Wall clock time and date at job start Tue Mar 31 2020 05:54:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47065 * 2 1 4 4 C 1.53005 * 109.46761 * 240.00060 * 2 1 3 5 5 C 1.50696 * 109.47257 * 64.45029 * 4 2 1 6 6 H 1.08001 * 120.00202 * 5.07005 * 5 4 2 7 7 C 1.37874 * 120.00281 * 185.07307 * 5 4 2 8 8 N 1.31525 * 119.99803 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00601 * 179.97438 * 7 5 4 10 10 H 1.48507 * 109.47024 * 359.97438 * 9 7 5 11 11 H 1.48497 * 109.47481 * 119.99783 * 9 7 5 12 12 H 1.48503 * 109.47513 * 240.00211 * 9 7 5 13 13 N 1.46894 * 109.47212 * 120.00234 * 2 1 3 14 14 C 1.46847 * 111.00345 * 60.84504 * 13 2 1 15 15 C 1.53034 * 109.52511 * 185.84118 * 14 13 2 16 16 C 1.53115 * 109.27724 * 300.81549 * 15 14 13 17 17 C 1.53119 * 109.16017 * 57.65868 * 16 15 14 18 18 H 1.09005 * 109.50723 * 62.28177 * 17 16 15 19 19 N 1.46496 * 109.54041 * 182.38287 * 17 16 15 20 20 C 1.47050 * 125.41144 * 239.54618 * 19 17 16 21 21 C 1.54111 * 103.86161 * 179.86895 * 20 19 17 22 22 N 1.47050 * 103.86189 * 0.36905 * 21 20 19 23 23 C 1.33950 * 109.18057 * 359.75558 * 22 21 20 24 24 O 1.21581 * 123.04316 * 179.97438 * 23 22 21 25 25 C 1.46845 * 111.00184 * 185.05480 * 13 2 1 26 26 H 1.08997 * 109.47065 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47268 * 300.00011 * 1 2 3 28 28 H 1.08995 * 109.47303 * 60.00133 * 1 2 3 29 29 H 1.09005 * 109.46615 * 184.44561 * 4 2 1 30 30 H 1.08996 * 109.47280 * 304.44757 * 4 2 1 31 31 H 0.96995 * 119.99777 * 180.02562 * 8 7 5 32 32 H 1.09002 * 109.46315 * 305.85593 * 14 13 2 33 33 H 1.09001 * 109.46160 * 65.82088 * 14 13 2 34 34 H 1.09004 * 109.50677 * 60.76278 * 15 14 13 35 35 H 1.09005 * 109.50504 * 180.87515 * 15 14 13 36 36 H 1.08990 * 109.52774 * 297.75268 * 16 15 14 37 37 H 1.09001 * 109.57348 * 177.58912 * 16 15 14 38 38 H 1.09002 * 110.55052 * 298.58442 * 20 19 17 39 39 H 1.08998 * 110.55337 * 61.40001 * 20 19 17 40 40 H 1.09009 * 110.74999 * 241.67548 * 21 20 19 41 41 H 1.08996 * 110.46544 * 118.92324 * 21 20 19 42 42 H 0.97002 * 125.41089 * 179.76605 * 22 21 20 43 43 H 1.09004 * 109.46245 * 294.17871 * 25 13 2 44 44 H 1.08996 * 109.46346 * 54.14107 * 25 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 1.6296 0.0499 -2.4773 6 1 1.1339 1.0040 -2.3752 7 6 1.8870 -0.4624 -3.7311 8 7 2.4911 -1.6241 -3.8555 9 14 1.3778 0.4931 -5.2533 10 1 0.7200 1.7604 -4.8451 11 1 2.5792 0.7993 -6.0705 12 1 0.4286 -0.3210 -6.0543 13 7 2.0197 -0.6925 1.1994 14 6 1.5655 -2.0888 1.2232 15 6 1.9691 -2.7353 2.5503 16 6 3.4915 -2.6717 2.7011 17 6 3.9436 -1.2108 2.6244 18 1 3.5045 -0.6502 3.4497 19 7 5.4045 -1.1448 2.7108 20 6 6.1653 -0.4273 3.7445 21 6 7.6367 -0.6862 3.3665 22 7 7.5486 -1.5145 2.1546 23 6 6.2594 -1.7238 1.8574 24 8 5.8978 -2.3794 0.8995 25 6 3.4826 -0.6084 1.2952 26 1 -0.3633 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 3.1271 -0.7908 -1.2104 30 1 1.6130 -1.7233 -1.2901 31 1 2.6725 -1.9844 -4.7376 32 1 0.4808 -2.1197 1.1193 33 1 2.0248 -2.6342 0.3989 34 1 1.4990 -2.1988 3.3744 35 1 1.6455 -3.7761 2.5613 36 1 3.9611 -3.2409 1.8989 37 1 3.7810 -3.0925 3.6640 38 1 5.9422 0.6392 3.7128 39 1 5.9485 -0.8353 4.7317 40 1 8.1508 -1.2257 4.1621 41 1 8.1460 0.2532 3.1516 42 1 8.3041 -1.8554 1.6507 43 1 3.9330 -1.1608 0.4705 44 1 3.7905 0.4359 1.2436 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000567989382.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:46 Heat of formation + Delta-G solvation = -14.344738 kcal Electronic energy + Delta-G solvation = -23552.799836 eV Core-core repulsion = 20312.229254 eV Total energy + Delta-G solvation = -3240.570582 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.02455 -38.68294 -36.15245 -35.27254 -33.19635 -32.20843 -30.13166 -29.42417 -28.27693 -26.85781 -24.20879 -23.10219 -23.02056 -22.81700 -20.98768 -19.24086 -18.40845 -17.54952 -16.49998 -16.43128 -15.79060 -15.08145 -14.62128 -14.48362 -14.28429 -13.93531 -13.74057 -13.60783 -13.45982 -13.10283 -12.76680 -12.48918 -12.36982 -12.04212 -11.95100 -11.64758 -11.26740 -11.02077 -10.86805 -10.77907 -10.62664 -10.38859 -10.09529 -10.06600 -9.77424 -9.68251 -9.46800 -9.19675 -8.98921 -8.46496 -8.26866 -7.37059 -5.91248 -3.93898 2.61397 3.32962 3.34991 3.42314 3.45988 3.87171 4.27473 4.50547 4.65811 4.72493 4.91084 5.13186 5.19226 5.23082 5.35627 5.43230 5.47132 5.54248 5.64607 5.83386 5.91495 6.00356 6.04764 6.17905 6.24507 6.39218 6.43300 6.48597 6.50099 6.61197 6.71701 6.85851 6.95064 7.05356 7.10452 7.13443 7.63304 7.65814 7.71812 7.81100 7.98155 8.10532 8.52050 8.77164 9.13057 9.69072 11.19652 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018411 B = 0.005002 C = 0.004366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1520.430967 B = 5596.322830 C = 6411.562854 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.082 3.918 3 H 0.066 0.934 4 C -0.003 4.003 5 C -0.514 4.514 6 H 0.056 0.944 7 C 0.057 3.943 8 N -0.892 5.892 9 Si 0.888 3.112 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.285 1.285 13 N -0.533 5.533 14 C 0.046 3.954 15 C -0.109 4.109 16 C -0.133 4.133 17 C 0.190 3.810 18 H 0.092 0.908 19 N -0.629 5.629 20 C 0.093 3.907 21 C 0.094 3.906 22 N -0.748 5.748 23 C 0.694 3.306 24 O -0.568 6.568 25 C 0.040 3.960 26 H 0.046 0.954 27 H 0.038 0.962 28 H 0.065 0.935 29 H 0.014 0.986 30 H 0.022 0.978 31 H 0.259 0.741 32 H 0.076 0.924 33 H 0.045 0.955 34 H 0.065 0.935 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.056 0.944 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.079 0.921 42 H 0.427 0.573 43 H 0.065 0.935 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.256 1.457 19.382 20.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.025 4.025 3 H 0.084 0.916 4 C -0.041 4.041 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.144 4.144 8 N -0.531 5.531 9 Si 0.716 3.284 10 H -0.197 1.197 11 H -0.211 1.211 12 H -0.211 1.211 13 N -0.258 5.258 14 C -0.082 4.082 15 C -0.147 4.147 16 C -0.172 4.172 17 C 0.088 3.912 18 H 0.110 0.890 19 N -0.369 5.369 20 C -0.031 4.031 21 C -0.031 4.031 22 N -0.411 5.411 23 C 0.394 3.606 24 O -0.444 6.444 25 C -0.089 4.089 26 H 0.065 0.935 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.033 0.967 30 H 0.040 0.960 31 H 0.068 0.932 32 H 0.094 0.906 33 H 0.064 0.936 34 H 0.083 0.917 35 H 0.083 0.917 36 H 0.098 0.902 37 H 0.075 0.925 38 H 0.099 0.901 39 H 0.097 0.903 40 H 0.096 0.904 41 H 0.097 0.903 42 H 0.268 0.732 43 H 0.083 0.917 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.734 1.244 19.180 20.366 hybrid contribution 0.686 0.033 -1.778 1.906 sum 7.421 1.277 17.402 18.961 Atomic orbital electron populations 1.21721 0.95291 1.01030 1.00444 1.21808 0.94917 0.97369 0.88432 0.91566 1.19685 0.96396 0.96325 0.91717 1.21186 1.38112 1.05133 0.90817 0.92567 1.25029 0.95353 0.94978 0.99082 1.70004 1.41993 1.18037 1.23102 0.86595 0.78221 0.80121 0.83422 1.19734 1.21149 1.21095 1.62307 1.08872 1.13947 1.40673 1.22133 1.00564 0.89270 0.96232 1.21527 0.94595 1.00175 0.98444 1.21975 0.96720 0.96279 1.02197 1.20798 0.74512 0.96829 0.99078 0.89009 1.47331 1.05810 1.54859 1.28865 1.22345 0.89658 0.98270 0.92840 1.22278 0.96665 0.95983 0.88193 1.45154 1.07172 1.57806 1.31004 1.16004 0.81540 0.80331 0.82685 1.91035 1.79131 1.44500 1.29741 1.22352 0.89382 1.00508 0.96627 0.93464 0.94271 0.91624 0.96739 0.95950 0.93164 0.90616 0.93642 0.91655 0.91694 0.90246 0.92533 0.90146 0.90324 0.90379 0.90316 0.73214 0.91719 0.91665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.50 8.80 37.16 0.33 -2.17 16 2 C 0.08 1.78 2.38 -67.71 -0.16 1.61 16 3 H 0.07 1.46 8.08 -51.93 -0.42 1.04 16 4 C 0.00 -0.08 3.73 -27.88 -0.10 -0.19 16 5 C -0.51 -14.84 8.30 -34.44 -0.29 -15.13 16 6 H 0.06 1.57 7.22 -52.49 -0.38 1.19 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.59 16 8 N -0.89 -28.08 13.29 55.43 0.74 -27.34 16 9 Si 0.89 22.32 29.54 -169.99 -5.02 17.30 16 10 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 12 H -0.28 -7.07 7.11 56.52 0.40 -6.67 16 13 N -0.53 -10.06 4.64 -226.70 -1.05 -11.11 16 14 C 0.05 0.84 4.64 -3.84 -0.02 0.82 16 15 C -0.11 -1.57 6.09 -26.65 -0.16 -1.73 16 16 C -0.13 -1.99 5.33 -26.61 -0.14 -2.13 16 17 C 0.19 2.81 2.94 -67.85 -0.20 2.61 16 18 H 0.09 1.17 8.10 -51.93 -0.42 0.75 16 19 N -0.63 -8.53 2.85 -171.10 -0.49 -9.01 16 20 C 0.09 0.77 7.65 -3.16 -0.02 0.75 16 21 C 0.09 0.67 8.06 -3.16 -0.03 0.64 16 22 N -0.75 -8.48 6.37 -64.70 -0.41 -8.89 16 23 C 0.69 11.21 8.06 -88.39 -0.71 10.50 16 24 O -0.57 -12.28 14.97 5.29 0.08 -12.20 16 25 C 0.04 0.76 4.34 -3.83 -0.02 0.74 16 26 H 0.05 0.91 6.30 -51.93 -0.33 0.58 16 27 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 28 H 0.06 1.36 7.02 -51.93 -0.36 0.99 16 29 H 0.01 0.43 6.45 -51.93 -0.33 0.10 16 30 H 0.02 0.65 6.77 -51.93 -0.35 0.29 16 31 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 32 H 0.08 1.33 6.03 -51.93 -0.31 1.01 16 33 H 0.05 0.99 6.72 -51.93 -0.35 0.64 16 34 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.47 6.72 -51.93 -0.35 1.12 16 37 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.08 0.38 8.14 -51.92 -0.42 -0.04 16 41 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.43 4.19 8.96 -40.82 -0.37 3.82 16 43 H 0.06 1.52 5.25 -51.93 -0.27 1.24 16 44 H 0.06 1.22 8.07 -51.93 -0.42 0.80 16 LS Contribution 333.91 15.07 5.03 5.03 Total: -1.00 -35.52 333.91 -9.93 -45.45 By element: Atomic # 1 Polarization: 10.07 SS G_CDS: -7.18 Total: 2.88 kcal Atomic # 6 Polarization: -0.47 SS G_CDS: -1.62 Total: -2.09 kcal Atomic # 7 Polarization: -55.15 SS G_CDS: -1.22 Total: -56.37 kcal Atomic # 8 Polarization: -12.28 SS G_CDS: 0.08 Total: -12.20 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.52 -9.93 -45.45 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000567989382.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.102 kcal (2) G-P(sol) polarization free energy of solvation -35.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.930 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.345 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds