Wall clock time and date at job start Tue Mar 31 2020 05:52:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09001 * 109.53507 * 2 1 4 4 C 1.53098 * 109.50645 * 239.88940 * 2 1 3 5 5 O 1.43010 * 109.25596 * 183.21380 * 4 2 1 6 6 C 1.43009 * 113.73857 * 58.67439 * 5 4 2 7 7 C 1.53098 * 109.25778 * 301.32514 * 6 5 4 8 8 N 1.47006 * 109.25834 * 56.85015 * 7 6 5 9 9 C 1.46897 * 111.00433 * 177.60465 * 8 7 6 10 10 C 1.53003 * 109.46752 * 66.04359 * 9 8 7 11 11 N 1.46901 * 109.47252 * 180.02562 * 10 9 8 12 12 C 1.46898 * 111.00283 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47386 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.46832 * 304.99869 * 13 12 11 15 15 C 1.47206 * 109.47168 * 64.99626 * 13 12 11 16 16 N 7.72327 * 96.25175 * 67.18891 * 2 1 3 17 17 C 1.52997 * 109.47232 * 184.99670 * 13 12 11 18 18 C 1.50697 * 109.47050 * 174.99758 * 17 13 12 19 19 H 1.08007 * 120.00134 * 0.02562 * 18 17 13 20 20 C 1.37882 * 119.99937 * 179.97438 * 18 17 13 21 21 N 1.31517 * 120.00060 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99925 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47381 * 89.99972 * 22 20 18 24 24 H 1.48505 * 109.46820 * 210.00035 * 22 20 18 25 25 H 1.48501 * 109.47179 * 329.99730 * 22 20 18 26 26 H 1.08999 * 109.47018 * 299.88838 * 1 2 3 27 27 H 1.08997 * 109.47607 * 59.89071 * 1 2 3 28 28 H 1.09005 * 109.47109 * 179.89336 * 1 2 3 29 29 H 1.09008 * 109.50500 * 63.27749 * 4 2 1 30 30 H 1.08996 * 109.54415 * 303.17633 * 4 2 1 31 31 H 1.09007 * 109.50419 * 181.38945 * 6 5 4 32 32 H 1.09000 * 109.54457 * 61.28449 * 6 5 4 33 33 H 1.08998 * 109.50610 * 296.91012 * 7 6 5 34 34 H 1.09004 * 109.53918 * 176.80444 * 7 6 5 35 35 H 1.09002 * 109.47327 * 306.05307 * 9 8 7 36 36 H 1.08994 * 109.47705 * 186.04358 * 9 8 7 37 37 H 1.09002 * 109.46868 * 60.00706 * 10 9 8 38 38 H 1.09002 * 109.47603 * 300.00324 * 10 9 8 39 39 H 1.00898 * 110.99971 * 303.95915 * 11 10 9 40 40 H 1.09004 * 109.47163 * 59.99599 * 12 11 10 41 41 H 1.09002 * 109.46852 * 300.00147 * 12 11 10 42 42 H 1.08994 * 109.47510 * 294.99830 * 17 13 12 43 43 H 1.09000 * 109.46818 * 55.00071 * 17 13 12 44 44 H 0.96996 * 120.00119 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0413 -0.7240 -1.2484 5 8 3.4693 -0.7867 -1.2056 6 6 3.9818 -1.4577 -0.0514 7 6 3.4903 -0.7412 1.2091 8 7 2.0210 -0.6951 1.1988 9 6 1.5054 -0.0644 2.4212 10 6 1.9158 1.4093 2.4467 11 7 1.4008 2.0400 3.6695 12 6 1.7758 3.4591 3.7280 13 6 1.2235 4.0800 5.0127 14 1 0.1477 3.9123 5.0639 15 6 1.8732 3.4570 6.1775 16 7 2.3711 2.9765 7.0769 17 6 1.5060 5.5836 5.0148 18 6 0.8561 6.2152 6.2188 19 1 0.2977 5.6050 6.9134 20 6 0.9751 7.5718 6.4344 21 7 0.4083 8.1229 7.4854 22 14 1.9414 8.6270 5.2335 23 1 1.0322 9.1271 4.1712 24 1 2.5389 9.7786 5.9562 25 1 3.0215 7.8144 4.6184 26 1 -0.3633 0.5121 0.8910 27 1 -0.3634 0.5155 -0.8889 28 1 -0.3633 -1.0277 -0.0019 29 1 1.7273 -0.1795 -2.1390 30 1 1.6332 -1.7343 -1.2768 31 1 5.0715 -1.4441 -0.0764 32 1 3.6309 -2.4897 -0.0438 33 1 3.8863 0.2741 1.2284 34 1 3.8313 -1.2818 2.0921 35 1 1.9180 -0.5715 3.2935 36 1 0.4182 -0.1391 2.4380 37 1 1.5032 1.9165 1.5745 38 1 3.0031 1.4842 2.4300 39 1 0.4007 1.9273 3.7407 40 1 1.3617 3.9803 2.8649 41 1 2.8621 3.5484 3.7196 42 1 2.5823 5.7511 5.0532 43 1 1.1009 6.0307 4.1069 44 1 0.4918 9.0773 7.6369 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000572511521.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:02 Heat of formation + Delta-G solvation = -43.382136 kcal Electronic energy + Delta-G solvation = -22008.144245 eV Core-core repulsion = 18766.314507 eV Total energy + Delta-G solvation = -3241.829738 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.95592 -38.92266 -37.65288 -36.22869 -35.26216 -33.72139 -33.38164 -30.68194 -28.89590 -27.88080 -26.24237 -23.99620 -23.64961 -23.51619 -23.13527 -20.40713 -18.92852 -18.57647 -17.56336 -17.43699 -16.56801 -16.49594 -16.34858 -15.90527 -15.71402 -15.59205 -15.21618 -14.80806 -14.66234 -14.37157 -14.15208 -13.85231 -13.52223 -13.37008 -13.16800 -13.10680 -12.99114 -12.85066 -12.73662 -12.45161 -12.38869 -12.13543 -12.11901 -11.68998 -11.67854 -11.59628 -11.39612 -11.29187 -10.74453 -10.58985 -9.47376 -9.23957 -8.26110 -6.31787 1.40699 1.44230 1.54091 2.04730 2.11608 2.39513 2.70392 2.94659 3.09824 3.20270 3.32228 3.78262 3.94312 3.96484 4.06478 4.15437 4.18870 4.24972 4.28674 4.36205 4.45515 4.55920 4.66056 4.66837 4.72283 4.73460 4.81196 4.86164 4.88584 4.93608 5.00035 5.05132 5.11120 5.20888 5.36896 5.42734 5.61541 5.86209 5.99181 6.06303 6.18834 6.24780 6.47949 6.75931 6.89242 7.32803 8.90869 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025417 B = 0.003058 C = 0.002953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.379369 B = 9154.999252 C = 9480.056176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.038 3.962 3 H 0.045 0.955 4 C 0.066 3.934 5 O -0.407 6.407 6 C 0.063 3.937 7 C 0.013 3.987 8 N -0.530 5.530 9 C 0.060 3.940 10 C 0.033 3.967 11 N -0.698 5.698 12 C 0.077 3.923 13 C 0.025 3.975 14 H 0.119 0.881 15 C 0.263 3.737 16 N -0.515 5.515 17 C -0.003 4.003 18 C -0.531 4.531 19 H 0.030 0.970 20 C 0.003 3.997 21 N -0.954 5.954 22 Si 0.948 3.052 23 H -0.256 1.256 24 H -0.295 1.295 25 H -0.240 1.240 26 H 0.061 0.939 27 H 0.074 0.926 28 H 0.066 0.934 29 H 0.109 0.891 30 H 0.062 0.938 31 H 0.110 0.890 32 H 0.063 0.937 33 H 0.037 0.963 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.041 0.959 38 H 0.059 0.941 39 H 0.352 0.648 40 H 0.074 0.926 41 H 0.071 0.929 42 H 0.025 0.975 43 H 0.062 0.938 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.096 -18.147 -22.808 29.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.070 4.070 3 H 0.063 0.937 4 C -0.011 4.011 5 O -0.325 6.325 6 C -0.014 4.014 7 C -0.115 4.115 8 N -0.254 5.254 9 C -0.068 4.068 10 C -0.098 4.098 11 N -0.331 5.331 12 C -0.053 4.053 13 C 0.004 3.996 14 H 0.137 0.863 15 C -0.054 4.054 16 N -0.193 5.193 17 C -0.042 4.042 18 C -0.569 4.569 19 H 0.048 0.952 20 C -0.194 4.194 21 N -0.594 5.594 22 Si 0.771 3.229 23 H -0.180 1.180 24 H -0.222 1.222 25 H -0.163 1.163 26 H 0.080 0.920 27 H 0.093 0.907 28 H 0.085 0.915 29 H 0.127 0.873 30 H 0.081 0.919 31 H 0.128 0.872 32 H 0.081 0.919 33 H 0.055 0.945 34 H 0.110 0.890 35 H 0.093 0.907 36 H 0.108 0.892 37 H 0.059 0.941 38 H 0.077 0.923 39 H 0.171 0.829 40 H 0.092 0.908 41 H 0.089 0.911 42 H 0.043 0.957 43 H 0.080 0.920 44 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 3.293 -19.368 -21.157 28.872 hybrid contribution -0.349 2.166 -0.156 2.199 sum 2.944 -17.202 -21.313 27.547 Atomic orbital electron populations 1.21793 0.92197 1.03047 1.02894 1.22408 0.97398 0.96287 0.90939 0.93705 1.22853 0.80096 1.00729 0.97417 1.87961 1.21801 1.78805 1.43976 1.22769 0.99755 0.95536 0.83324 1.22853 0.88187 1.00274 1.00211 1.62585 1.08491 1.52235 1.02137 1.22162 1.01486 0.91167 0.92034 1.22549 1.00132 0.96465 0.90664 1.60344 1.19693 1.14137 1.38923 1.21915 1.01039 0.87732 0.94610 1.19054 1.00098 0.94428 0.86069 0.86316 1.29364 0.91941 0.90413 0.93662 1.80945 1.12050 1.13431 1.12838 1.19581 0.97322 0.90116 0.97209 1.21401 1.32988 0.93430 1.09107 0.95165 1.26040 0.96325 0.99794 0.97220 1.70086 1.46647 1.12298 1.30414 0.85689 0.80068 0.78046 0.79065 1.18037 1.22166 1.16294 0.92019 0.90668 0.91509 0.87262 0.91942 0.87233 0.91868 0.94478 0.88981 0.90671 0.89186 0.94085 0.92250 0.82878 0.90777 0.91056 0.95711 0.91967 0.92626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 8.89 71.98 0.64 -0.94 16 2 C 0.04 0.55 2.05 44.93 0.09 0.64 16 3 H 0.05 0.74 6.40 -2.39 -0.02 0.73 16 4 C 0.07 0.92 6.29 72.01 0.45 1.37 16 5 O -0.41 -7.39 10.83 -148.98 -1.61 -9.01 16 6 C 0.06 0.91 7.01 72.01 0.50 1.42 16 7 C 0.01 0.20 5.33 86.32 0.46 0.66 16 8 N -0.53 -8.42 4.75 -870.02 -4.13 -12.55 16 9 C 0.06 0.98 5.11 86.30 0.44 1.42 16 10 C 0.03 0.59 4.97 86.30 0.43 1.01 16 11 N -0.70 -14.92 6.20 -513.88 -3.19 -18.10 16 12 C 0.08 1.86 5.05 86.30 0.44 2.30 16 13 C 0.03 0.83 2.35 -12.60 -0.03 0.80 16 14 H 0.12 3.59 8.14 -2.39 -0.02 3.57 16 15 C 0.26 10.68 13.66 89.46 1.22 11.90 16 16 N -0.52 -23.60 18.53 19.99 0.37 -23.23 16 17 C 0.00 -0.13 3.49 29.85 0.10 -0.03 16 18 C -0.53 -28.57 9.15 25.60 0.23 -28.34 16 19 H 0.03 1.84 7.84 -2.91 -0.02 1.81 16 20 C 0.00 0.16 5.47 84.66 0.46 0.63 16 21 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 22 Si 0.95 41.42 27.47 68.60 1.88 43.31 16 23 H -0.26 -10.36 7.11 99.48 0.71 -9.66 16 24 H -0.30 -13.23 7.11 99.48 0.71 -12.53 16 25 H -0.24 -9.44 6.54 99.48 0.65 -8.79 16 26 H 0.06 0.71 6.43 -2.39 -0.02 0.70 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 29 H 0.11 1.19 8.14 -2.38 -0.02 1.17 16 30 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.11 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.06 0.85 8.14 -2.39 -0.02 0.83 16 33 H 0.04 0.66 6.59 -2.39 -0.02 0.65 16 34 H 0.09 1.35 8.12 -2.38 -0.02 1.33 16 35 H 0.07 1.41 8.11 -2.39 -0.02 1.39 16 36 H 0.09 1.33 6.40 -2.39 -0.02 1.31 16 37 H 0.04 0.69 6.42 -2.39 -0.02 0.67 16 38 H 0.06 1.22 6.61 -2.39 -0.02 1.21 16 39 H 0.35 6.46 8.73 -89.70 -0.78 5.67 16 40 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 41 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 42 H 0.02 1.01 7.20 -2.39 -0.02 0.99 16 43 H 0.06 2.18 7.57 -2.39 -0.02 2.16 16 44 H 0.26 15.35 8.31 -92.71 -0.77 14.58 16 Total: -1.00 -70.23 349.32 -0.78 -71.01 By element: Atomic # 1 Polarization: 14.27 SS G_CDS: 0.15 Total: 14.42 kcal Atomic # 6 Polarization: -12.60 SS G_CDS: 5.45 Total: -7.15 kcal Atomic # 7 Polarization: -105.93 SS G_CDS: -6.65 Total: -112.58 kcal Atomic # 8 Polarization: -7.39 SS G_CDS: -1.61 Total: -9.01 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 1.88 Total: 43.31 kcal Total: -70.23 -0.78 -71.01 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572511521.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.631 kcal (2) G-P(sol) polarization free energy of solvation -70.234 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.013 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds