Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.53507 * 2 1 4 4 C 1.53098 * 109.50645 * 239.88940 * 2 1 3 5 5 O 1.43010 * 109.25596 * 183.21380 * 4 2 1 6 6 C 1.43009 * 113.73857 * 58.67439 * 5 4 2 7 7 C 1.53098 * 109.25778 * 301.32514 * 6 5 4 8 8 N 1.47006 * 109.25834 * 56.85015 * 7 6 5 9 9 C 1.46897 * 111.00433 * 177.60465 * 8 7 6 10 10 C 1.53003 * 109.46752 * 66.04359 * 9 8 7 11 11 N 1.46901 * 109.47252 * 180.02562 * 10 9 8 12 12 C 1.46898 * 111.00283 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47386 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.46832 * 304.99869 * 13 12 11 15 15 C 1.47206 * 109.47168 * 64.99626 * 13 12 11 16 16 N 7.72327 * 96.25175 * 67.18891 * 2 1 3 17 17 C 1.52997 * 109.47232 * 184.99670 * 13 12 11 18 18 C 1.50697 * 109.47050 * 174.99758 * 17 13 12 19 19 H 1.08007 * 120.00134 * 0.02562 * 18 17 13 20 20 C 1.37882 * 119.99937 * 179.97438 * 18 17 13 21 21 N 1.31517 * 120.00060 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99925 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47381 * 89.99972 * 22 20 18 24 24 H 1.48505 * 109.46820 * 210.00035 * 22 20 18 25 25 H 1.48501 * 109.47179 * 329.99730 * 22 20 18 26 26 H 1.08999 * 109.47018 * 299.88838 * 1 2 3 27 27 H 1.08997 * 109.47607 * 59.89071 * 1 2 3 28 28 H 1.09005 * 109.47109 * 179.89336 * 1 2 3 29 29 H 1.09008 * 109.50500 * 63.27749 * 4 2 1 30 30 H 1.08996 * 109.54415 * 303.17633 * 4 2 1 31 31 H 1.09007 * 109.50419 * 181.38945 * 6 5 4 32 32 H 1.09000 * 109.54457 * 61.28449 * 6 5 4 33 33 H 1.08998 * 109.50610 * 296.91012 * 7 6 5 34 34 H 1.09004 * 109.53918 * 176.80444 * 7 6 5 35 35 H 1.09002 * 109.47327 * 306.05307 * 9 8 7 36 36 H 1.08994 * 109.47705 * 186.04358 * 9 8 7 37 37 H 1.09002 * 109.46868 * 60.00706 * 10 9 8 38 38 H 1.09002 * 109.47603 * 300.00324 * 10 9 8 39 39 H 1.00898 * 110.99971 * 303.95915 * 11 10 9 40 40 H 1.09004 * 109.47163 * 59.99599 * 12 11 10 41 41 H 1.09002 * 109.46852 * 300.00147 * 12 11 10 42 42 H 1.08994 * 109.47510 * 294.99830 * 17 13 12 43 43 H 1.09000 * 109.46818 * 55.00071 * 17 13 12 44 44 H 0.96996 * 120.00119 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7240 -1.2484 5 8 3.4693 -0.7867 -1.2056 6 6 3.9818 -1.4577 -0.0514 7 6 3.4903 -0.7412 1.2091 8 7 2.0210 -0.6951 1.1988 9 6 1.5054 -0.0644 2.4212 10 6 1.9158 1.4093 2.4467 11 7 1.4008 2.0400 3.6695 12 6 1.7758 3.4591 3.7280 13 6 1.2235 4.0800 5.0127 14 1 0.1477 3.9123 5.0639 15 6 1.8732 3.4570 6.1775 16 7 2.3711 2.9765 7.0769 17 6 1.5060 5.5836 5.0148 18 6 0.8561 6.2152 6.2188 19 1 0.2977 5.6050 6.9134 20 6 0.9751 7.5718 6.4344 21 7 0.4083 8.1229 7.4854 22 14 1.9414 8.6270 5.2335 23 1 1.0322 9.1271 4.1712 24 1 2.5389 9.7786 5.9562 25 1 3.0215 7.8144 4.6184 26 1 -0.3633 0.5121 0.8910 27 1 -0.3634 0.5155 -0.8889 28 1 -0.3633 -1.0277 -0.0019 29 1 1.7273 -0.1795 -2.1390 30 1 1.6332 -1.7343 -1.2768 31 1 5.0715 -1.4441 -0.0764 32 1 3.6309 -2.4897 -0.0438 33 1 3.8863 0.2741 1.2284 34 1 3.8313 -1.2818 2.0921 35 1 1.9180 -0.5715 3.2935 36 1 0.4182 -0.1391 2.4380 37 1 1.5032 1.9165 1.5745 38 1 3.0031 1.4842 2.4300 39 1 0.4007 1.9273 3.7407 40 1 1.3617 3.9803 2.8649 41 1 2.8621 3.5484 3.7196 42 1 2.5823 5.7511 5.0532 43 1 1.1009 6.0307 4.1069 44 1 0.4918 9.0773 7.6369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572511521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = -19.222880 kcal Electronic energy + Delta-G solvation = -22007.096621 eV Core-core repulsion = 18766.314507 eV Total energy + Delta-G solvation = -3240.782114 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.29903 -37.73145 -36.65130 -34.97152 -33.54568 -32.93929 -31.84751 -29.69782 -27.84295 -26.92369 -25.24476 -23.17301 -22.73028 -22.59293 -21.45078 -19.72316 -17.28120 -16.94937 -16.82053 -16.70451 -15.86568 -15.52742 -15.15594 -15.05593 -14.75110 -14.30710 -14.05858 -13.66547 -13.56934 -13.03072 -12.64812 -12.55546 -12.45785 -12.42362 -12.22645 -12.11582 -11.92705 -11.83884 -11.52162 -11.41717 -11.26201 -10.95045 -10.80144 -10.78786 -10.44387 -9.99078 -9.94598 -9.80720 -9.36086 -8.69212 -8.64422 -8.41902 -6.13350 -4.14220 3.23224 3.32530 3.33282 3.37635 3.54139 3.67733 3.76093 4.13526 4.35665 4.39354 4.59423 4.62190 4.73474 4.76560 4.86662 4.89630 5.00694 5.05023 5.21232 5.21355 5.29093 5.31037 5.34676 5.38642 5.48073 5.53315 5.56949 5.63194 5.70326 5.76478 5.82672 5.96736 6.16246 6.24976 6.59841 6.64309 6.80034 6.87884 6.92942 7.08696 7.32810 7.60601 8.37671 8.51821 8.90145 9.46375 10.99764 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025417 B = 0.003058 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.379369 B = 9154.999252 C = 9480.056176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.037 3.963 3 H 0.056 0.944 4 C 0.069 3.931 5 O -0.386 6.386 6 C 0.063 3.937 7 C 0.013 3.987 8 N -0.527 5.527 9 C 0.053 3.947 10 C 0.023 3.977 11 N -0.688 5.688 12 C 0.065 3.935 13 C 0.020 3.980 14 H 0.105 0.895 15 C 0.252 3.748 16 N -0.470 5.470 17 C -0.005 4.005 18 C -0.529 4.529 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.877 3.123 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.264 1.264 26 H 0.063 0.937 27 H 0.062 0.938 28 H 0.065 0.935 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.047 0.953 34 H 0.088 0.912 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.033 0.967 38 H 0.070 0.930 39 H 0.343 0.657 40 H 0.048 0.952 41 H 0.075 0.925 42 H 0.025 0.975 43 H 0.032 0.968 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.819 -17.811 -19.823 26.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 H 0.073 0.927 4 C -0.008 4.008 5 O -0.305 6.305 6 C -0.014 4.014 7 C -0.115 4.115 8 N -0.252 5.252 9 C -0.075 4.075 10 C -0.108 4.108 11 N -0.319 5.319 12 C -0.065 4.065 13 C -0.002 4.002 14 H 0.123 0.877 15 C -0.065 4.065 16 N -0.146 5.146 17 C -0.044 4.044 18 C -0.566 4.566 19 H 0.092 0.908 20 C -0.131 4.131 21 N -0.535 5.535 22 Si 0.704 3.296 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.189 1.189 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.084 0.916 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.115 0.885 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.107 0.893 35 H 0.104 0.896 36 H 0.100 0.900 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.161 0.839 40 H 0.066 0.934 41 H 0.094 0.906 42 H 0.043 0.957 43 H 0.050 0.950 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.023 -18.996 -18.147 26.444 hybrid contribution -0.209 2.140 -1.146 2.436 sum 2.814 -16.856 -19.293 25.773 Atomic orbital electron populations 1.21817 0.93346 1.02831 1.02365 1.22379 0.96532 0.97010 0.91193 0.92655 1.22725 0.80874 1.00294 0.96955 1.87989 1.20736 1.78494 1.43260 1.22678 0.98979 0.95610 0.84098 1.22840 0.88260 1.00743 0.99679 1.62548 1.08352 1.52261 1.02005 1.22247 1.01075 0.91980 0.92196 1.22627 1.00895 0.95991 0.91278 1.60430 1.18791 1.15060 1.37636 1.22095 1.01401 0.86696 0.96342 1.18944 0.99260 0.96625 0.85379 0.87746 1.28629 0.92894 0.91291 0.93703 1.80948 1.10379 1.11894 1.11396 1.19633 0.97992 0.87973 0.98793 1.21025 1.33914 0.93594 1.08105 0.90752 1.24995 0.94992 0.97950 0.95178 1.69903 1.44062 1.11887 1.27597 0.86817 0.80949 0.80348 0.81443 1.20048 1.21247 1.18898 0.91852 0.91894 0.91578 0.88588 0.92303 0.88464 0.92307 0.93433 0.89337 0.89575 0.90043 0.94937 0.91142 0.83934 0.93379 0.90610 0.95666 0.94996 0.92528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.99 8.89 37.16 0.33 -0.66 16 2 C 0.04 0.30 2.05 -67.60 -0.14 0.17 16 3 H 0.06 0.52 6.40 -51.93 -0.33 0.18 16 4 C 0.07 0.54 6.29 37.21 0.23 0.78 16 5 O -0.39 -3.80 10.83 -35.23 -0.38 -4.18 16 6 C 0.06 0.50 7.01 37.21 0.26 0.76 16 7 C 0.01 0.11 5.33 -3.72 -0.02 0.09 16 8 N -0.53 -4.62 4.75 -226.34 -1.07 -5.69 16 9 C 0.05 0.48 5.11 -3.82 -0.02 0.46 16 10 C 0.02 0.23 4.97 -3.82 -0.02 0.21 16 11 N -0.69 -8.17 6.20 -113.78 -0.71 -8.88 16 12 C 0.06 0.88 5.05 -3.83 -0.02 0.86 16 13 C 0.02 0.35 2.35 -93.41 -0.22 0.13 16 14 H 0.10 1.69 8.14 -51.93 -0.42 1.26 16 15 C 0.25 5.19 13.66 -20.80 -0.28 4.90 16 16 N -0.47 -10.67 18.53 42.11 0.78 -9.89 16 17 C 0.00 -0.10 3.49 -27.89 -0.10 -0.20 16 18 C -0.53 -14.19 9.15 -34.44 -0.32 -14.51 16 19 H 0.07 2.19 7.84 -52.48 -0.41 1.78 16 20 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 21 N -0.90 -27.02 13.96 55.43 0.77 -26.25 16 22 Si 0.88 20.60 27.47 -169.99 -4.67 15.93 16 23 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 26 H 0.06 0.45 6.43 -51.93 -0.33 0.12 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 29 H 0.10 0.62 8.14 -51.92 -0.42 0.20 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.10 0.63 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.05 0.45 6.59 -51.93 -0.34 0.10 16 34 H 0.09 0.69 8.12 -51.93 -0.42 0.27 16 35 H 0.09 0.86 8.11 -51.93 -0.42 0.44 16 36 H 0.08 0.69 6.40 -51.93 -0.33 0.36 16 37 H 0.03 0.32 6.42 -51.93 -0.33 -0.01 16 38 H 0.07 0.79 6.61 -51.93 -0.34 0.44 16 39 H 0.34 3.60 8.73 -39.29 -0.34 3.26 16 40 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 42 H 0.03 0.55 7.20 -51.93 -0.37 0.18 16 43 H 0.03 0.63 7.57 -51.93 -0.39 0.24 16 44 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 349.32 15.07 5.26 5.26 Total: -1.00 -31.84 349.32 -7.77 -39.61 By element: Atomic # 1 Polarization: 6.54 SS G_CDS: -7.35 Total: -0.81 kcal Atomic # 6 Polarization: -4.70 SS G_CDS: -0.41 Total: -5.11 kcal Atomic # 7 Polarization: -50.48 SS G_CDS: -0.23 Total: -50.71 kcal Atomic # 8 Polarization: -3.80 SS G_CDS: -0.38 Total: -4.18 kcal Atomic # 14 Polarization: 20.60 SS G_CDS: -4.67 Total: 15.93 kcal Total LS contribution 5.26 Total: 5.26 kcal Total: -31.84 -7.77 -39.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572511521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.388 kcal (2) G-P(sol) polarization free energy of solvation -31.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.611 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds