Wall clock time and date at job start Tue Mar 31 2020 05:32:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53006 * 109.46874 * 2 1 4 4 C 1.53007 * 109.46971 * 240.00683 * 2 1 3 5 5 C 1.50701 * 109.47014 * 59.99470 * 4 2 1 6 6 H 1.07994 * 120.00476 * 0.02562 * 5 4 2 7 7 C 1.37881 * 119.99410 * 179.97438 * 5 4 2 8 8 N 1.31515 * 120.00186 * 0.02562 * 7 5 4 9 9 Si 1.86804 * 119.99732 * 180.02562 * 7 5 4 10 10 H 1.48496 * 109.46706 * 90.00275 * 9 7 5 11 11 H 1.48496 * 109.46990 * 210.00063 * 9 7 5 12 12 H 1.48496 * 109.46821 * 330.00279 * 9 7 5 13 13 C 1.52996 * 109.47334 * 120.00489 * 2 1 3 14 14 N 1.46901 * 109.47034 * 174.96494 * 13 2 1 15 15 C 1.47961 * 111.00052 * 176.20946 * 14 13 2 16 16 C 1.53929 * 86.18263 * 222.41700 * 15 14 13 17 17 N 1.46499 * 113.73490 * 138.07653 * 16 15 14 18 18 C 1.47052 * 125.40830 * 119.97418 * 17 16 15 19 19 C 1.54108 * 103.86482 * 180.02562 * 18 17 16 20 20 N 1.47057 * 103.85858 * 359.77441 * 19 18 17 21 21 C 1.33947 * 125.41128 * 299.97950 * 17 16 15 22 22 O 1.21583 * 123.04246 * 359.97438 * 21 17 16 23 23 C 1.47965 * 111.00061 * 76.85157 * 14 13 2 24 24 H 1.09002 * 109.46982 * 294.18394 * 1 2 3 25 25 H 1.08994 * 109.47371 * 54.18644 * 1 2 3 26 26 H 1.08997 * 109.46871 * 174.18687 * 1 2 3 27 27 H 1.09000 * 109.46558 * 188.66255 * 3 2 1 28 28 H 1.08994 * 109.47038 * 308.66525 * 3 2 1 29 29 H 1.09000 * 109.46623 * 68.66489 * 3 2 1 30 30 H 1.08994 * 109.46878 * 180.02562 * 4 2 1 31 31 H 1.09007 * 109.46618 * 299.99779 * 4 2 1 32 32 H 0.97000 * 119.99568 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.47363 * 54.96425 * 13 2 1 34 34 H 1.09000 * 109.46863 * 294.96168 * 13 2 1 35 35 H 1.08999 * 113.75579 * 108.09618 * 15 14 13 36 36 H 1.09001 * 113.75592 * 336.73938 * 15 14 13 37 37 H 1.08995 * 113.73854 * 269.25882 * 16 15 14 38 38 H 1.09005 * 110.55086 * 298.59633 * 18 17 16 39 39 H 1.09001 * 110.54983 * 61.26295 * 18 17 16 40 40 H 1.09002 * 110.54965 * 118.59463 * 19 18 17 41 41 H 1.08995 * 110.54861 * 241.26415 * 19 18 17 42 42 H 0.96996 * 125.40928 * 180.23715 * 20 19 18 43 43 H 1.09000 * 113.75784 * 23.26593 * 23 14 13 44 44 H 1.08999 * 113.75983 * 251.90291 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7211 -1.2494 5 6 1.5376 -0.0106 -2.4798 6 1 0.9170 0.8676 -2.3806 7 6 1.8711 -0.4813 -3.7321 8 7 2.6273 -1.5506 -3.8528 9 14 1.2489 0.3997 -5.2572 10 1 2.2272 1.4415 -5.6607 11 1 1.0843 -0.5791 -6.3617 12 1 -0.0593 1.0371 -4.9615 13 6 2.0401 -0.7213 1.2491 14 7 3.5041 -0.8274 1.1898 15 6 4.0418 -1.4397 2.4248 16 6 5.1422 -0.3656 2.3554 17 7 5.4685 0.2291 3.6539 18 6 6.7895 0.1945 4.2991 19 6 6.5744 0.9555 5.6218 20 7 5.1564 1.3428 5.5789 21 6 4.6109 0.8906 4.4421 22 8 3.4442 1.0687 4.1499 23 6 4.1434 0.4634 1.5278 24 1 -0.3633 0.4210 0.9375 25 1 -0.3634 0.6013 -0.8333 26 1 -0.3633 -1.0224 -0.1041 27 1 3.1190 1.4464 -0.1548 28 1 1.5558 1.9991 -0.8024 29 1 1.8086 1.9097 0.9573 30 1 3.1300 -0.7215 -1.2491 31 1 1.6767 -1.7489 -1.2494 32 1 2.8622 -1.8814 -4.7339 33 1 1.6050 -1.7196 1.2953 34 1 1.7523 -0.1581 2.1368 35 1 4.4107 -2.4560 2.2864 36 1 3.3833 -1.3388 3.2876 37 1 6.0249 -0.6771 1.7970 38 1 7.0929 -0.8340 4.4948 39 1 7.5309 0.6999 3.6802 40 1 6.7713 0.3048 6.4739 41 1 7.2103 1.8398 5.6622 42 1 4.6898 1.8443 6.2656 43 1 3.5148 1.1209 2.1283 44 1 4.5936 0.9677 0.6728 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000573868632.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:23 Heat of formation + Delta-G solvation = -2.769847 kcal Electronic energy + Delta-G solvation = -23341.189003 eV Core-core repulsion = 20101.120346 eV Total energy + Delta-G solvation = -3240.068657 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.33317 -40.58804 -37.79212 -37.36315 -34.61143 -33.99770 -30.33850 -29.37605 -28.95643 -28.44256 -26.55169 -25.67576 -24.61095 -23.79513 -22.14041 -20.33678 -19.49963 -18.67584 -18.29308 -17.44811 -17.10822 -16.77345 -16.50951 -15.85720 -15.77371 -15.08181 -14.93528 -14.82514 -14.53652 -14.24142 -14.07215 -13.69256 -13.63774 -13.49800 -13.16416 -12.99161 -12.90880 -12.75084 -12.62256 -12.44411 -12.21676 -12.11623 -11.84159 -11.64079 -11.30312 -11.05635 -10.78156 -10.62325 -10.42889 -10.26520 -9.57803 -9.41080 -8.06531 -6.13410 1.41177 1.42069 1.52525 1.59166 2.08727 2.47347 2.99200 3.17508 3.26112 3.50477 3.62993 3.83208 4.02772 4.15198 4.21585 4.26086 4.40125 4.44097 4.58128 4.64198 4.70443 4.73466 4.75338 4.81444 4.85402 4.87508 4.95365 5.02321 5.11948 5.15975 5.27739 5.44977 5.48399 5.54230 5.56367 5.72354 5.76906 5.96972 6.07674 6.16828 6.23139 6.44692 6.59860 7.03193 7.52525 7.60451 9.05236 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.031009 B = 0.003970 C = 0.003818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.751704 B = 7050.816150 C = 7332.814427 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.058 4.058 3 C -0.118 4.118 4 C 0.063 3.937 5 C -0.519 4.519 6 H 0.058 0.942 7 C -0.001 4.001 8 N -0.933 5.933 9 Si 0.952 3.048 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.267 1.267 13 C 0.053 3.947 14 N -0.481 5.481 15 C -0.006 4.006 16 C 0.165 3.835 17 N -0.626 5.626 18 C 0.082 3.918 19 C 0.094 3.906 20 N -0.738 5.738 21 C 0.684 3.316 22 O -0.632 6.632 23 C -0.009 4.009 24 H 0.053 0.947 25 H 0.050 0.950 26 H 0.040 0.960 27 H 0.051 0.949 28 H 0.043 0.957 29 H 0.041 0.959 30 H 0.005 0.995 31 H -0.027 1.027 32 H 0.258 0.742 33 H 0.057 0.943 34 H 0.034 0.966 35 H 0.101 0.899 36 H 0.058 0.942 37 H 0.145 0.855 38 H 0.101 0.899 39 H 0.099 0.901 40 H 0.106 0.894 41 H 0.104 0.896 42 H 0.433 0.567 43 H 0.085 0.915 44 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.038 4.386 21.577 25.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.058 4.058 3 C -0.175 4.175 4 C 0.026 3.974 5 C -0.557 4.557 6 H 0.076 0.924 7 C -0.198 4.198 8 N -0.575 5.575 9 Si 0.778 3.222 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.191 1.191 13 C -0.076 4.076 14 N -0.203 5.203 15 C -0.136 4.136 16 C 0.061 3.939 17 N -0.363 5.363 18 C -0.040 4.040 19 C -0.030 4.030 20 N -0.400 5.400 21 C 0.384 3.616 22 O -0.513 6.513 23 C -0.138 4.138 24 H 0.072 0.928 25 H 0.069 0.931 26 H 0.059 0.941 27 H 0.070 0.930 28 H 0.062 0.938 29 H 0.060 0.940 30 H 0.024 0.976 31 H -0.009 1.009 32 H 0.067 0.933 33 H 0.075 0.925 34 H 0.052 0.948 35 H 0.119 0.881 36 H 0.076 0.924 37 H 0.163 0.837 38 H 0.119 0.881 39 H 0.118 0.882 40 H 0.124 0.876 41 H 0.122 0.878 42 H 0.276 0.724 43 H 0.103 0.897 44 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 11.655 3.980 20.533 23.943 hybrid contribution -0.970 0.651 -0.098 1.172 sum 10.685 4.631 20.435 23.520 Atomic orbital electron populations 1.21650 0.94957 1.00781 1.00431 1.20516 0.95085 0.95465 0.94740 1.21810 1.00898 0.95509 0.99262 1.18758 0.95278 0.92580 0.90816 1.21715 1.30165 1.11790 0.92043 0.92384 1.25856 0.95798 0.95903 1.02219 1.70130 1.38816 1.24802 1.23738 0.85640 0.78962 0.78317 0.79277 1.20073 1.21108 1.19113 1.22467 0.89344 0.99304 0.96466 1.68547 1.07143 1.11709 1.32934 1.24356 0.96775 1.00255 0.92263 1.22816 0.97885 0.92261 0.80964 1.47260 1.11846 1.57621 1.19587 1.22794 0.84653 1.03269 0.93248 1.22620 0.81291 1.00982 0.98062 1.45183 1.13247 1.60376 1.21221 1.16324 0.84360 0.79036 0.81839 1.90901 1.17633 1.65906 1.76901 1.24565 0.96981 0.94145 0.98147 0.92806 0.93130 0.94085 0.93003 0.93778 0.94004 0.97647 1.00864 0.93298 0.92455 0.94788 0.88054 0.92400 0.83717 0.88067 0.88231 0.87609 0.87759 0.72425 0.89700 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.05 8.10 71.98 0.58 -4.47 16 2 C -0.06 -2.60 0.61 -52.18 -0.03 -2.63 16 3 C -0.12 -5.01 6.76 71.98 0.49 -4.52 16 4 C 0.06 3.48 3.82 29.85 0.11 3.59 16 5 C -0.52 -30.28 7.81 25.60 0.20 -30.08 16 6 H 0.06 3.28 5.73 -2.91 -0.02 3.26 16 7 C 0.00 -0.06 5.46 84.66 0.46 0.40 16 8 N -0.93 -58.82 13.29 21.45 0.28 -58.53 16 9 Si 0.95 46.10 29.54 68.60 2.03 48.13 16 10 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 11 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 12 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 13 C 0.05 2.16 3.91 86.30 0.34 2.50 16 14 N -0.48 -18.22 5.24 -908.32 -4.76 -22.98 16 15 C -0.01 -0.19 7.50 86.40 0.65 0.45 16 16 C 0.16 4.22 4.87 46.56 0.23 4.45 16 17 N -0.63 -13.22 3.17 -818.51 -2.59 -15.82 16 18 C 0.08 0.80 7.68 86.65 0.67 1.47 16 19 C 0.09 0.62 8.06 86.65 0.70 1.32 16 20 N -0.74 -11.56 6.37 -477.33 -3.04 -14.61 16 21 C 0.68 17.60 8.10 179.57 1.46 19.06 16 22 O -0.63 -22.75 14.52 -3.98 -0.06 -22.81 16 23 C -0.01 -0.31 4.97 86.41 0.43 0.12 16 24 H 0.05 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.05 2.20 6.80 -2.39 -0.02 2.18 16 26 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 27 H 0.05 2.23 5.29 -2.39 -0.01 2.21 16 28 H 0.04 1.93 6.89 -2.39 -0.02 1.91 16 29 H 0.04 1.63 7.71 -2.39 -0.02 1.61 16 30 H 0.01 0.31 7.47 -2.39 -0.02 0.29 16 31 H -0.03 -1.67 8.14 -2.38 -0.02 -1.69 16 32 H 0.26 15.36 8.31 -92.71 -0.77 14.59 16 33 H 0.06 2.36 8.14 -2.39 -0.02 2.34 16 34 H 0.03 1.39 7.66 -2.39 -0.02 1.37 16 35 H 0.10 2.71 8.14 -2.39 -0.02 2.69 16 36 H 0.06 1.91 7.15 -2.39 -0.02 1.89 16 37 H 0.15 3.02 8.14 -2.39 -0.02 3.00 16 38 H 0.10 0.63 8.14 -2.38 -0.02 0.61 16 39 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 40 H 0.11 0.23 8.14 -2.39 -0.02 0.21 16 41 H 0.10 0.26 8.14 -2.39 -0.02 0.24 16 42 H 0.43 5.56 8.96 -92.71 -0.83 4.73 16 43 H 0.09 3.24 4.44 -2.39 -0.01 3.23 16 44 H 0.08 2.79 6.85 -2.39 -0.02 2.77 16 Total: -1.00 -78.26 335.79 -1.70 -79.96 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: 0.16 Total: 14.99 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 6.28 Total: -8.34 kcal Atomic # 7 Polarization: -101.83 SS G_CDS: -10.11 Total: -111.93 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.06 Total: -22.81 kcal Atomic # 14 Polarization: 46.10 SS G_CDS: 2.03 Total: 48.13 kcal Total: -78.26 -1.70 -79.96 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000573868632.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.189 kcal (2) G-P(sol) polarization free energy of solvation -78.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.958 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.770 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds