Wall clock time and date at job start Tue Mar 31 2020 05:52:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08995 * 109.50703 * 2 1 4 4 C 1.53098 * 109.50313 * 239.86947 * 2 1 3 5 5 O 1.43015 * 109.29196 * 183.23929 * 4 2 1 6 6 C 1.43020 * 113.73974 * 58.60103 * 5 4 2 7 7 C 1.53095 * 109.29124 * 301.39847 * 6 5 4 8 8 N 1.47015 * 109.25739 * 56.82758 * 7 6 5 9 9 C 1.46904 * 110.99903 * 177.60628 * 8 7 6 10 10 C 1.52993 * 109.47389 * 293.95178 * 9 8 7 11 11 N 1.46892 * 109.47470 * 180.02562 * 10 9 8 12 12 C 1.46904 * 111.00330 * 180.02562 * 11 10 9 13 13 C 1.52998 * 109.47111 * 180.02562 * 12 11 10 14 14 H 1.09002 * 109.47579 * 54.99404 * 13 12 11 15 15 C 1.47195 * 109.47047 * 294.99440 * 13 12 11 16 16 N 7.91588 * 95.80111 * 76.77614 * 2 1 3 17 17 C 1.53005 * 109.46995 * 174.99628 * 13 12 11 18 18 C 1.50694 * 109.46988 * 184.99623 * 17 13 12 19 19 H 1.07998 * 120.00440 * 0.02562 * 18 17 13 20 20 C 1.37883 * 119.99909 * 180.02562 * 18 17 13 21 21 N 1.31510 * 119.99826 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 119.99960 * 180.02562 * 20 18 17 23 23 H 1.48506 * 109.47319 * 89.99699 * 22 20 18 24 24 H 1.48502 * 109.47239 * 209.99863 * 22 20 18 25 25 H 1.48495 * 109.47369 * 329.99794 * 22 20 18 26 26 H 1.09000 * 109.46852 * 299.91242 * 1 2 3 27 27 H 1.08998 * 109.47111 * 59.91475 * 1 2 3 28 28 H 1.08999 * 109.46939 * 179.91513 * 1 2 3 29 29 H 1.09009 * 109.50876 * 303.15024 * 4 2 1 30 30 H 1.08998 * 109.50857 * 63.23676 * 4 2 1 31 31 H 1.09002 * 109.50941 * 181.44210 * 6 5 4 32 32 H 1.09003 * 109.50633 * 61.35674 * 6 5 4 33 33 H 1.08994 * 109.50879 * 176.75932 * 7 6 5 34 34 H 1.09001 * 109.51139 * 296.84838 * 7 6 5 35 35 H 1.09004 * 109.47055 * 53.95500 * 9 8 7 36 36 H 1.09002 * 109.46802 * 173.95218 * 9 8 7 37 37 H 1.09004 * 109.47285 * 300.00182 * 10 9 8 38 38 H 1.09001 * 109.46689 * 59.99912 * 10 9 8 39 39 H 1.00899 * 111.00585 * 56.04455 * 11 10 9 40 40 H 1.09008 * 109.46613 * 299.99382 * 12 11 10 41 41 H 1.08994 * 109.47423 * 59.99636 * 12 11 10 42 42 H 1.08991 * 109.46904 * 305.00060 * 17 13 12 43 43 H 1.09005 * 109.46959 * 64.99933 * 17 13 12 44 44 H 0.97004 * 119.99923 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0412 -0.7244 -1.2481 5 8 3.4693 -0.7881 -1.2059 6 6 3.9819 -1.4579 -0.0509 7 6 3.4904 -0.7410 1.2093 8 7 2.0210 -0.6948 1.1990 9 6 1.5056 -0.0635 2.4213 10 6 1.8335 -0.9452 3.6279 11 7 1.3176 -0.3143 4.8500 12 6 1.6153 -1.1344 6.0319 13 6 1.0632 -0.4466 7.2821 14 1 -0.0001 -0.2476 7.1478 15 6 1.7763 0.8226 7.4993 16 7 2.3301 1.8015 7.6665 17 6 1.2622 -1.3575 8.4952 18 6 0.6101 -0.7354 9.7029 19 1 0.1039 0.2145 9.6141 20 6 0.6597 -1.3788 10.9214 21 7 1.2757 -2.5357 11.0295 22 14 -0.1493 -0.6079 12.4183 23 1 -1.5578 -1.0689 12.5122 24 1 0.5869 -1.0132 13.6426 25 1 -0.1201 0.8712 12.2901 26 1 -0.3633 0.5125 0.8908 27 1 -0.3633 0.5151 -0.8892 28 1 -0.3633 -1.0277 -0.0015 29 1 1.6331 -1.7349 -1.2753 30 1 1.7266 -0.1808 -2.1390 31 1 5.0715 -1.4444 -0.0758 32 1 3.6308 -2.4899 -0.0429 33 1 3.8313 -1.2817 2.0921 34 1 3.8869 0.2742 1.2287 35 1 1.9700 0.9143 2.5488 36 1 0.4250 0.0551 2.3410 37 1 1.3690 -1.9230 3.5004 38 1 2.9140 -1.0638 3.7081 39 1 0.3276 -0.1348 4.7742 40 1 1.1499 -2.1139 5.9210 41 1 2.6943 -1.2537 6.1290 42 1 0.8097 -2.3293 8.2980 43 1 2.3284 -1.4846 8.6831 44 1 1.3103 -2.9885 11.8866 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572511522.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:05 Heat of formation + Delta-G solvation = -24.446986 kcal Electronic energy + Delta-G solvation = -21663.709270 eV Core-core repulsion = 18422.700621 eV Total energy + Delta-G solvation = -3241.008648 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.10697 -37.57392 -36.48823 -35.01426 -33.59543 -32.93871 -31.70081 -29.55232 -27.67606 -26.75240 -25.30520 -23.06819 -22.63701 -21.98456 -21.47496 -20.29213 -17.15662 -16.82700 -16.64760 -16.37997 -15.88051 -15.50280 -15.13147 -14.80643 -14.72541 -14.47010 -14.00454 -13.69115 -13.49636 -12.87307 -12.77076 -12.48044 -12.42194 -12.29747 -12.07155 -11.94826 -11.83868 -11.54067 -11.47313 -11.19183 -11.06353 -10.83533 -10.75922 -10.69282 -10.53014 -10.25826 -9.91221 -9.55586 -9.24187 -8.67954 -8.47537 -8.34074 -6.11044 -4.14238 3.28091 3.31440 3.35214 3.40081 3.55104 3.72827 3.81842 4.30484 4.39729 4.45884 4.60444 4.61771 4.79227 4.89009 4.92488 4.95280 5.11624 5.14389 5.22282 5.27140 5.30530 5.35341 5.44358 5.49650 5.55147 5.57032 5.61534 5.70191 5.82003 5.87400 5.89643 6.01335 6.35541 6.47229 6.65175 6.68738 6.81917 7.06474 7.40281 7.44987 7.51621 7.84226 8.21600 8.57517 8.90568 9.51320 10.99880 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.036004 B = 0.002587 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 777.510810 B =10820.254447 C =10935.916474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.044 3.956 3 H 0.049 0.951 4 C 0.069 3.931 5 O -0.387 6.387 6 C 0.063 3.937 7 C 0.014 3.986 8 N -0.532 5.532 9 C 0.052 3.948 10 C 0.064 3.936 11 N -0.695 5.695 12 C 0.069 3.931 13 C 0.010 3.990 14 H 0.099 0.901 15 C 0.255 3.745 16 N -0.480 5.480 17 C 0.032 3.968 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.062 3.938 21 N -0.892 5.892 22 Si 0.892 3.108 23 H -0.279 1.279 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.064 0.936 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.060 0.940 30 H 0.096 0.904 31 H 0.098 0.902 32 H 0.060 0.940 33 H 0.091 0.909 34 H 0.044 0.956 35 H 0.043 0.957 36 H 0.081 0.919 37 H 0.040 0.960 38 H 0.070 0.930 39 H 0.341 0.659 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.038 0.962 43 H 0.026 0.974 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.516 -0.432 -24.320 24.330 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.064 4.064 3 H 0.067 0.933 4 C -0.008 4.008 5 O -0.306 6.306 6 C -0.014 4.014 7 C -0.114 4.114 8 N -0.258 5.258 9 C -0.076 4.076 10 C -0.066 4.066 11 N -0.326 5.326 12 C -0.061 4.061 13 C -0.013 4.013 14 H 0.117 0.883 15 C -0.062 4.062 16 N -0.157 5.157 17 C -0.007 4.007 18 C -0.565 4.565 19 H 0.075 0.925 20 C -0.140 4.140 21 N -0.530 5.530 22 Si 0.719 3.281 23 H -0.205 1.205 24 H -0.211 1.211 25 H -0.199 1.199 26 H 0.083 0.917 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.078 0.922 30 H 0.114 0.886 31 H 0.116 0.884 32 H 0.078 0.922 33 H 0.109 0.891 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.099 0.901 37 H 0.058 0.942 38 H 0.088 0.912 39 H 0.158 0.842 40 H 0.069 0.931 41 H 0.094 0.906 42 H 0.056 0.944 43 H 0.044 0.956 44 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.870 0.907 -24.024 24.056 hybrid contribution -1.127 -0.007 1.130 1.596 sum -0.257 0.900 -22.894 22.913 Atomic orbital electron populations 1.21857 0.93397 1.02963 1.02296 1.22293 0.96449 0.96536 0.91155 0.93278 1.22713 0.80922 1.00350 0.96790 1.87981 1.20713 1.78618 1.43276 1.22687 0.98975 0.95700 0.83993 1.22856 0.88124 1.00620 0.99789 1.62195 1.08308 1.53377 1.01913 1.22158 1.00795 0.96270 0.88382 1.21853 1.00610 0.95664 0.88451 1.60436 1.21227 1.48842 1.02145 1.22051 1.01701 0.94385 0.87972 1.19222 0.97823 0.87096 0.97112 0.88297 1.28912 0.92784 0.93842 0.90642 1.81030 1.10645 1.12788 1.11207 1.19167 0.98495 0.93829 0.89213 1.21144 1.35522 1.06178 0.93632 0.92491 1.24958 0.95224 0.94850 0.98966 1.69937 1.42623 1.15139 1.25338 0.86587 0.79414 0.79746 0.82315 1.20465 1.21134 1.19852 0.91743 0.91898 0.91471 0.92203 0.88601 0.88431 0.92178 0.89065 0.93819 0.93821 0.90076 0.94208 0.91186 0.84159 0.93137 0.90558 0.94429 0.95555 0.92780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 8.92 37.16 0.33 -0.67 16 2 C 0.04 0.37 2.59 -67.60 -0.17 0.20 16 3 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 4 C 0.07 0.55 6.29 37.21 0.23 0.79 16 5 O -0.39 -3.88 10.83 -35.23 -0.38 -4.26 16 6 C 0.06 0.53 7.01 37.21 0.26 0.79 16 7 C 0.01 0.13 5.43 -3.71 -0.02 0.11 16 8 N -0.53 -4.97 4.54 -226.34 -1.03 -5.99 16 9 C 0.05 0.51 4.99 -3.83 -0.02 0.49 16 10 C 0.06 0.69 5.61 -3.83 -0.02 0.67 16 11 N -0.69 -8.76 6.20 -113.78 -0.71 -9.46 16 12 C 0.07 0.99 5.05 -3.82 -0.02 0.98 16 13 C 0.01 0.17 2.35 -93.41 -0.22 -0.05 16 14 H 0.10 1.64 8.14 -51.93 -0.42 1.22 16 15 C 0.26 5.33 13.67 -20.72 -0.28 5.04 16 16 N -0.48 -10.96 18.54 42.20 0.78 -10.18 16 17 C 0.03 0.72 4.42 -27.88 -0.12 0.60 16 18 C -0.53 -13.97 8.60 -34.44 -0.30 -14.27 16 19 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 20 C 0.06 1.71 5.46 -17.82 -0.10 1.61 16 21 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 22 Si 0.89 21.26 29.54 -169.99 -5.02 16.24 16 23 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 24 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 25 H -0.27 -6.57 7.11 56.52 0.40 -6.16 16 26 H 0.06 0.46 6.17 -51.93 -0.32 0.14 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.46 8.14 -51.92 -0.42 0.04 16 30 H 0.10 0.61 8.14 -51.93 -0.42 0.18 16 31 H 0.10 0.67 8.14 -51.93 -0.42 0.24 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.09 0.79 6.37 -51.93 -0.33 0.46 16 34 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.04 0.49 8.12 -51.93 -0.42 0.07 16 36 H 0.08 0.74 5.77 -51.93 -0.30 0.44 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.79 6.51 -51.93 -0.34 0.45 16 39 H 0.34 3.82 8.73 -39.29 -0.34 3.47 16 40 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 41 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 42 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 LS Contribution 356.22 15.07 5.37 5.37 Total: -1.00 -30.81 356.22 -8.20 -39.02 By element: Atomic # 1 Polarization: 5.24 SS G_CDS: -7.51 Total: -2.27 kcal Atomic # 6 Polarization: -3.27 SS G_CDS: -0.45 Total: -3.72 kcal Atomic # 7 Polarization: -50.17 SS G_CDS: -0.21 Total: -50.38 kcal Atomic # 8 Polarization: -3.88 SS G_CDS: -0.38 Total: -4.26 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.24 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.81 -8.20 -39.02 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572511522.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.569 kcal (2) G-P(sol) polarization free energy of solvation -30.813 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.203 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds