Wall clock time and date at job start Tue Mar 31 2020 05:52:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09002 * 109.50751 * 2 1 4 4 C 1.53103 * 109.50509 * 120.08609 * 2 1 3 5 5 O 1.43103 * 109.20778 * 176.78453 * 4 2 1 6 6 C 1.43016 * 113.76264 * 301.35437 * 5 4 2 7 7 C 1.53103 * 109.25809 * 58.67404 * 6 5 4 8 8 N 1.47015 * 109.25538 * 303.14858 * 7 6 5 9 9 C 1.46897 * 110.99783 * 182.38968 * 8 7 6 10 10 C 1.53005 * 109.47141 * 46.36774 * 9 8 7 11 11 N 1.46897 * 109.47141 * 179.97438 * 10 9 8 12 12 C 1.46906 * 110.99740 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.46965 * 179.97438 * 12 11 10 14 14 H 1.09002 * 109.47488 * 305.00142 * 13 12 11 15 15 C 1.47201 * 109.47225 * 65.00060 * 13 12 11 16 16 N 7.78247 * 96.52435 * 290.15797 * 2 1 3 17 17 C 1.53000 * 109.47286 * 185.00150 * 13 12 11 18 18 C 1.50701 * 109.47043 * 175.00425 * 17 13 12 19 19 H 1.07999 * 120.00297 * 359.97438 * 18 17 13 20 20 C 1.37885 * 119.99529 * 179.97438 * 18 17 13 21 21 N 1.31514 * 119.99547 * 179.97438 * 20 18 17 22 22 Si 1.86791 * 120.00216 * 359.97438 * 20 18 17 23 23 H 1.48500 * 109.47260 * 89.99943 * 22 20 18 24 24 H 1.48495 * 109.47326 * 210.00085 * 22 20 18 25 25 H 1.48503 * 109.47199 * 330.00328 * 22 20 18 26 26 H 1.09003 * 109.47597 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47602 * 300.00649 * 1 2 3 28 28 H 1.09005 * 109.47241 * 59.99880 * 1 2 3 29 29 H 1.09004 * 109.50456 * 296.76416 * 4 2 1 30 30 H 1.09008 * 109.50567 * 56.89202 * 4 2 1 31 31 H 1.08998 * 109.50869 * 298.73652 * 6 5 4 32 32 H 1.08997 * 109.50783 * 178.60937 * 6 5 4 33 33 H 1.08998 * 109.50706 * 183.21560 * 7 6 5 34 34 H 1.08997 * 109.53776 * 63.10401 * 7 6 5 35 35 H 1.09002 * 109.47014 * 166.36871 * 9 8 7 36 36 H 1.09002 * 109.47381 * 286.36647 * 9 8 7 37 37 H 1.09003 * 109.46790 * 300.00229 * 10 9 8 38 38 H 1.09002 * 109.47087 * 59.99693 * 10 9 8 39 39 H 1.00900 * 111.00136 * 303.95352 * 11 10 9 40 40 H 1.09000 * 109.47094 * 299.99856 * 12 11 10 41 41 H 1.08998 * 109.46716 * 60.00228 * 12 11 10 42 42 H 1.09008 * 109.46787 * 295.00099 * 17 13 12 43 43 H 1.08994 * 109.46994 * 54.99589 * 17 13 12 44 44 H 0.97002 * 119.99272 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8939 1.0274 0.0000 4 6 2.0412 -0.7235 1.2487 5 8 3.4702 -0.7857 1.2049 6 6 3.9827 -1.4564 0.0504 7 6 3.4903 -0.7400 -1.2099 8 7 2.0208 -0.6948 -1.1990 9 6 1.5046 -0.0642 -2.4212 10 6 2.2246 -0.6469 -3.6390 11 7 1.7079 -0.0168 -4.8612 12 6 2.3774 -0.5535 -6.0536 13 6 1.8136 0.1249 -7.3038 14 1 0.7301 0.0072 -7.3237 15 6 2.1512 1.5574 -7.2793 16 7 2.4142 2.6645 -7.2585 17 6 2.4196 -0.5206 -8.5516 18 6 1.7744 0.0623 -9.7824 19 1 1.0084 0.8173 -9.6845 20 6 2.1621 -0.3684 -11.0336 21 7 1.5987 0.1400 -12.1077 22 14 3.4874 -1.6737 -11.2029 23 1 2.8593 -3.0193 -11.2072 24 1 4.2253 -1.4679 -12.4750 25 1 4.4314 -1.5718 -10.0611 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8899 28 1 -0.3634 0.5139 -0.8900 29 1 1.7265 -0.1791 2.1391 30 1 1.6336 -1.7341 1.2763 31 1 3.6317 -2.4883 0.0432 32 1 5.0723 -1.4422 0.0750 33 1 3.8312 -1.2809 -2.0927 34 1 3.8856 0.2755 -1.2299 35 1 0.4349 -0.2562 -2.5052 36 1 1.6782 1.0110 -2.3766 37 1 3.2942 -0.4549 -3.5550 38 1 2.0509 -1.7221 -3.6837 39 1 0.7071 -0.1258 -4.9290 40 1 3.4481 -0.3607 -5.9868 41 1 2.2047 -1.6280 -6.1145 42 1 3.4919 -0.3263 -8.5768 43 1 2.2459 -1.5963 -8.5249 44 1 1.8712 -0.1633 -12.9879 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572511523.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:07 Heat of formation + Delta-G solvation = -19.516849 kcal Electronic energy + Delta-G solvation = -21748.251542 eV Core-core repulsion = 18507.456680 eV Total energy + Delta-G solvation = -3240.794862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.16772 -37.69648 -36.56130 -35.05989 -33.64445 -32.96413 -31.80126 -29.70088 -27.79880 -26.99808 -25.51299 -23.21318 -22.64025 -21.89091 -21.31322 -20.25724 -17.25144 -16.94235 -16.78539 -16.59700 -15.86672 -15.69883 -15.24103 -14.89522 -14.67550 -14.31685 -14.13119 -13.65521 -13.55785 -13.04059 -12.88743 -12.51309 -12.48071 -12.34834 -12.25746 -12.10449 -11.94932 -11.72369 -11.49405 -11.31127 -11.19373 -10.94585 -10.81825 -10.78319 -10.43437 -9.98670 -9.92401 -9.77038 -9.34966 -8.70143 -8.63922 -8.44999 -6.12651 -4.13438 3.23952 3.28858 3.33229 3.33855 3.52329 3.66973 3.74913 4.21717 4.36362 4.41820 4.56568 4.58327 4.76317 4.78494 4.85741 4.91507 5.01823 5.09600 5.19113 5.22106 5.27092 5.32933 5.37742 5.40316 5.49808 5.52286 5.55827 5.60335 5.75785 5.76397 5.85543 5.86269 6.17366 6.26069 6.59614 6.64219 6.78655 6.89025 6.95211 7.09681 7.35131 7.61445 8.38428 8.52380 8.90977 9.47082 11.00475 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.030267 B = 0.002807 C = 0.002695 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 924.873098 B = 9971.052340 C =10387.319167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 H 0.050 0.950 4 C 0.069 3.931 5 O -0.388 6.388 6 C 0.063 3.937 7 C 0.011 3.989 8 N -0.531 5.531 9 C 0.056 3.944 10 C 0.056 3.944 11 N -0.693 5.693 12 C 0.066 3.934 13 C 0.020 3.980 14 H 0.105 0.895 15 C 0.252 3.748 16 N -0.471 5.471 17 C -0.005 4.005 18 C -0.529 4.529 19 H 0.074 0.926 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.878 3.122 23 H -0.275 1.275 24 H -0.287 1.287 25 H -0.264 1.264 26 H 0.066 0.934 27 H 0.062 0.938 28 H 0.063 0.937 29 H 0.096 0.904 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.044 0.956 35 H 0.080 0.920 36 H 0.045 0.955 37 H 0.073 0.927 38 H 0.040 0.960 39 H 0.343 0.657 40 H 0.076 0.924 41 H 0.050 0.950 42 H 0.025 0.975 43 H 0.033 0.967 44 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.249 -6.902 26.166 27.062 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 H 0.068 0.932 4 C -0.008 4.008 5 O -0.306 6.306 6 C -0.014 4.014 7 C -0.118 4.118 8 N -0.258 5.258 9 C -0.072 4.072 10 C -0.073 4.073 11 N -0.325 5.325 12 C -0.064 4.064 13 C -0.002 4.002 14 H 0.123 0.877 15 C -0.065 4.065 16 N -0.148 5.148 17 C -0.044 4.044 18 C -0.566 4.566 19 H 0.092 0.908 20 C -0.132 4.132 21 N -0.535 5.535 22 Si 0.705 3.295 23 H -0.200 1.200 24 H -0.213 1.213 25 H -0.189 1.189 26 H 0.085 0.915 27 H 0.081 0.919 28 H 0.082 0.918 29 H 0.114 0.886 30 H 0.078 0.922 31 H 0.078 0.922 32 H 0.116 0.884 33 H 0.111 0.889 34 H 0.063 0.937 35 H 0.098 0.902 36 H 0.063 0.937 37 H 0.091 0.909 38 H 0.058 0.942 39 H 0.161 0.839 40 H 0.095 0.905 41 H 0.069 0.931 42 H 0.043 0.957 43 H 0.051 0.949 44 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 1.007 -5.087 26.207 26.716 hybrid contribution 0.246 -1.184 -0.768 1.433 sum 1.253 -6.271 25.439 26.230 Atomic orbital electron populations 1.21814 0.93335 1.02869 1.02365 1.22331 0.96515 0.96524 0.91072 0.93187 1.22738 0.80885 1.00341 0.96824 1.87996 1.20720 1.78539 1.43336 1.22695 0.98982 0.95658 0.84033 1.22911 0.88328 1.00695 0.99819 1.62311 1.08264 1.53257 1.01941 1.22113 0.99877 0.97119 0.88102 1.22037 0.99650 0.96564 0.89044 1.60435 1.09890 1.60601 1.01529 1.22082 0.99481 0.96892 0.87956 1.18954 1.02312 0.82808 0.96126 0.87718 1.28793 0.92455 0.94562 0.90738 1.81092 1.09795 1.12965 1.10924 1.19636 0.96921 0.96204 0.91625 1.21028 1.22741 1.23924 0.88940 0.90769 1.25000 0.96077 0.96288 0.95792 1.69908 1.42507 1.43007 0.98047 0.86809 0.82556 0.82208 0.77936 1.20045 1.21295 1.18862 0.91540 0.91910 0.91847 0.88555 0.92206 0.92230 0.88429 0.88868 0.93731 0.90198 0.93697 0.90908 0.94169 0.83887 0.90534 0.93146 0.95651 0.94925 0.92544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.98 8.89 37.16 0.33 -0.65 16 2 C 0.04 0.37 2.55 -67.60 -0.17 0.19 16 3 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 4 C 0.07 0.54 6.30 37.21 0.23 0.78 16 5 O -0.39 -3.81 10.83 -35.23 -0.38 -4.19 16 6 C 0.06 0.51 7.01 37.21 0.26 0.77 16 7 C 0.01 0.09 4.94 -3.71 -0.02 0.07 16 8 N -0.53 -4.78 4.69 -226.33 -1.06 -5.84 16 9 C 0.06 0.52 4.74 -3.82 -0.02 0.50 16 10 C 0.06 0.56 4.95 -3.82 -0.02 0.55 16 11 N -0.69 -8.22 6.20 -113.78 -0.71 -8.92 16 12 C 0.07 0.88 5.05 -3.82 -0.02 0.86 16 13 C 0.02 0.35 2.35 -93.41 -0.22 0.13 16 14 H 0.10 1.68 8.14 -51.93 -0.42 1.26 16 15 C 0.25 5.17 13.68 -20.69 -0.28 4.89 16 16 N -0.47 -10.73 18.55 42.24 0.78 -9.94 16 17 C 0.00 -0.10 3.49 -27.88 -0.10 -0.20 16 18 C -0.53 -14.14 9.15 -34.44 -0.32 -14.46 16 19 H 0.07 2.18 7.84 -52.49 -0.41 1.77 16 20 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 21 N -0.90 -26.99 13.96 55.43 0.77 -26.22 16 22 Si 0.88 20.51 27.47 -169.99 -4.67 15.84 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.26 -5.84 6.54 56.52 0.37 -5.47 16 26 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.06 0.45 6.61 -51.93 -0.34 0.11 16 29 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.06 0.45 8.14 -51.92 -0.42 0.02 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.09 0.74 6.05 -51.93 -0.31 0.43 16 34 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.71 6.87 -51.93 -0.36 0.35 16 36 H 0.04 0.49 8.08 -51.93 -0.42 0.07 16 37 H 0.07 0.75 6.28 -51.93 -0.33 0.43 16 38 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 39 H 0.34 3.63 8.73 -39.29 -0.34 3.29 16 40 H 0.08 1.05 8.14 -51.93 -0.42 0.62 16 41 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.03 0.55 7.20 -51.92 -0.37 0.17 16 43 H 0.03 0.64 7.57 -51.93 -0.39 0.24 16 44 H 0.26 7.45 8.31 -40.82 -0.34 7.12 16 LS Contribution 352.26 15.07 5.31 5.31 Total: -1.00 -31.98 352.26 -7.91 -39.89 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -7.52 Total: -1.23 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -0.43 Total: -4.70 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.21 Total: -50.92 kcal Atomic # 8 Polarization: -3.81 SS G_CDS: -0.38 Total: -4.19 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -4.67 Total: 15.84 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -31.98 -7.91 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572511523.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.371 kcal (2) G-P(sol) polarization free energy of solvation -31.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.906 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.888 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds