Wall clock time and date at job start Tue Mar 31 2020 05:54:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.47238 * 2 1 4 4 C 1.53006 * 109.47156 * 119.99280 * 2 1 3 5 5 C 1.50699 * 109.47052 * 183.57402 * 4 2 1 6 6 H 1.07994 * 120.00113 * 5.09317 * 5 4 2 7 7 C 1.37878 * 119.99905 * 185.08526 * 5 4 2 8 8 N 1.31515 * 120.00029 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00165 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.46644 * 60.00128 * 9 7 5 11 11 H 1.48500 * 109.47061 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.46721 * 299.99984 * 9 7 5 13 13 N 1.46894 * 109.47533 * 239.99361 * 2 1 3 14 14 C 1.46849 * 111.00137 * 308.74981 * 13 2 1 15 15 C 1.53034 * 109.52201 * 185.83973 * 14 13 2 16 16 C 1.53125 * 109.27850 * 300.81545 * 15 14 13 17 17 N 1.46493 * 109.52478 * 177.56603 * 16 15 14 18 18 C 1.47057 * 125.41313 * 119.99985 * 17 16 15 19 19 C 1.54101 * 103.98883 * 179.97438 * 18 17 16 20 20 N 1.47389 * 103.70483 * 0.11242 * 19 18 17 21 21 C 1.33949 * 109.21079 * 359.88274 * 20 19 18 22 22 O 1.21581 * 123.03974 * 180.10129 * 21 20 19 23 23 C 1.53119 * 109.15832 * 57.65533 * 16 15 14 24 24 C 1.46851 * 110.99726 * 72.95723 * 13 2 1 25 25 H 1.09004 * 109.46784 * 180.02562 * 1 2 3 26 26 H 1.09001 * 109.47331 * 300.00228 * 1 2 3 27 27 H 1.09002 * 109.46836 * 60.00762 * 1 2 3 28 28 H 1.09000 * 109.47186 * 303.57792 * 4 2 1 29 29 H 1.09003 * 109.46660 * 63.57592 * 4 2 1 30 30 H 0.97001 * 120.00261 * 179.97438 * 8 7 5 31 31 H 1.08991 * 109.46278 * 65.81954 * 14 13 2 32 32 H 1.09003 * 109.45776 * 305.84822 * 14 13 2 33 33 H 1.09001 * 109.50217 * 180.88205 * 15 14 13 34 34 H 1.08993 * 109.50971 * 60.75725 * 15 14 13 35 35 H 1.09006 * 109.51926 * 297.68871 * 16 15 14 36 36 H 1.09000 * 110.54474 * 298.59369 * 18 17 16 37 37 H 1.09003 * 110.54689 * 61.26140 * 18 17 16 38 38 H 1.09005 * 110.54167 * 118.66681 * 19 18 17 39 39 H 1.08993 * 110.55481 * 241.47406 * 19 18 17 40 40 H 0.97004 * 125.37829 * 179.97438 * 20 19 18 41 41 H 1.08993 * 109.50374 * 62.29047 * 23 16 15 42 42 H 1.09006 * 109.50050 * 182.40808 * 23 16 15 43 43 H 1.09000 * 109.46043 * 294.17653 * 24 13 2 44 44 H 1.08994 * 109.46866 * 54.14329 * 24 13 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7211 1.2494 5 6 3.5444 -0.6449 1.2944 6 1 4.0780 -0.0643 0.5565 7 6 4.2396 -1.3162 2.2778 8 7 3.5898 -2.0235 3.1763 9 14 6.1043 -1.2211 2.3342 10 1 6.5229 0.1938 2.5012 11 1 6.6066 -2.0248 3.4775 12 1 6.6657 -1.7574 1.0683 13 7 2.0198 -0.6926 -1.1993 14 6 1.3862 -2.0097 -1.3420 15 6 2.0236 -2.7594 -2.5140 16 6 1.8405 -1.9426 -3.7962 17 7 2.4991 -2.6275 -4.9112 18 6 1.8325 -3.1022 -6.1330 19 6 2.9706 -3.7364 -6.9560 20 7 4.1604 -3.5529 -6.1057 21 6 3.8041 -2.9216 -4.9793 22 8 4.5939 -2.6407 -4.0986 23 6 2.4665 -0.5586 -3.6041 24 6 1.8164 0.1274 -2.4004 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5137 -0.8901 28 1 1.6253 -0.2455 2.1382 29 1 1.7300 -1.7656 1.2180 30 1 4.0789 -2.4961 3.8679 31 1 0.3202 -1.8815 -1.5294 32 1 1.5275 -2.5818 -0.4250 33 1 1.5425 -3.7306 -2.6295 34 1 3.0870 -2.9001 -2.3210 35 1 0.7772 -1.8359 -4.0113 36 1 1.0752 -3.8478 -5.8906 37 1 1.3868 -2.2678 -6.6746 38 1 2.7778 -4.7963 -7.1221 39 1 3.0925 -3.2153 -7.9055 40 1 5.0593 -3.8424 -6.3275 41 1 3.5369 -0.6645 -3.4282 42 1 2.3018 0.0426 -4.4983 43 1 0.7483 0.2456 -2.5829 44 1 2.2698 1.1074 -2.2523 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000574992747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:54:37 Heat of formation + Delta-G solvation = -9.880198 kcal Electronic energy + Delta-G solvation = -23465.997143 eV Core-core repulsion = 20225.620158 eV Total energy + Delta-G solvation = -3240.376985 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.05555 -38.72052 -36.19574 -35.39823 -32.95960 -31.81369 -30.45682 -29.38590 -28.37646 -27.19032 -24.24757 -23.11039 -22.98580 -22.65195 -20.76261 -19.38506 -18.53582 -17.66838 -16.53293 -16.05992 -15.93469 -15.24281 -14.69163 -14.45192 -14.19514 -14.07463 -13.78452 -13.56251 -13.51953 -13.10626 -12.82263 -12.50341 -12.36634 -12.06805 -11.75373 -11.62818 -11.39331 -11.18949 -10.92898 -10.72227 -10.46007 -10.42682 -10.30120 -10.11081 -9.80872 -9.68172 -9.24897 -9.06738 -8.86651 -8.49031 -8.13190 -7.32137 -5.77149 -3.73671 2.57179 3.27953 3.52264 3.54638 3.62247 3.82324 4.20810 4.60931 4.63349 4.69518 4.79546 5.09001 5.15261 5.16535 5.32461 5.45548 5.59403 5.61223 5.69008 5.71487 5.79282 5.86106 5.94160 6.02139 6.04726 6.11092 6.17421 6.34847 6.47770 6.63816 6.67560 6.74383 6.83448 6.96946 7.07052 7.09516 7.58357 7.64835 7.79452 8.03821 8.14223 8.24341 8.70077 8.72236 9.31288 9.87727 11.34912 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.017894 B = 0.005209 C = 0.004372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.437420 B = 5374.079874 C = 6403.305961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.087 3.913 3 H 0.068 0.932 4 C 0.031 3.969 5 C -0.485 4.485 6 H 0.059 0.941 7 C 0.052 3.948 8 N -0.907 5.907 9 Si 0.887 3.113 10 H -0.280 1.280 11 H -0.292 1.292 12 H -0.276 1.276 13 N -0.507 5.507 14 C 0.064 3.936 15 C -0.130 4.130 16 C 0.187 3.813 17 N -0.630 5.630 18 C 0.091 3.909 19 C 0.095 3.905 20 N -0.750 5.750 21 C 0.694 3.306 22 O -0.566 6.566 23 C -0.129 4.129 24 C 0.060 3.940 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.038 0.962 28 H 0.014 0.986 29 H 0.022 0.978 30 H 0.256 0.744 31 H 0.022 0.978 32 H 0.089 0.911 33 H 0.057 0.943 34 H 0.093 0.907 35 H 0.080 0.920 36 H 0.078 0.922 37 H 0.078 0.922 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.426 0.574 41 H 0.091 0.909 42 H 0.056 0.944 43 H 0.022 0.978 44 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.692 -2.328 -21.945 23.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.021 4.021 3 H 0.086 0.914 4 C -0.006 4.006 5 C -0.523 4.523 6 H 0.077 0.923 7 C -0.147 4.147 8 N -0.548 5.548 9 Si 0.716 3.284 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.202 1.202 13 N -0.230 5.230 14 C -0.064 4.064 15 C -0.169 4.169 16 C 0.085 3.915 17 N -0.369 5.369 18 C -0.033 4.033 19 C -0.031 4.031 20 N -0.413 5.413 21 C 0.394 3.606 22 O -0.442 6.442 23 C -0.167 4.167 24 C -0.069 4.069 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.057 0.943 28 H 0.032 0.968 29 H 0.040 0.960 30 H 0.066 0.934 31 H 0.040 0.960 32 H 0.108 0.892 33 H 0.076 0.924 34 H 0.111 0.889 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.267 0.733 41 H 0.110 0.890 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -6.845 -2.276 -21.150 22.346 hybrid contribution 0.401 -0.139 -0.359 0.556 sum -6.444 -2.415 -21.509 22.583 Atomic orbital electron populations 1.22525 0.99853 1.01291 1.00512 1.21918 0.89928 0.98234 0.92054 0.91393 1.19180 0.96368 0.95467 0.89578 1.21108 0.91554 1.28793 1.10883 0.92313 1.24960 0.97902 0.95856 0.96020 1.69953 1.35151 1.33111 1.16579 0.86723 0.86656 0.77745 0.77285 1.20575 1.21761 1.20183 1.61991 1.57796 1.02037 1.01226 1.21996 0.94132 0.91530 0.98782 1.22018 1.04545 0.97241 0.93065 1.20915 0.94812 0.91748 0.84019 1.47411 1.07475 1.62156 1.19853 1.22335 0.95817 0.99197 0.85961 1.22325 0.84795 1.01331 0.94607 1.45251 1.11047 1.64732 1.20285 1.15979 0.83085 0.78868 0.82619 1.91041 1.53417 1.59227 1.40469 1.21990 1.03535 0.94179 0.97045 1.21993 0.97066 0.97166 0.90646 0.92801 0.92634 0.94298 0.96790 0.96002 0.93418 0.95988 0.89233 0.92423 0.88864 0.90159 0.90367 0.90410 0.90302 0.90343 0.73265 0.89008 0.92522 0.96034 0.90975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.16 8.40 37.16 0.31 -2.85 16 2 C 0.09 1.81 2.26 -67.71 -0.15 1.66 16 3 H 0.07 1.44 7.93 -51.93 -0.41 1.03 16 4 C 0.03 0.81 4.40 -27.88 -0.12 0.69 16 5 C -0.48 -14.19 8.80 -34.44 -0.30 -14.49 16 6 H 0.06 1.74 7.75 -52.49 -0.41 1.33 16 7 C 0.05 1.55 5.46 -17.82 -0.10 1.45 16 8 N -0.91 -28.22 13.29 55.43 0.74 -27.49 16 9 Si 0.89 23.38 29.54 -169.99 -5.02 18.36 16 10 H -0.28 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.57 7.11 56.52 0.40 -7.17 16 12 H -0.28 -7.39 7.11 56.52 0.40 -6.99 16 13 N -0.51 -10.11 4.26 -226.69 -0.97 -11.07 16 14 C 0.06 1.18 4.47 -3.83 -0.02 1.16 16 15 C -0.13 -2.20 5.42 -26.65 -0.14 -2.34 16 16 C 0.19 2.62 2.85 -67.81 -0.19 2.43 16 17 N -0.63 -8.01 2.85 -171.05 -0.49 -8.50 16 18 C 0.09 0.69 7.65 -3.16 -0.02 0.67 16 19 C 0.09 0.60 8.08 -2.98 -0.02 0.57 16 20 N -0.75 -7.80 6.39 -64.47 -0.41 -8.21 16 21 C 0.69 10.53 8.06 -88.40 -0.71 9.82 16 22 O -0.57 -11.62 14.95 5.29 0.08 -11.54 16 23 C -0.13 -1.99 5.42 -26.65 -0.14 -2.13 16 24 C 0.06 0.98 5.18 -3.83 -0.02 0.97 16 25 H 0.05 0.92 6.45 -51.93 -0.33 0.59 16 26 H 0.05 0.94 8.14 -51.93 -0.42 0.51 16 27 H 0.04 0.59 6.93 -51.93 -0.36 0.23 16 28 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.02 0.61 6.39 -51.93 -0.33 0.27 16 30 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 31 H 0.02 0.36 6.57 -51.93 -0.34 0.02 16 32 H 0.09 1.90 6.28 -51.93 -0.33 1.58 16 33 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 34 H 0.09 1.97 6.72 -51.93 -0.35 1.62 16 35 H 0.08 0.94 8.10 -51.93 -0.42 0.52 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 40 H 0.43 3.77 8.96 -40.82 -0.37 3.41 16 41 H 0.09 1.78 6.71 -51.93 -0.35 1.43 16 42 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.02 0.32 6.98 -51.93 -0.36 -0.05 16 44 H 0.07 1.18 7.98 -51.93 -0.41 0.76 16 LS Contribution 336.22 15.07 5.07 5.07 Total: -1.00 -35.57 336.22 -9.94 -45.51 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: -7.29 Total: 0.28 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.64 Total: -2.41 kcal Atomic # 7 Polarization: -54.14 SS G_CDS: -1.13 Total: -55.26 kcal Atomic # 8 Polarization: -11.62 SS G_CDS: 0.08 Total: -11.54 kcal Atomic # 14 Polarization: 23.38 SS G_CDS: -5.02 Total: 18.36 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -35.57 -9.94 -45.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000574992747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.625 kcal (2) G-P(sol) polarization free energy of solvation -35.569 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.505 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds