Wall clock time and date at job start Tue Mar 31 2020 05:32:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46874 * 2 1 4 4 C 1.53007 * 109.46971 * 240.00683 * 2 1 3 5 5 C 1.50701 * 109.47014 * 59.99470 * 4 2 1 6 6 H 1.07994 * 120.00476 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99410 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00186 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99732 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46706 * 90.00275 * 9 7 5 11 11 H 1.48496 * 109.46990 * 210.00063 * 9 7 5 12 12 H 1.48496 * 109.46821 * 330.00279 * 9 7 5 13 13 C 1.52996 * 109.47334 * 120.00489 * 2 1 3 14 14 N 1.46901 * 109.47034 * 174.96494 * 13 2 1 15 15 C 1.47961 * 111.00052 * 176.20946 * 14 13 2 16 16 C 1.53929 * 86.18263 * 222.41700 * 15 14 13 17 17 N 1.46499 * 113.73490 * 138.07653 * 16 15 14 18 18 C 1.47052 * 125.40830 * 119.97418 * 17 16 15 19 19 C 1.54108 * 103.86482 * 180.02562 * 18 17 16 20 20 N 1.47057 * 103.85858 * 359.77441 * 19 18 17 21 21 C 1.33947 * 125.41128 * 299.97950 * 17 16 15 22 22 O 1.21583 * 123.04246 * 359.97438 * 21 17 16 23 23 C 1.47965 * 111.00061 * 76.85157 * 14 13 2 24 24 H 1.09002 * 109.46982 * 294.18394 * 1 2 3 25 25 H 1.08994 * 109.47371 * 54.18644 * 1 2 3 26 26 H 1.08997 * 109.46871 * 174.18687 * 1 2 3 27 27 H 1.09000 * 109.46558 * 188.66255 * 3 2 1 28 28 H 1.08994 * 109.47038 * 308.66525 * 3 2 1 29 29 H 1.09000 * 109.46623 * 68.66489 * 3 2 1 30 30 H 1.08994 * 109.46878 * 180.02562 * 4 2 1 31 31 H 1.09007 * 109.46618 * 299.99779 * 4 2 1 32 32 H 0.97000 * 119.99568 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47363 * 54.96425 * 13 2 1 34 34 H 1.09000 * 109.46863 * 294.96168 * 13 2 1 35 35 H 1.08999 * 113.75579 * 108.09618 * 15 14 13 36 36 H 1.09001 * 113.75592 * 336.73938 * 15 14 13 37 37 H 1.08995 * 113.73854 * 269.25882 * 16 15 14 38 38 H 1.09005 * 110.55086 * 298.59633 * 18 17 16 39 39 H 1.09001 * 110.54983 * 61.26295 * 18 17 16 40 40 H 1.09002 * 110.54965 * 118.59463 * 19 18 17 41 41 H 1.08995 * 110.54861 * 241.26415 * 19 18 17 42 42 H 0.96996 * 125.40928 * 180.23715 * 20 19 18 43 43 H 1.09000 * 113.75784 * 23.26593 * 23 14 13 44 44 H 1.08999 * 113.75983 * 251.90291 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5376 -0.0106 -2.4798 6 1 0.9170 0.8676 -2.3806 7 6 1.8711 -0.4813 -3.7321 8 7 2.6273 -1.5506 -3.8528 9 14 1.2489 0.3997 -5.2572 10 1 2.2272 1.4415 -5.6607 11 1 1.0843 -0.5791 -6.3617 12 1 -0.0593 1.0371 -4.9615 13 6 2.0401 -0.7213 1.2491 14 7 3.5041 -0.8274 1.1898 15 6 4.0418 -1.4397 2.4248 16 6 5.1422 -0.3656 2.3554 17 7 5.4685 0.2291 3.6539 18 6 6.7895 0.1945 4.2991 19 6 6.5744 0.9555 5.6218 20 7 5.1564 1.3428 5.5789 21 6 4.6109 0.8906 4.4421 22 8 3.4442 1.0687 4.1499 23 6 4.1434 0.4634 1.5278 24 1 -0.3633 0.4210 0.9375 25 1 -0.3634 0.6013 -0.8333 26 1 -0.3633 -1.0224 -0.1041 27 1 3.1190 1.4464 -0.1548 28 1 1.5558 1.9991 -0.8024 29 1 1.8086 1.9097 0.9573 30 1 3.1300 -0.7215 -1.2491 31 1 1.6767 -1.7489 -1.2494 32 1 2.8622 -1.8814 -4.7339 33 1 1.6050 -1.7196 1.2953 34 1 1.7523 -0.1581 2.1368 35 1 4.4107 -2.4560 2.2864 36 1 3.3833 -1.3388 3.2876 37 1 6.0249 -0.6771 1.7970 38 1 7.0929 -0.8340 4.4948 39 1 7.5309 0.6999 3.6802 40 1 6.7713 0.3048 6.4739 41 1 7.2103 1.8398 5.6622 42 1 4.6898 1.8443 6.2656 43 1 3.5148 1.1209 2.1283 44 1 4.5936 0.9677 0.6728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000573868632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:24 Heat of formation + Delta-G solvation = 23.748238 kcal Electronic energy + Delta-G solvation = -23340.039092 eV Core-core repulsion = 20101.120346 eV Total energy + Delta-G solvation = -3238.918747 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.37776 -39.32999 -36.40231 -36.09840 -33.32618 -32.14174 -29.32524 -28.23019 -27.01717 -26.75788 -25.12651 -24.20051 -23.21181 -22.64105 -20.95662 -19.18238 -18.01298 -17.61301 -16.73147 -16.18901 -15.83733 -15.54311 -14.94824 -14.56362 -14.21665 -14.09728 -13.85574 -13.40304 -13.11879 -12.83102 -12.62823 -12.50872 -12.30348 -12.11833 -11.82502 -11.69391 -11.18315 -11.10854 -10.85032 -10.65788 -10.49879 -10.26719 -10.13415 -10.02167 -9.77490 -9.47297 -9.39141 -8.83410 -8.60848 -8.60540 -8.21150 -8.05413 -5.79792 -3.78940 2.42426 3.04899 3.41663 3.47822 3.51174 3.68620 4.11679 4.40769 4.49324 4.60987 4.73986 4.86489 5.03288 5.15083 5.37969 5.39418 5.51396 5.55258 5.64129 5.89331 5.89621 5.95752 6.17965 6.19560 6.23959 6.37278 6.40894 6.54219 6.66781 6.74906 6.87480 6.89882 6.91492 6.98463 7.20238 7.35043 7.41617 7.45951 7.67960 7.96263 8.17168 8.31787 8.51364 8.68656 9.28642 9.82273 11.31393 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031009 B = 0.003970 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.751704 B = 7050.816150 C = 7332.814427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.058 4.058 3 C -0.130 4.130 4 C 0.046 3.954 5 C -0.507 4.507 6 H 0.054 0.946 7 C 0.055 3.945 8 N -0.896 5.896 9 Si 0.882 3.118 10 H -0.283 1.283 11 H -0.289 1.289 12 H -0.276 1.276 13 C 0.040 3.960 14 N -0.454 5.454 15 C -0.011 4.011 16 C 0.143 3.857 17 N -0.623 5.623 18 C 0.089 3.911 19 C 0.093 3.907 20 N -0.747 5.747 21 C 0.698 3.302 22 O -0.577 6.577 23 C -0.007 4.007 24 H 0.027 0.973 25 H 0.061 0.939 26 H 0.045 0.955 27 H 0.056 0.944 28 H 0.054 0.946 29 H 0.026 0.974 30 H 0.032 0.968 31 H 0.008 0.992 32 H 0.256 0.744 33 H 0.064 0.936 34 H 0.035 0.965 35 H 0.087 0.913 36 H 0.071 0.929 37 H 0.121 0.879 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.080 0.920 42 H 0.427 0.573 43 H 0.102 0.898 44 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.598 3.557 20.415 23.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.187 4.187 4 C 0.009 3.991 5 C -0.545 4.545 6 H 0.072 0.928 7 C -0.145 4.145 8 N -0.536 5.536 9 Si 0.711 3.289 10 H -0.210 1.210 11 H -0.215 1.215 12 H -0.201 1.201 13 C -0.088 4.088 14 N -0.176 5.176 15 C -0.142 4.142 16 C 0.040 3.960 17 N -0.361 5.361 18 C -0.035 4.035 19 C -0.032 4.032 20 N -0.410 5.410 21 C 0.398 3.602 22 O -0.455 6.455 23 C -0.136 4.136 24 H 0.046 0.954 25 H 0.080 0.920 26 H 0.064 0.936 27 H 0.074 0.926 28 H 0.073 0.927 29 H 0.045 0.955 30 H 0.050 0.950 31 H 0.027 0.973 32 H 0.066 0.934 33 H 0.082 0.918 34 H 0.053 0.947 35 H 0.105 0.895 36 H 0.089 0.911 37 H 0.139 0.861 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.098 0.902 42 H 0.268 0.732 43 H 0.120 0.880 44 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 10.159 3.136 19.317 22.049 hybrid contribution -0.587 0.928 0.190 1.114 sum 9.572 4.064 19.506 22.105 Atomic orbital electron populations 1.21715 0.95921 1.01076 0.99555 1.20584 0.94211 0.95139 0.95878 1.21949 1.01369 0.96398 0.98968 1.19020 0.97172 0.94150 0.88796 1.21378 1.30334 1.11679 0.91133 0.92799 1.24985 0.95622 0.95151 0.98752 1.69989 1.37544 1.23226 1.22851 0.86753 0.79171 0.79455 0.83539 1.20959 1.21502 1.20113 1.22700 0.88010 1.00195 0.97916 1.68603 1.08199 1.10183 1.30653 1.24384 0.96498 0.99008 0.94276 1.23110 0.98125 0.94512 0.80204 1.47324 1.10033 1.58360 1.20411 1.22402 0.86923 1.01406 0.92767 1.22300 0.83421 0.99580 0.97909 1.45180 1.11665 1.61447 1.22661 1.15954 0.84785 0.78750 0.80683 1.90950 1.15151 1.63872 1.75491 1.24706 0.96061 0.94773 0.98095 0.95365 0.92028 0.93597 0.92563 0.92708 0.95485 0.95002 0.97337 0.93429 0.91759 0.94676 0.89514 0.91115 0.86115 0.90054 0.89966 0.90208 0.90177 0.73169 0.88038 0.89222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.60 8.10 37.16 0.30 -2.30 16 2 C -0.06 -1.27 0.61 -154.50 -0.09 -1.36 16 3 C -0.13 -2.72 6.76 37.16 0.25 -2.47 16 4 C 0.05 1.22 3.82 -27.88 -0.11 1.11 16 5 C -0.51 -14.53 7.81 -34.44 -0.27 -14.80 16 6 H 0.05 1.51 5.73 -52.49 -0.30 1.21 16 7 C 0.05 1.61 5.46 -17.82 -0.10 1.52 16 8 N -0.90 -27.69 13.29 55.43 0.74 -26.96 16 9 Si 0.88 22.35 29.54 -169.99 -5.02 17.33 16 10 H -0.28 -7.09 7.11 56.52 0.40 -6.69 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 13 C 0.04 0.80 3.91 -3.83 -0.01 0.79 16 14 N -0.45 -8.42 5.24 -238.45 -1.25 -9.67 16 15 C -0.01 -0.17 7.50 -2.77 -0.02 -0.19 16 16 C 0.14 1.91 4.87 -69.63 -0.34 1.58 16 17 N -0.62 -7.15 3.17 -172.54 -0.55 -7.69 16 18 C 0.09 0.59 7.68 -3.16 -0.02 0.57 16 19 C 0.09 0.49 8.06 -3.16 -0.03 0.46 16 20 N -0.75 -6.62 6.37 -64.70 -0.41 -7.04 16 21 C 0.70 9.30 8.10 -88.39 -0.72 8.59 16 22 O -0.58 -10.24 14.52 5.29 0.08 -10.17 16 23 C -0.01 -0.12 4.97 -2.76 -0.01 -0.14 16 24 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.06 1.34 6.80 -51.93 -0.35 0.99 16 26 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.06 1.18 5.29 -51.93 -0.27 0.90 16 28 H 0.05 1.19 6.89 -51.93 -0.36 0.84 16 29 H 0.03 0.52 7.71 -51.93 -0.40 0.12 16 30 H 0.03 0.91 7.47 -51.93 -0.39 0.53 16 31 H 0.01 0.24 8.14 -51.92 -0.42 -0.18 16 32 H 0.26 7.51 8.31 -40.82 -0.34 7.17 16 33 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 34 H 0.03 0.70 7.66 -51.93 -0.40 0.30 16 35 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 36 H 0.07 1.15 7.15 -51.93 -0.37 0.78 16 37 H 0.12 1.40 8.14 -51.93 -0.42 0.97 16 38 H 0.08 0.42 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 40 H 0.08 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.43 3.09 8.96 -40.82 -0.37 2.73 16 43 H 0.10 1.89 4.44 -51.93 -0.23 1.66 16 44 H 0.09 1.55 6.85 -51.93 -0.36 1.19 16 LS Contribution 335.79 15.07 5.06 5.06 Total: -1.00 -34.96 335.79 -9.68 -44.64 By element: Atomic # 1 Polarization: 8.32 SS G_CDS: -7.16 Total: 1.16 kcal Atomic # 6 Polarization: -5.49 SS G_CDS: -1.17 Total: -6.66 kcal Atomic # 7 Polarization: -49.89 SS G_CDS: -1.47 Total: -51.36 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.08 Total: -10.17 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -34.96 -9.68 -44.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573868632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.389 kcal (2) G-P(sol) polarization free energy of solvation -34.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.641 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds