Wall clock time and date at job start Tue Mar 31 2020 05:54:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46963 * 2 1 4 4 C 1.52993 * 109.47266 * 239.99843 * 2 1 3 5 5 C 1.50699 * 109.47294 * 175.99963 * 4 2 1 6 6 H 1.08003 * 119.99816 * 359.97438 * 5 4 2 7 7 C 1.37879 * 119.99852 * 179.97438 * 5 4 2 8 8 N 1.31510 * 120.00325 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99710 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47119 * 60.00230 * 9 7 5 11 11 H 1.48495 * 109.47143 * 180.02562 * 9 7 5 12 12 H 1.48507 * 109.47294 * 300.00116 * 9 7 5 13 13 N 1.46901 * 109.46918 * 119.99855 * 2 1 3 14 14 C 1.46851 * 110.99975 * 289.38594 * 13 2 1 15 15 C 1.53041 * 109.52392 * 185.83967 * 14 13 2 16 16 C 1.53118 * 109.27589 * 300.82143 * 15 14 13 17 17 N 1.46506 * 109.51734 * 177.55601 * 16 15 14 18 18 C 1.47050 * 125.40699 * 120.00463 * 17 16 15 19 19 C 1.54103 * 103.99030 * 179.97438 * 18 17 16 20 20 N 1.47385 * 103.70487 * 0.10890 * 19 18 17 21 21 C 1.33942 * 125.41419 * 300.00061 * 17 16 15 22 22 O 1.21590 * 123.04283 * 359.97438 * 21 17 16 23 23 C 1.53117 * 109.16130 * 57.65765 * 16 15 14 24 24 C 1.46843 * 111.00392 * 53.59837 * 13 2 1 25 25 H 1.08999 * 109.47144 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.47433 * 300.00269 * 1 2 3 27 27 H 1.09001 * 109.47231 * 59.99936 * 1 2 3 28 28 H 1.09009 * 109.47136 * 295.99752 * 4 2 1 29 29 H 1.08998 * 109.47545 * 55.99398 * 4 2 1 30 30 H 0.96998 * 119.99991 * 179.97438 * 8 7 5 31 31 H 1.09004 * 109.45945 * 65.82519 * 14 13 2 32 32 H 1.08997 * 109.45610 * 305.85448 * 14 13 2 33 33 H 1.09000 * 109.50386 * 180.88583 * 15 14 13 34 34 H 1.08997 * 109.49904 * 60.76345 * 15 14 13 35 35 H 1.08996 * 109.52879 * 297.68154 * 16 15 14 36 36 H 1.09004 * 110.55124 * 298.59390 * 18 17 16 37 37 H 1.08998 * 110.55235 * 61.25676 * 18 17 16 38 38 H 1.09005 * 110.54927 * 118.67045 * 19 18 17 39 39 H 1.08999 * 110.54908 * 241.47054 * 19 18 17 40 40 H 0.96997 * 125.37811 * 179.97438 * 20 19 18 41 41 H 1.09001 * 109.50683 * 62.28138 * 23 16 15 42 42 H 1.09003 * 109.50622 * 182.39814 * 23 16 15 43 43 H 1.09007 * 109.46284 * 294.17707 * 24 13 2 44 44 H 1.08998 * 109.45905 * 54.14491 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5438 -0.6360 -1.2997 6 1 4.0818 -0.1187 -0.5191 7 6 4.2326 -1.2184 -2.3425 8 7 3.5774 -1.8487 -3.2927 9 14 6.0965 -1.1121 -2.4055 10 1 6.6700 -1.7524 -1.1947 11 1 6.5915 -1.8122 -3.6179 12 1 6.5097 0.3135 -2.4544 13 7 2.0196 -0.6925 1.1995 14 6 1.7660 0.1036 2.4071 15 6 2.4156 -0.5770 3.6142 16 6 1.8326 -1.9836 3.7757 17 7 2.4926 -2.6615 4.8942 18 6 1.8200 -3.1692 6.0993 19 6 2.9621 -3.7804 6.9340 20 7 4.1607 -3.5485 6.1083 21 6 3.8044 -2.9175 4.9817 22 8 4.6001 -2.6043 4.1173 23 6 2.0675 -2.7760 2.4867 24 6 1.4281 -2.0317 1.3124 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8900 28 1 1.7364 -1.7676 -1.2140 29 1 1.6193 -0.2506 -2.1377 30 1 4.0620 -2.2581 -4.0265 31 1 0.6912 0.1837 2.5702 32 1 2.1893 1.1000 2.2807 33 1 2.2138 0.0059 4.5129 34 1 3.4921 -0.6449 3.4578 35 1 0.7627 -1.9143 3.9719 36 1 1.3432 -2.3539 6.6436 37 1 1.0871 -3.9318 5.8359 38 1 3.0519 -3.2687 7.8923 39 1 2.7983 -4.8476 7.0830 40 1 5.0640 -3.8130 6.3428 41 1 3.1386 -2.8786 2.3126 42 1 1.6172 -3.7643 2.5799 43 1 0.3548 -1.9417 1.4806 44 1 1.6058 -2.5861 0.3909 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574992746.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:35 Heat of formation + Delta-G solvation = -9.944349 kcal Electronic energy + Delta-G solvation = -23447.334796 eV Core-core repulsion = 20206.955029 eV Total energy + Delta-G solvation = -3240.379767 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06157 -38.72989 -36.20049 -35.40443 -32.96368 -31.81967 -30.46324 -29.38662 -28.37853 -27.19822 -24.25064 -23.11531 -23.01867 -22.62482 -20.77724 -19.39410 -18.52839 -17.67466 -16.53725 -16.06858 -15.92844 -15.25039 -14.69485 -14.46434 -14.19696 -14.08037 -13.79174 -13.57280 -13.51686 -13.11531 -12.83205 -12.50646 -12.37793 -12.07721 -11.75235 -11.64518 -11.39386 -11.17333 -10.93932 -10.73146 -10.47401 -10.43431 -10.29528 -10.12272 -9.78141 -9.68748 -9.25479 -9.06831 -8.87203 -8.49562 -8.13895 -7.33516 -5.77967 -3.74676 2.56624 3.27249 3.51906 3.54065 3.61603 3.81789 4.20363 4.60548 4.62921 4.68837 4.79116 5.08576 5.14808 5.16164 5.32021 5.45121 5.59070 5.59854 5.68700 5.70894 5.78751 5.86723 5.93912 6.02096 6.04693 6.10979 6.16757 6.34649 6.47880 6.64165 6.66546 6.74097 6.83929 6.96353 7.06361 7.08470 7.57864 7.64849 7.79210 8.03279 8.13270 8.23967 8.69885 8.71542 9.31261 9.87039 11.34075 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018167 B = 0.005127 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1540.847033 B = 5459.533274 C = 6475.752383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.086 3.914 3 H 0.069 0.931 4 C 0.031 3.969 5 C -0.487 4.487 6 H 0.060 0.940 7 C 0.051 3.949 8 N -0.907 5.907 9 Si 0.888 3.112 10 H -0.276 1.276 11 H -0.292 1.292 12 H -0.280 1.280 13 N -0.508 5.508 14 C 0.060 3.940 15 C -0.129 4.129 16 C 0.187 3.813 17 N -0.630 5.630 18 C 0.091 3.909 19 C 0.095 3.905 20 N -0.750 5.750 21 C 0.694 3.306 22 O -0.566 6.566 23 C -0.130 4.130 24 C 0.063 3.937 25 H 0.052 0.948 26 H 0.038 0.962 27 H 0.055 0.945 28 H 0.018 0.982 29 H 0.017 0.983 30 H 0.256 0.744 31 H 0.022 0.978 32 H 0.072 0.928 33 H 0.056 0.944 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.077 0.923 37 H 0.078 0.922 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.426 0.574 41 H 0.093 0.907 42 H 0.057 0.943 43 H 0.022 0.978 44 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.700 -2.869 22.046 23.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.087 0.913 4 C -0.006 4.006 5 C -0.525 4.525 6 H 0.079 0.921 7 C -0.148 4.148 8 N -0.548 5.548 9 Si 0.716 3.284 10 H -0.202 1.202 11 H -0.218 1.218 12 H -0.206 1.206 13 N -0.232 5.232 14 C -0.069 4.069 15 C -0.167 4.167 16 C 0.085 3.915 17 N -0.369 5.369 18 C -0.033 4.033 19 C -0.031 4.031 20 N -0.413 5.413 21 C 0.395 3.605 22 O -0.442 6.442 23 C -0.169 4.169 24 C -0.065 4.065 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.074 0.926 28 H 0.036 0.964 29 H 0.036 0.964 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.090 0.910 33 H 0.075 0.925 34 H 0.109 0.891 35 H 0.099 0.901 36 H 0.096 0.904 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.267 0.733 41 H 0.111 0.889 42 H 0.076 0.924 43 H 0.040 0.960 44 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -6.848 -2.770 21.259 22.506 hybrid contribution 0.388 -0.150 0.328 0.530 sum -6.459 -2.920 21.587 22.721 Atomic orbital electron populations 1.22524 0.99882 1.01253 1.00554 1.21920 0.89918 0.98350 0.91945 0.91285 1.19187 0.96407 0.95260 0.89752 1.21146 0.91639 1.33146 1.06581 0.92137 1.24974 0.97916 0.95918 0.95984 1.69954 1.35179 1.37488 1.12162 0.86717 0.86615 0.77961 0.77068 1.20204 1.21766 1.20555 1.61997 1.58449 1.01608 1.01095 1.21996 0.96906 0.97439 0.90572 1.21991 1.03665 0.94040 0.97050 1.20918 0.94851 0.91811 0.83922 1.47411 1.06693 1.62127 1.20651 1.22335 0.95726 0.98986 0.86271 1.22327 0.84558 1.01251 0.94926 1.45249 1.10214 1.64712 1.21133 1.15979 0.83143 0.78925 0.82491 1.91041 1.53264 1.58273 1.41626 1.22017 1.04575 0.97304 0.92964 1.22007 0.94425 0.91179 0.98903 0.92870 0.94260 0.92608 0.96358 0.96440 0.93407 0.95965 0.90981 0.92514 0.89055 0.90149 0.90427 0.90342 0.90335 0.90303 0.73265 0.88852 0.92413 0.96009 0.89106 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.17 8.44 37.16 0.31 -2.86 16 2 C 0.09 1.81 2.26 -67.71 -0.15 1.66 16 3 H 0.07 1.47 7.98 -51.93 -0.41 1.06 16 4 C 0.03 0.81 4.37 -27.89 -0.12 0.69 16 5 C -0.49 -14.22 8.81 -34.44 -0.30 -14.53 16 6 H 0.06 1.79 7.74 -52.48 -0.41 1.39 16 7 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 8 N -0.91 -28.17 13.29 55.43 0.74 -27.43 16 9 Si 0.89 23.33 29.54 -169.99 -5.02 18.31 16 10 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 11 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 12 H -0.28 -7.20 7.11 56.52 0.40 -6.79 16 13 N -0.51 -10.08 4.29 -226.69 -0.97 -11.05 16 14 C 0.06 0.97 5.14 -3.83 -0.02 0.95 16 15 C -0.13 -1.98 5.42 -26.65 -0.14 -2.12 16 16 C 0.19 2.61 2.85 -67.81 -0.19 2.41 16 17 N -0.63 -7.96 2.85 -171.06 -0.49 -8.45 16 18 C 0.09 0.68 7.64 -3.17 -0.02 0.66 16 19 C 0.09 0.59 8.08 -2.98 -0.02 0.57 16 20 N -0.75 -7.74 6.39 -64.47 -0.41 -8.15 16 21 C 0.69 10.47 8.06 -88.40 -0.71 9.76 16 22 O -0.57 -11.56 14.95 5.29 0.08 -11.48 16 23 C -0.13 -2.19 5.42 -26.65 -0.14 -2.33 16 24 C 0.06 1.16 4.53 -3.84 -0.02 1.14 16 25 H 0.05 0.91 6.45 -51.93 -0.34 0.57 16 26 H 0.04 0.59 6.84 -51.93 -0.36 0.24 16 27 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 28 H 0.02 0.50 6.28 -51.92 -0.33 0.18 16 29 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 31 H 0.02 0.33 6.89 -51.93 -0.36 -0.03 16 32 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 1.75 6.73 -51.93 -0.35 1.40 16 35 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.08 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 40 H 0.43 3.74 8.96 -40.82 -0.37 3.37 16 41 H 0.09 1.96 6.70 -51.93 -0.35 1.62 16 42 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 43 H 0.02 0.36 6.57 -51.92 -0.34 0.02 16 44 H 0.09 1.93 6.17 -51.93 -0.32 1.61 16 LS Contribution 335.97 15.07 5.06 5.06 Total: -1.00 -35.47 335.97 -9.93 -45.39 By element: Atomic # 1 Polarization: 7.64 SS G_CDS: -7.27 Total: 0.36 kcal Atomic # 6 Polarization: -0.92 SS G_CDS: -1.64 Total: -2.56 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -1.13 Total: -55.09 kcal Atomic # 8 Polarization: -11.56 SS G_CDS: 0.08 Total: -11.48 kcal Atomic # 14 Polarization: 23.33 SS G_CDS: -5.02 Total: 18.31 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -35.47 -9.93 -45.39 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574992746.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.450 kcal (2) G-P(sol) polarization free energy of solvation -35.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.394 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.944 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds