Wall clock time and date at job start Tue Mar 31 2020 05:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08998 * 109.50640 * 2 1 4 4 C 1.53106 * 109.53714 * 120.10494 * 2 1 3 5 5 O 1.43014 * 109.25404 * 176.80588 * 4 2 1 6 6 C 1.43013 * 113.74285 * 301.32693 * 5 4 2 7 7 C 1.53102 * 109.25675 * 58.66914 * 6 5 4 8 8 N 1.47012 * 109.50710 * 239.90683 * 2 1 3 9 9 C 1.46890 * 111.00097 * 57.63319 * 8 2 1 10 10 C 1.53004 * 109.47376 * 169.99836 * 9 8 2 11 11 N 1.46890 * 109.47376 * 179.97438 * 10 9 8 12 12 C 1.46903 * 111.00241 * 180.02562 * 11 10 9 13 13 C 1.52997 * 109.47311 * 180.02562 * 12 11 10 14 14 H 1.09001 * 109.47375 * 55.00046 * 13 12 11 15 15 C 1.47206 * 109.47080 * 295.00010 * 13 12 11 16 16 N 7.91772 * 73.65084 * 266.15712 * 2 1 3 17 17 C 1.52997 * 109.47232 * 174.99912 * 13 12 11 18 18 C 1.50699 * 109.47337 * 184.99945 * 17 13 12 19 19 H 1.08001 * 119.99707 * 359.97438 * 18 17 13 20 20 C 1.37875 * 120.00057 * 180.02562 * 18 17 13 21 21 N 1.31519 * 120.00040 * 359.97438 * 20 18 17 22 22 Si 1.86802 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48491 * 109.47586 * 59.99740 * 22 20 18 24 24 H 1.48503 * 109.47053 * 179.97438 * 22 20 18 25 25 H 1.48501 * 109.46986 * 299.98988 * 22 20 18 26 26 H 1.08999 * 109.47230 * 180.08655 * 1 2 3 27 27 H 1.08995 * 109.47588 * 300.09469 * 1 2 3 28 28 H 1.09001 * 109.46724 * 60.09216 * 1 2 3 29 29 H 1.09004 * 109.50579 * 296.73790 * 4 2 1 30 30 H 1.09000 * 109.51049 * 56.87309 * 4 2 1 31 31 H 1.08997 * 109.51038 * 178.60899 * 6 5 4 32 32 H 1.09005 * 109.50487 * 298.74105 * 6 5 4 33 33 H 1.09000 * 109.50608 * 183.21511 * 7 6 5 34 34 H 1.09000 * 109.50277 * 63.08852 * 7 6 5 35 35 H 1.09002 * 109.47212 * 49.99525 * 9 8 2 36 36 H 1.09001 * 109.46969 * 289.99590 * 9 8 2 37 37 H 1.09002 * 109.47205 * 59.99684 * 10 9 8 38 38 H 1.09001 * 109.46870 * 299.99813 * 10 9 8 39 39 H 1.00906 * 110.99915 * 303.95210 * 11 10 9 40 40 H 1.08994 * 109.46766 * 59.99709 * 12 11 10 41 41 H 1.09000 * 109.47050 * 299.99781 * 12 11 10 42 42 H 1.09004 * 109.47346 * 305.00019 * 17 13 12 43 43 H 1.09002 * 109.47196 * 64.99793 * 17 13 12 44 44 H 0.97001 * 119.99777 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8940 1.0274 0.0000 4 6 2.0420 -0.7237 1.2483 5 8 3.4702 -0.7856 1.2050 6 6 3.9828 -1.4564 0.0506 7 6 3.4903 -0.7402 -1.2097 8 7 2.0209 -0.6948 -1.1990 9 6 1.5047 -0.0644 -2.4212 10 6 2.2247 -0.6472 -3.6389 11 7 1.7081 -0.0172 -4.8612 12 6 2.3775 -0.5540 -6.0536 13 6 1.8146 0.1251 -7.3037 14 1 1.9076 1.2065 -7.2028 15 6 0.3953 -0.2329 -7.4596 16 7 -0.6988 -0.5092 -7.5805 17 6 2.5963 -0.3414 -8.5333 18 6 2.1246 0.4180 -9.7464 19 1 1.3448 1.1590 -9.6501 20 6 2.6876 0.1661 -10.9795 21 7 3.6369 -0.7366 -11.0969 22 14 2.1033 1.1080 -12.4831 23 1 2.3291 2.5609 -12.2758 24 1 2.8620 0.6551 -13.6767 25 1 0.6547 0.8569 -12.6924 26 1 -0.3634 -1.0276 0.0016 27 1 -0.3634 0.5153 0.8891 28 1 -0.3633 0.5124 -0.8908 29 1 1.7281 -0.1795 2.1390 30 1 1.6346 -1.7344 1.2759 31 1 5.0724 -1.4421 0.0752 32 1 3.6317 -2.4883 0.0435 33 1 3.8314 -1.2811 -2.0925 34 1 3.8856 0.2754 -1.2291 35 1 1.6783 1.0108 -2.3766 36 1 0.4351 -0.2565 -2.5051 37 1 2.0511 -1.7224 -3.6835 38 1 3.2943 -0.4551 -3.5549 39 1 0.7072 -0.1263 -4.9289 40 1 2.2049 -1.6284 -6.1143 41 1 3.4482 -0.3612 -5.9868 42 1 3.6595 -0.1565 -8.3797 43 1 2.4314 -1.4081 -8.6856 44 1 4.0333 -0.9136 -11.9644 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000572511524.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:09 Heat of formation + Delta-G solvation = -23.817075 kcal Electronic energy + Delta-G solvation = -21695.936406 eV Core-core repulsion = 18454.955072 eV Total energy + Delta-G solvation = -3240.981333 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.13810 -37.69102 -36.56046 -35.06196 -33.68979 -32.95359 -31.68282 -29.53561 -27.63509 -26.78833 -25.35382 -23.17952 -22.66970 -22.02719 -21.42740 -20.22043 -16.88907 -16.76625 -16.66019 -16.47068 -15.96228 -15.80330 -15.23131 -14.89664 -14.57712 -14.50342 -14.13033 -13.51165 -13.21326 -13.12744 -12.69375 -12.64050 -12.40453 -12.32533 -12.27762 -12.05013 -11.85718 -11.51808 -11.38371 -11.28183 -11.03347 -10.90727 -10.79025 -10.74259 -10.56095 -10.28240 -9.90602 -9.57085 -9.26526 -8.65769 -8.47137 -8.40151 -6.11155 -4.14510 3.30181 3.32780 3.34388 3.38183 3.54435 3.56254 3.60520 4.26936 4.40177 4.46484 4.60821 4.62327 4.77369 4.80531 4.90088 4.95069 5.06821 5.13476 5.22333 5.26786 5.30773 5.36825 5.44207 5.47091 5.54277 5.56482 5.62129 5.67287 5.79646 5.81522 5.89791 6.10619 6.31524 6.51110 6.64455 6.68227 6.82294 7.03630 7.35639 7.41362 7.50641 7.83599 8.21139 8.37154 8.89787 9.51013 10.99704 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.034485 B = 0.002661 C = 0.002527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 811.761175 B =10520.036544 C =11078.830374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.045 3.955 3 H 0.051 0.949 4 C 0.069 3.931 5 O -0.387 6.387 6 C 0.063 3.937 7 C 0.011 3.989 8 N -0.532 5.532 9 C 0.056 3.944 10 C 0.055 3.945 11 N -0.692 5.692 12 C 0.069 3.931 13 C 0.007 3.993 14 H 0.111 0.889 15 C 0.241 3.759 16 N -0.476 5.476 17 C 0.033 3.967 18 C -0.528 4.528 19 H 0.056 0.944 20 C 0.063 3.937 21 N -0.892 5.892 22 Si 0.892 3.108 23 H -0.275 1.275 24 H -0.286 1.286 25 H -0.277 1.277 26 H 0.065 0.935 27 H 0.062 0.938 28 H 0.062 0.938 29 H 0.096 0.904 30 H 0.059 0.941 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.094 0.906 34 H 0.045 0.955 35 H 0.046 0.954 36 H 0.077 0.923 37 H 0.038 0.962 38 H 0.076 0.924 39 H 0.338 0.662 40 H 0.036 0.964 41 H 0.091 0.909 42 H 0.040 0.960 43 H 0.024 0.976 44 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.331 -0.191 24.074 24.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.064 4.064 3 H 0.068 0.932 4 C -0.008 4.008 5 O -0.306 6.306 6 C -0.014 4.014 7 C -0.117 4.117 8 N -0.259 5.259 9 C -0.072 4.072 10 C -0.075 4.075 11 N -0.323 5.323 12 C -0.061 4.061 13 C -0.015 4.015 14 H 0.129 0.871 15 C -0.076 4.076 16 N -0.153 5.153 17 C -0.006 4.006 18 C -0.566 4.566 19 H 0.074 0.926 20 C -0.140 4.140 21 N -0.530 5.530 22 Si 0.720 3.280 23 H -0.200 1.200 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.084 0.916 27 H 0.081 0.919 28 H 0.081 0.919 29 H 0.114 0.886 30 H 0.077 0.923 31 H 0.116 0.884 32 H 0.077 0.923 33 H 0.112 0.888 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.096 0.904 37 H 0.056 0.944 38 H 0.095 0.905 39 H 0.156 0.844 40 H 0.054 0.946 41 H 0.109 0.891 42 H 0.058 0.942 43 H 0.043 0.957 44 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -0.835 -0.552 23.972 23.993 hybrid contribution -0.166 0.448 -1.362 1.444 sum -1.001 -0.104 22.609 22.632 Atomic orbital electron populations 1.21816 0.93411 1.02880 1.02324 1.22327 0.96456 0.96510 0.91092 0.93154 1.22718 0.80931 1.00334 0.96809 1.87979 1.20676 1.78534 1.43380 1.22705 0.99000 0.95678 0.84034 1.22915 0.88246 1.00714 0.99849 1.62292 1.08334 1.53317 1.01914 1.22111 0.99836 0.97104 0.88135 1.22056 0.99746 0.96617 0.89052 1.60539 1.09716 1.60332 1.01731 1.22069 0.99695 0.96665 0.87662 1.19334 0.82675 1.02362 0.97176 0.87133 1.29268 0.94870 0.92127 0.91290 1.80987 1.13502 1.10354 1.10450 1.19157 0.95272 0.97302 0.88847 1.21107 1.20891 1.22001 0.92576 0.92550 1.24954 0.94845 0.95134 0.99027 1.69929 1.25784 1.32580 1.24750 0.86644 0.78908 0.80353 0.82121 1.20005 1.21172 1.20264 0.91579 0.91915 0.91869 0.88585 0.92251 0.88370 0.92260 0.88785 0.93650 0.93579 0.90420 0.94365 0.90540 0.84422 0.94580 0.89067 0.94208 0.95741 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 8.90 37.16 0.33 -0.73 16 2 C 0.04 0.38 2.55 -67.60 -0.17 0.21 16 3 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 4 C 0.07 0.56 6.30 37.21 0.23 0.79 16 5 O -0.39 -3.85 10.83 -35.23 -0.38 -4.23 16 6 C 0.06 0.52 7.01 37.21 0.26 0.78 16 7 C 0.01 0.09 4.94 -3.71 -0.02 0.08 16 8 N -0.53 -5.02 4.69 -226.34 -1.06 -6.08 16 9 C 0.06 0.56 4.74 -3.83 -0.02 0.54 16 10 C 0.05 0.59 4.95 -3.83 -0.02 0.57 16 11 N -0.69 -8.90 6.50 -113.78 -0.74 -9.64 16 12 C 0.07 1.00 5.12 -3.82 -0.02 0.98 16 13 C 0.01 0.12 2.42 -93.41 -0.23 -0.11 16 14 H 0.11 1.93 8.14 -51.93 -0.42 1.51 16 15 C 0.24 4.83 12.97 -20.80 -0.27 4.56 16 16 N -0.48 -10.30 18.53 42.11 0.78 -9.52 16 17 C 0.03 0.75 4.42 -27.89 -0.12 0.63 16 18 C -0.53 -14.01 8.60 -34.44 -0.30 -14.30 16 19 H 0.06 1.49 7.59 -52.49 -0.40 1.09 16 20 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 21 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 22 Si 0.89 21.28 29.54 -169.99 -5.02 16.26 16 23 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 24 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 25 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.06 0.49 6.60 -51.93 -0.34 0.15 16 29 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 32 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.09 0.77 6.05 -51.93 -0.31 0.46 16 34 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.08 0.78 6.86 -51.93 -0.36 0.42 16 37 H 0.04 0.43 8.14 -51.93 -0.42 0.01 16 38 H 0.08 0.79 6.28 -51.93 -0.33 0.47 16 39 H 0.34 4.52 7.81 -39.29 -0.31 4.21 16 40 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.09 1.24 8.14 -51.93 -0.42 0.81 16 42 H 0.04 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 354.63 15.07 5.34 5.34 Total: -1.00 -29.90 354.63 -8.29 -38.19 By element: Atomic # 1 Polarization: 6.30 SS G_CDS: -7.52 Total: -1.22 kcal Atomic # 6 Polarization: -3.94 SS G_CDS: -0.43 Total: -4.38 kcal Atomic # 7 Polarization: -49.69 SS G_CDS: -0.28 Total: -49.97 kcal Atomic # 8 Polarization: -3.85 SS G_CDS: -0.38 Total: -4.23 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -29.90 -8.29 -38.19 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000572511524.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.378 kcal (2) G-P(sol) polarization free energy of solvation -29.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.195 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds