Wall clock time and date at job start Tue Mar 31 2020 05:54:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09008 * 109.47300 * 2 1 4 4 C 1.53009 * 109.47012 * 119.99423 * 2 1 3 5 5 C 1.50700 * 109.46973 * 183.57353 * 4 2 1 6 6 H 1.07999 * 120.00207 * 5.09093 * 5 4 2 7 7 C 1.37875 * 119.99657 * 185.08720 * 5 4 2 8 8 N 1.31517 * 120.00109 * 0.02562 * 7 5 4 9 9 Si 1.86805 * 119.99942 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47130 * 90.00265 * 9 7 5 11 11 H 1.48502 * 109.46985 * 209.99958 * 9 7 5 12 12 H 1.48495 * 109.47080 * 329.99713 * 9 7 5 13 13 N 1.46900 * 109.47601 * 239.99424 * 2 1 3 14 14 C 1.46849 * 110.99391 * 72.95620 * 13 2 1 15 15 C 1.53039 * 109.51990 * 174.16089 * 14 13 2 16 16 C 1.53119 * 109.30961 * 59.16069 * 15 14 13 17 17 C 1.53127 * 109.16073 * 302.40298 * 16 15 14 18 18 H 1.08996 * 109.50253 * 297.63636 * 17 16 15 19 19 N 1.46498 * 109.50443 * 177.55648 * 17 16 15 20 20 C 1.47052 * 125.41165 * 120.29657 * 19 17 16 21 21 C 1.54098 * 103.86227 * 180.23020 * 20 19 17 22 22 N 1.47047 * 103.86254 * 359.76315 * 21 20 19 23 23 C 1.33945 * 109.18338 * 0.02562 * 22 21 20 24 24 O 1.21590 * 123.04433 * 179.97438 * 23 22 21 25 25 C 1.46836 * 110.99896 * 308.75048 * 13 2 1 26 26 H 1.09006 * 109.46586 * 60.00353 * 1 2 3 27 27 H 1.09000 * 109.47026 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47599 * 300.00666 * 1 2 3 29 29 H 1.08996 * 109.46808 * 303.57728 * 4 2 1 30 30 H 1.09001 * 109.46507 * 63.57587 * 4 2 1 31 31 H 0.97005 * 120.00081 * 179.97438 * 8 7 5 32 32 H 1.08999 * 109.46685 * 294.17482 * 14 13 2 33 33 H 1.09001 * 109.46428 * 54.16320 * 14 13 2 34 34 H 1.09005 * 109.50490 * 179.12242 * 15 14 13 35 35 H 1.09000 * 109.50417 * 299.19920 * 15 14 13 36 36 H 1.08999 * 109.55912 * 182.48026 * 16 15 14 37 37 H 1.09000 * 109.49157 * 62.28867 * 16 15 14 38 38 H 1.08993 * 110.74628 * 61.53044 * 20 19 17 39 39 H 1.09006 * 110.34856 * 298.72886 * 20 19 17 40 40 H 1.08999 * 110.54551 * 241.16872 * 21 20 19 41 41 H 1.08993 * 110.67408 * 118.42138 * 21 20 19 42 42 H 0.97008 * 125.40922 * 180.02562 * 22 21 20 43 43 H 1.08998 * 109.46663 * 65.82317 * 25 13 2 44 44 H 1.08994 * 109.45561 * 305.84457 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 1.2494 5 6 3.5443 -0.6449 1.2945 6 1 4.0780 -0.0644 0.5565 7 6 4.2394 -1.3163 2.2778 8 7 3.5896 -2.0237 3.1762 9 14 6.1042 -1.2213 2.3342 10 1 6.5159 -0.0697 3.1765 11 1 6.6465 -2.4768 2.9130 12 1 6.6325 -1.0420 0.9580 13 7 2.0197 -0.6926 -1.1993 14 6 1.8163 0.1275 -2.4004 15 6 2.4665 -0.5585 -3.6041 16 6 1.8412 -1.9429 -3.7966 17 6 2.0235 -2.7594 -2.5141 18 1 3.0868 -2.9007 -2.3207 19 7 1.3769 -4.0648 -2.6693 20 6 2.0529 -5.3672 -2.5745 21 6 0.9246 -6.3877 -2.8197 22 7 -0.2686 -5.5520 -3.0208 23 6 0.0753 -4.2616 -2.9169 24 8 -0.7211 -3.3512 -3.0411 25 6 1.3862 -2.0096 -1.3420 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3634 0.5139 0.8899 29 1 1.6252 -0.2456 2.1381 30 1 1.7298 -1.7657 1.2179 31 1 4.0786 -2.4964 3.8679 32 1 0.7482 0.2456 -2.5829 33 1 2.2701 1.1074 -2.2523 34 1 2.3019 0.0427 -4.4983 35 1 3.5370 -0.6639 -3.4284 36 1 2.3318 -2.4527 -4.6258 37 1 0.7781 -1.8351 -4.0118 38 1 2.4861 -5.5062 -1.5840 39 1 2.8202 -5.4530 -3.3440 40 1 0.7974 -7.0334 -1.9508 41 1 1.1299 -6.9820 -3.7099 42 1 -1.1627 -5.8828 -3.2002 43 1 0.3202 -1.8814 -1.5295 44 1 1.5275 -2.5816 -0.4251 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000567989381.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:43 Heat of formation + Delta-G solvation = -37.154318 kcal Electronic energy + Delta-G solvation = -23806.039245 eV Core-core repulsion = 20564.479566 eV Total energy + Delta-G solvation = -3241.559680 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.10427 -40.12599 -37.33982 -36.65288 -34.84771 -33.95807 -31.12441 -30.88381 -29.35949 -29.10616 -25.68070 -24.79769 -24.47932 -23.82179 -21.80904 -20.78708 -20.03119 -18.65183 -18.32779 -17.47592 -17.29363 -16.49919 -16.14382 -15.82436 -15.70115 -15.27514 -15.12019 -14.92873 -14.64582 -14.48169 -14.29165 -13.73381 -13.65404 -13.52721 -13.21109 -13.08145 -12.93164 -12.85237 -12.56633 -12.41064 -12.31902 -11.99745 -11.77841 -11.61257 -11.44952 -11.12482 -10.97012 -10.93685 -10.45536 -10.27480 -9.43736 -8.93642 -8.06116 -6.11400 1.45133 1.45935 1.57799 1.61588 2.13401 2.50689 2.95350 3.22020 3.33169 3.61303 3.79313 3.87706 4.06552 4.13014 4.19448 4.30736 4.37904 4.40319 4.47721 4.50619 4.62057 4.66115 4.77274 4.80733 4.83689 4.89481 4.97828 5.04508 5.06066 5.13829 5.18312 5.20176 5.26196 5.47796 5.49188 5.68943 5.77383 5.91492 6.22062 6.30755 6.43592 6.51930 6.61117 7.01351 7.54018 7.61751 9.06304 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.015431 B = 0.005890 C = 0.005184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1814.145877 B = 4752.360157 C = 5399.679538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.095 3.905 3 H 0.073 0.927 4 C 0.039 3.961 5 C -0.493 4.493 6 H 0.061 0.939 7 C -0.006 4.006 8 N -0.943 5.943 9 Si 0.959 3.041 10 H -0.278 1.278 11 H -0.287 1.287 12 H -0.262 1.262 13 N -0.519 5.519 14 C 0.049 3.951 15 C -0.103 4.103 16 C -0.120 4.120 17 C 0.190 3.810 18 H 0.100 0.900 19 N -0.631 5.631 20 C 0.081 3.919 21 C 0.098 3.902 22 N -0.738 5.738 23 C 0.686 3.314 24 O -0.633 6.633 25 C 0.061 3.939 26 H 0.058 0.942 27 H 0.036 0.964 28 H 0.060 0.940 29 H -0.012 1.012 30 H -0.009 1.009 31 H 0.258 0.742 32 H 0.022 0.978 33 H 0.080 0.920 34 H 0.091 0.909 35 H 0.075 0.925 36 H 0.080 0.920 37 H 0.052 0.948 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.097 0.903 41 H 0.115 0.885 42 H 0.434 0.566 43 H 0.028 0.972 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.211 -7.851 -16.416 18.331 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.013 4.013 3 H 0.092 0.908 4 C 0.001 3.999 5 C -0.532 4.532 6 H 0.080 0.920 7 C -0.201 4.201 8 N -0.585 5.585 9 Si 0.785 3.215 10 H -0.204 1.204 11 H -0.213 1.213 12 H -0.187 1.187 13 N -0.243 5.243 14 C -0.079 4.079 15 C -0.141 4.141 16 C -0.158 4.158 17 C 0.086 3.914 18 H 0.118 0.882 19 N -0.369 5.369 20 C -0.042 4.042 21 C -0.026 4.026 22 N -0.400 5.400 23 C 0.386 3.614 24 O -0.515 6.515 25 C -0.068 4.068 26 H 0.077 0.923 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.006 0.994 30 H 0.009 0.991 31 H 0.066 0.934 32 H 0.040 0.960 33 H 0.098 0.902 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.099 0.901 37 H 0.071 0.929 38 H 0.098 0.902 39 H 0.125 0.875 40 H 0.115 0.885 41 H 0.133 0.867 42 H 0.277 0.723 43 H 0.046 0.954 44 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -1.945 -7.460 -16.266 18.000 hybrid contribution -0.680 -0.180 0.739 1.021 sum -2.625 -7.640 -15.527 17.502 Atomic orbital electron populations 1.22356 0.98169 1.00734 1.01675 1.21643 0.91282 0.97518 0.90847 0.90848 1.19021 0.95774 0.93976 0.91095 1.21419 0.92471 1.28403 1.10861 0.92048 1.25876 1.03084 0.95538 0.95628 1.70124 1.37109 1.34006 1.17271 0.85531 0.80312 0.77126 0.78537 1.20428 1.21318 1.18656 1.61942 1.57723 1.02324 1.02279 1.22225 0.98097 0.97211 0.90358 1.21508 1.00587 0.94874 0.97161 1.21863 1.01261 0.96258 0.96444 1.20732 0.96375 0.79737 0.94532 0.88206 1.47362 1.07721 1.07314 1.74481 1.22737 0.96864 0.80455 1.04094 1.22575 0.82180 0.93212 1.04606 1.45120 1.12832 1.04858 1.77198 1.16282 0.83075 0.84230 0.77857 1.90881 1.54374 1.45569 1.60670 1.22141 0.96016 0.91224 0.97426 0.92267 0.94514 0.92145 0.99416 0.99070 0.93373 0.95993 0.90180 0.89049 0.90624 0.90132 0.92872 0.90189 0.87526 0.88476 0.86746 0.72341 0.95381 0.93969 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.71 8.40 71.98 0.60 -6.11 16 2 C 0.10 4.17 2.26 44.92 0.10 4.27 16 3 H 0.07 3.12 7.93 -2.38 -0.02 3.10 16 4 C 0.04 2.09 4.40 29.85 0.13 2.22 16 5 C -0.49 -28.06 8.80 25.60 0.23 -27.83 16 6 H 0.06 3.41 7.75 -2.91 -0.02 3.39 16 7 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 8 N -0.94 -58.14 13.29 21.45 0.28 -57.85 16 9 Si 0.96 44.85 29.54 68.60 2.03 46.87 16 10 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 11 H -0.29 -13.20 7.11 99.48 0.71 -12.49 16 12 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 13 N -0.52 -20.73 4.26 -871.12 -3.71 -24.44 16 14 C 0.05 1.58 5.18 86.33 0.45 2.02 16 15 C -0.10 -2.71 6.09 30.65 0.19 -2.53 16 16 C -0.12 -3.38 5.33 30.68 0.16 -3.22 16 17 C 0.19 6.10 2.94 45.05 0.13 6.23 16 18 H 0.10 3.16 8.10 -2.39 -0.02 3.14 16 19 N -0.63 -18.02 2.85 -813.97 -2.32 -20.33 16 20 C 0.08 1.50 7.65 86.65 0.66 2.16 16 21 C 0.10 1.30 8.06 86.65 0.70 1.99 16 22 N -0.74 -15.51 6.37 -477.37 -3.04 -18.55 16 23 C 0.69 21.48 8.06 179.57 1.45 22.93 16 24 O -0.63 -25.49 14.97 -4.00 -0.06 -25.55 16 25 C 0.06 2.46 3.78 86.33 0.33 2.79 16 26 H 0.06 2.09 6.93 -2.38 -0.02 2.07 16 27 H 0.04 1.55 6.45 -2.39 -0.02 1.53 16 28 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 29 H -0.01 -0.72 8.14 -2.39 -0.02 -0.74 16 30 H -0.01 -0.54 6.39 -2.39 -0.02 -0.55 16 31 H 0.26 15.03 8.31 -92.70 -0.77 14.26 16 32 H 0.02 0.73 6.98 -2.39 -0.02 0.71 16 33 H 0.08 2.42 7.98 -2.39 -0.02 2.40 16 34 H 0.09 1.93 8.14 -2.38 -0.02 1.91 16 35 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 36 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.05 1.77 6.72 -2.39 -0.02 1.75 16 38 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.11 1.41 8.14 -2.38 -0.02 1.39 16 40 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.43 7.44 8.96 -92.70 -0.83 6.61 16 43 H 0.03 1.23 5.19 -2.39 -0.01 1.22 16 44 H 0.04 2.01 6.28 -2.39 -0.02 1.99 16 Total: -1.00 -75.61 336.25 -1.07 -76.68 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.16 Total: 18.12 kcal Atomic # 6 Polarization: -0.53 SS G_CDS: 5.59 Total: 5.06 kcal Atomic # 7 Polarization: -112.39 SS G_CDS: -8.78 Total: -121.18 kcal Atomic # 8 Polarization: -25.49 SS G_CDS: -0.06 Total: -25.55 kcal Atomic # 14 Polarization: 44.85 SS G_CDS: 2.03 Total: 46.87 kcal Total: -75.61 -1.07 -76.68 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567989381.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.525 kcal (2) G-P(sol) polarization free energy of solvation -75.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.680 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds