.99896 * 308.75048 * 13 2 1 26 26 H 1.09006 * 109.46586 * 60.00353 * 1 2 3 27 27 H 1.09000 * 109.47026 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47599 * 300.00666 * 1 2 3 29 29 H 1.08996 * 109.46808 * 303.57728 * 4 2 1 30 30 H 1.09001 * 109.46507 * 63.57587 * 4 2 1 31 31 H 0.97005 * 120.00081 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.46685 * 294.17482 * 14 13 2 33 33 H 1.09001 * 109.46428 * 54.16320 * 14 13 2 34 34 H 1.09005 * 109.50490 * 179.12242 * 15 14 13 35 35 H 1.09000 * 109.50417 * 299.19920 * 15 14 13 36 36 H 1.08999 * 109.55912 * 182.48026 * 16 15 14 37 37 H 1.09000 * 109.49157 * 62.28867 * 16 15 14 38 38 H 1.08993 * 110.74628 * 61.53044 * 20 19 17 39 39 H 1.09006 * 110.34856 * 298.72886 * 20 19 17 40 40 H 1.08999 * 110.54551 * 241.16872 * 21 20 19 41 41 H 1.08993 * 110.67408 * 118.42138 * 21 20 19 42 42 H 0.97008 * 125.40922 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.46663 * 65.82317 * 25 13 2 44 44 H 1.08994 * 109.45561 * 305.84457 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5443 -0.6449 1.2945 6 1 4.0780 -0.0644 0.5565 7 6 4.2394 -1.3163 2.2778 8 7 3.5896 -2.0237 3.1762 9 14 6.1042 -1.2213 2.3342 10 1 6.5159 -0.0697 3.1765 11 1 6.6465 -2.4768 2.9130 12 1 6.6325 -1.0420 0.9580 13 7 2.0197 -0.6926 -1.1993 14 6 1.8163 0.1275 -2.4004 15 6 2.4665 -0.5585 -3.6041 16 6 1.8412 -1.9429 -3.7966 17 6 2.0235 -2.7594 -2.5141 18 1 3.0868 -2.9007 -2.3207 19 7 1.3769 -4.0648 -2.6693 20 6 2.0529 -5.3672 -2.5745 21 6 0.9246 -6.3877 -2.8197 22 7 -0.2686 -5.5520 -3.0208 23 6 0.0753 -4.2616 -2.9169 24 8 -0.7211 -3.3512 -3.0411 25 6 1.3862 -2.0096 -1.3420 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6252 -0.2456 2.1381 30 1 1.7298 -1.7657 1.2179 31 1 4.0786 -2.4964 3.8679 32 1 0.7482 0.2456 -2.5829 33 1 2.2701 1.1074 -2.2523 34 1 2.3019 0.0427 -4.4983 35 1 3.5370 -0.6639 -3.4284 36 1 2.3318 -2.4527 -4.6258 37 1 0.7781 -1.8351 -4.0118 38 1 2.4861 -5.5062 -1.5840 39 1 2.8202 -5.4530 -3.3440 40 1 0.7974 -7.0334 -1.9508 41 1 1.1299 -6.9820 -3.7099 42 1 -1.1627 -5.8828 -3.2002 43 1 0.3202 -1.8814 -1.5295 44 1 1.5275 -2.5816 -0.4251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567989381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:44 Heat of formation + Delta-G solvation = -12.901633 kcal Electronic energy + Delta-G solvation = -23804.987570 eV Core-core repulsion = 20564.479566 eV Total energy + Delta-G solvation = -3240.508004 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.00798 -38.67700 -36.15986 -35.18095 -33.27974 -32.22733 -29.72584 -29.46429 -28.31166 -27.19878 -24.04342 -23.35979 -22.97770 -22.75026 -20.51647 -19.36166 -18.54679 -17.58994 -16.43390 -16.11653 -16.07577 -14.93343 -14.57165 -14.44409 -14.30991 -14.02106 -13.84126 -13.65957 -13.33293 -13.08860 -12.75967 -12.44547 -12.22608 -12.02895 -11.93491 -11.71713 -11.36537 -11.14576 -11.01582 -10.67026 -10.51695 -10.47743 -10.23108 -10.07910 -9.89186 -9.71134 -9.23357 -9.09332 -8.91479 -8.39479 -8.22775 -7.34478 -5.85242 -3.82489 2.66039 3.30111 3.39591 3.45744 3.50607 3.89838 4.36229 4.58191 4.69074 4.80561 4.99387 5.18214 5.24399 5.31808 5.39929 5.51126 5.52102 5.66322 5.74561 5.83092 5.90093 5.92796 5.97837 6.08282 6.12697 6.19843 6.28516 6.33876 6.46353 6.52254 6.67671 6.70765 6.82787 6.95520 7.08128 7.12084 7.60479 7.65904 7.75817 7.98647 8.11049 8.16772 8.62790 8.74139 9.22945 9.78276 11.26755 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.005890 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.145877 B = 4752.360157 C = 5399.679538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.089 3.911 3 H 0.069 0.931 4 C 0.030 3.970 5 C -0.484 4.484 6 H 0.059 0.941 7 C 0.050 3.950 8 N -0.905 5.905 9 Si 0.888 3.112 10 H -0.284 1.284 11 H -0.291 1.291 12 H -0.274 1.274 13 N -0.507 5.507 14 C 0.050 3.950 15 C -0.110 4.110 16 C -0.131 4.131 17 C 0.187 3.813 18 H 0.099 0.901 19 N -0.625 5.625 20 C 0.090 3.910 21 C 0.094 3.906 22 N -0.748 5.748 23 C 0.698 3.302 24 O -0.584 6.584 25 C 0.046 3.954 26 H 0.040 0.960 27 H 0.053 0.947 28 H 0.054 0.946 29 H 0.014 0.986 30 H 0.021 0.979 31 H 0.256 0.744 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.071 0.929 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.425 0.575 43 H 0.047 0.953 44 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.881 -7.271 -14.289 16.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.019 4.019 3 H 0.087 0.913 4 C -0.007 4.007 5 C -0.523 4.523 6 H 0.078 0.922 7 C -0.149 4.149 8 N -0.546 5.546 9 Si 0.717 3.283 10 H -0.211 1.211 11 H -0.217 1.217 12 H -0.199 1.199 13 N -0.231 5.231 14 C -0.078 4.078 15 C -0.148 4.148 16 C -0.170 4.170 17 C 0.084 3.916 18 H 0.117 0.883 19 N -0.363 5.363 20 C -0.034 4.034 21 C -0.031 4.031 22 N -0.410 5.410 23 C 0.399 3.601 24 O -0.462 6.462 25 C -0.083 4.083 26 H 0.059 0.941 27 H 0.072 0.928 28 H 0.073 0.927 29 H 0.033 0.967 30 H 0.039 0.961 31 H 0.066 0.934 32 H 0.044 0.956 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.090 0.910 36 H 0.075 0.925 37 H 0.093 0.907 38 H 0.104 0.896 39 H 0.098 0.902 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.266 0.734 43 H 0.065 0.935 44 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -3.625 -6.831 -14.121 16.099 hybrid contribution -0.121 -0.321 0.032 0.344 sum -3.745 -7.151 -14.089 16.238 Atomic orbital electron populations 1.22507 0.99637 1.01502 1.00518 1.21890 0.90143 0.98063 0.91770 0.91296 1.19192 0.96296 0.95496 0.89718 1.21152 0.91563 1.28631 1.10948 0.92233 1.24997 0.97880 0.95975 0.96075 1.69976 1.35041 1.33069 1.16516 0.86659 0.86607 0.77053 0.78026 1.21063 1.21669 1.19922 1.61990 1.57669 1.01825 1.01593 1.22108 0.97881 0.96955 0.90872 1.21506 1.00872 0.95097 0.97342 1.21965 1.02372 0.95896 0.96721 1.20865 0.96793 0.78750 0.95169 0.88344 1.47332 1.07549 1.06439 1.74938 1.22401 0.95568 0.82065 1.03346 1.22302 0.84656 0.94040 1.02114 1.45136 1.11343 1.05992 1.78573 1.15951 0.83065 0.83328 0.77792 1.90928 1.53099 1.43707 1.58502 1.22364 0.96766 0.91338 0.97824 0.94140 0.92793 0.92722 0.96747 0.96074 0.93434 0.95558 0.91179 0.91920 0.91023 0.92512 0.90703 0.89576 0.90214 0.90155 0.90374 0.73389 0.93494 0.89862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.50 8.40 37.15 0.31 -3.19 16 2 C 0.09 1.90 2.26 -67.71 -0.15 1.75 16 3 H 0.07 1.46 7.93 -51.92 -0.41 1.05 16 4 C 0.03 0.78 4.40 -27.88 -0.12 0.66 16 5 C -0.48 -13.54 8.80 -34.44 -0.30 -13.84 16 6 H 0.06 1.66 7.75 -52.49 -0.41 1.25 16 7 C 0.05 1.42 5.46 -17.82 -0.10 1.32 16 8 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 9 Si 0.89 21.85 29.54 -169.99 -5.02 16.83 16 10 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 12 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 13 N -0.51 -10.02 4.26 -226.69 -0.97 -10.98 16 14 C 0.05 0.84 5.18 -3.83 -0.02 0.82 16 15 C -0.11 -1.57 6.09 -26.65 -0.16 -1.74 16 16 C -0.13 -1.95 5.33 -26.60 -0.14 -2.09 16 17 C 0.19 3.02 2.94 -67.84 -0.20 2.82 16 18 H 0.10 1.59 8.10 -51.93 -0.42 1.17 16 19 N -0.62 -9.05 2.85 -171.10 -0.49 -9.54 16 20 C 0.09 0.92 7.65 -3.17 -0.02 0.89 16 21 C 0.09 0.75 8.06 -3.17 -0.03 0.73 16 22 N -0.75 -8.36 6.37 -64.71 -0.41 -8.77 16 23 C 0.70 10.96 8.06 -88.40 -0.71 10.25 16 24 O -0.58 -11.44 14.97 5.29 0.08 -11.36 16 25 C 0.05 0.89 3.78 -3.84 -0.01 0.87 16 26 H 0.04 0.71 6.93 -51.93 -0.36 0.35 16 27 H 0.05 1.08 6.45 -51.93 -0.33 0.75 16 28 H 0.05 1.00 8.14 -51.93 -0.42 0.57 16 29 H 0.01 0.40 8.14 -51.93 -0.42 -0.03 16 30 H 0.02 0.59 6.39 -51.93 -0.33 0.25 16 31 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 32 H 0.03 0.45 6.98 -51.93 -0.36 0.09 16 33 H 0.07 1.12 7.98 -51.93 -0.41 0.71 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 35 H 0.07 1.04 8.14 -51.93 -0.42 0.61 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.07 1.27 6.72 -51.93 -0.35 0.92 16 38 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 39 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 41 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.43 3.91 8.96 -40.82 -0.37 3.54 16 43 H 0.05 0.98 5.19 -51.93 -0.27 0.71 16 44 H 0.08 1.85 6.28 -51.93 -0.33 1.52 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -33.53 336.25 -9.96 -43.49 By element: Atomic # 1 Polarization: 9.80 SS G_CDS: -7.29 Total: 2.50 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.66 Total: -0.75 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -1.13 Total: -55.79 kcal Atomic # 8 Polarization: -11.44 SS G_CDS: 0.08 Total: -11.36 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -33.53 -9.96 -43.49 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567989381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.590 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.492 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.902 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds