Wall clock time and date at job start Tue Mar 31 2020 05:31:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47495 * 2 1 4 4 C 1.52999 * 109.47048 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46866 * 179.97438 * 4 3 2 6 6 N 1.29947 * 126.28950 * 90.02521 * 5 4 3 7 7 O 1.21303 * 110.25088 * 180.02562 * 6 5 4 8 8 C 1.33643 * 109.81348 * 0.02562 * 7 6 5 9 9 C 1.50696 * 126.55052 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46961 * 165.02025 * 9 8 7 11 11 C 1.52997 * 109.47092 * 285.01816 * 9 8 7 12 12 N 1.46902 * 109.47479 * 45.01785 * 9 8 7 13 13 C 1.46893 * 111.00062 * 151.97465 * 12 9 8 14 14 H 1.09004 * 109.47560 * 330.51482 * 13 12 9 15 15 C 1.50707 * 109.46874 * 90.51049 * 13 12 9 16 16 H 1.07992 * 120.00053 * 0.27324 * 15 13 12 17 17 C 1.37880 * 119.99576 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00631 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99480 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47442 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47129 * 119.99936 * 19 17 15 22 22 H 1.48503 * 109.47279 * 239.99876 * 19 17 15 23 23 C 1.52997 * 109.47429 * 210.50679 * 13 12 9 24 24 C 1.53003 * 109.46745 * 62.97657 * 23 13 12 25 25 N 1.31132 * 106.89745 * 0.22314 * 8 7 6 26 26 H 1.09003 * 109.46773 * 60.00386 * 1 2 3 27 27 H 1.08996 * 109.47593 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47177 * 300.00668 * 1 2 3 29 29 H 1.08995 * 109.47177 * 239.99332 * 2 1 3 30 30 H 1.09003 * 109.46773 * 119.99613 * 2 1 3 31 31 H 1.08999 * 109.46971 * 59.99513 * 3 2 1 32 32 H 1.09003 * 109.46794 * 299.99601 * 3 2 1 33 33 H 1.09007 * 109.47088 * 60.00023 * 4 3 2 34 34 H 1.08993 * 109.47572 * 299.99982 * 4 3 2 35 35 H 1.08999 * 109.47447 * 180.02562 * 11 9 8 36 36 H 1.09006 * 109.47501 * 300.00644 * 11 9 8 37 37 H 1.09003 * 109.47046 * 60.00262 * 11 9 8 38 38 H 1.00896 * 110.99605 * 275.93520 * 12 9 8 39 39 H 0.96999 * 120.00083 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47473 * 182.97330 * 23 13 12 41 41 H 1.08999 * 109.47564 * 302.97615 * 23 13 12 42 42 H 1.09000 * 109.47169 * 294.86825 * 24 23 13 43 43 H 1.08995 * 109.47479 * 54.87437 * 24 23 13 44 44 H 1.09004 * 109.47216 * 174.87778 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 7 4.3288 3.5887 1.0471 7 8 4.7170 4.6879 0.7115 8 6 4.7454 4.7706 -0.6221 9 6 5.1665 5.9652 -1.4384 10 1 5.3392 5.6579 -2.4699 11 6 4.0627 7.0240 -1.3998 12 7 6.4040 6.5275 -0.8813 13 6 7.1928 7.1988 -1.9229 14 1 7.0062 6.7210 -2.8847 15 6 6.7945 8.6504 -1.9974 16 1 6.0349 9.0366 -1.3341 17 6 7.4037 9.4864 -2.9091 18 7 8.3319 9.0171 -3.7139 19 14 6.9095 11.2854 -3.0019 20 1 5.8509 11.5606 -1.9974 21 1 8.0918 12.1387 -2.7206 22 1 6.3932 11.5875 -4.3612 23 6 8.6808 7.0952 -1.5821 24 6 9.1020 5.6243 -1.5794 25 7 4.3318 3.6153 -1.0845 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 3.9337 0.9283 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 4.3670 7.8879 -1.9906 36 1 3.1444 6.6068 -1.8131 37 1 3.8900 7.3313 -0.3683 38 1 6.2038 7.1560 -0.1178 39 1 8.7606 9.6054 -4.3550 40 1 9.2628 7.6383 -2.3267 41 1 8.8588 7.5260 -0.5969 42 1 8.5867 5.1003 -0.7744 43 1 8.8405 5.1696 -2.5348 44 1 10.1791 5.5551 -1.4267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580090884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:37 Heat of formation + Delta-G solvation = 35.338382 kcal Electronic energy + Delta-G solvation = -22254.635450 eV Core-core repulsion = 19016.219290 eV Total energy + Delta-G solvation = -3238.416160 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.20180 -37.17294 -36.70778 -35.01167 -33.85980 -32.00668 -31.34415 -29.96298 -28.56863 -26.29169 -25.14885 -24.11697 -22.78666 -22.59991 -21.39345 -20.14800 -19.66540 -17.69987 -17.05596 -16.65822 -15.80123 -15.21295 -14.89243 -14.42490 -14.22503 -14.08706 -13.66405 -13.37818 -12.93243 -12.71786 -12.60548 -12.27405 -12.17935 -11.90454 -11.71125 -11.52587 -11.43042 -11.25879 -11.23875 -11.06589 -10.93942 -10.88995 -10.80914 -10.74072 -10.61564 -10.23115 -9.77454 -9.67669 -9.44814 -9.14378 -8.48014 -7.58322 -6.10166 -4.22497 1.51759 2.51546 3.21307 3.25690 3.30979 3.32765 3.78513 4.22543 4.32719 4.67657 4.71959 4.81998 5.02482 5.15537 5.25658 5.29414 5.37757 5.41229 5.49509 5.54025 5.65092 5.67526 5.72511 5.86769 5.98695 6.03633 6.08643 6.13776 6.22672 6.32946 6.36164 6.45894 6.65092 6.65962 6.99203 7.11556 7.30391 7.46068 7.68452 7.91331 7.96367 8.14505 8.44627 8.52224 8.87205 9.45467 10.91343 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028039 B = 0.003399 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.362628 B = 8236.144515 C = 8753.630071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.122 4.122 3 C -0.114 4.114 4 C -0.025 4.025 5 C 0.164 3.836 6 N -0.398 5.398 7 O 0.079 5.921 8 C 0.222 3.778 9 C 0.180 3.820 10 H 0.117 0.883 11 C -0.177 4.177 12 N -0.682 5.682 13 C 0.218 3.782 14 H 0.036 0.964 15 C -0.548 4.548 16 H 0.060 0.940 17 C 0.069 3.931 18 N -0.882 5.882 19 Si 0.889 3.111 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 C -0.106 4.106 24 C -0.137 4.137 25 N -0.496 5.496 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.053 0.947 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.093 0.907 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.052 0.948 37 H 0.057 0.943 38 H 0.341 0.659 39 H 0.262 0.738 40 H 0.092 0.908 41 H 0.034 0.966 42 H 0.044 0.956 43 H 0.037 0.963 44 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.316 -12.222 5.258 16.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.153 4.153 4 C -0.064 4.064 5 C -0.109 4.109 6 N -0.107 5.107 7 O 0.023 5.977 8 C 0.001 3.999 9 C 0.066 3.934 10 H 0.135 0.865 11 C -0.237 4.237 12 N -0.313 5.313 13 C 0.112 3.888 14 H 0.054 0.946 15 C -0.587 4.587 16 H 0.079 0.921 17 C -0.134 4.134 18 N -0.520 5.520 19 Si 0.717 3.283 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 C -0.144 4.144 24 C -0.195 4.195 25 N -0.230 5.230 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.072 0.928 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.111 0.889 34 H 0.106 0.894 35 H 0.117 0.883 36 H 0.071 0.929 37 H 0.076 0.924 38 H 0.160 0.840 39 H 0.072 0.928 40 H 0.111 0.889 41 H 0.052 0.948 42 H 0.063 0.937 43 H 0.056 0.944 44 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -10.022 -13.343 5.567 17.592 hybrid contribution -0.584 1.980 -0.277 2.083 sum -10.606 -11.363 5.290 16.419 Atomic orbital electron populations 1.21766 0.95702 1.01592 1.01967 1.21507 0.96049 0.96172 1.02282 1.21584 0.93298 0.97498 1.02900 1.19925 0.96000 0.86164 1.04333 1.25738 1.00935 1.00217 0.84050 1.74572 1.18495 0.93371 1.24294 1.85269 1.60486 1.26623 1.25307 1.29434 0.92329 0.96593 0.81518 1.20041 0.91832 0.86322 0.95171 0.86530 1.22586 0.97756 1.00239 1.03076 1.60768 1.15495 1.41770 1.13296 1.19278 0.89608 0.91489 0.88474 0.94587 1.21858 1.22042 0.95079 1.19684 0.92144 1.24925 0.94676 0.98473 0.95322 1.69880 1.25216 1.35517 1.21353 0.86592 0.78525 0.85327 0.77863 1.19790 1.20976 1.21038 1.21515 0.98545 0.93571 1.00813 1.21701 0.98080 0.99477 1.00231 1.71876 1.19754 1.02067 1.29302 0.92625 0.92692 0.92759 0.91630 0.91820 0.91717 0.91246 0.88860 0.89447 0.88261 0.92906 0.92404 0.84028 0.92778 0.88944 0.94753 0.93686 0.94420 0.95518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.09 9.91 37.16 0.37 -0.72 16 2 C -0.12 -0.94 5.93 -26.73 -0.16 -1.10 16 3 C -0.11 -1.13 5.20 -26.73 -0.14 -1.27 16 4 C -0.03 -0.29 5.84 -27.88 -0.16 -0.45 16 5 C 0.16 2.57 7.47 -156.36 -1.17 1.40 16 6 N -0.40 -6.80 12.16 30.91 0.38 -6.43 16 7 O 0.08 1.40 11.31 18.10 0.20 1.61 16 8 C 0.22 3.86 7.35 -13.06 -0.10 3.77 16 9 C 0.18 3.14 3.14 -68.87 -0.22 2.92 16 10 H 0.12 2.13 7.31 -51.93 -0.38 1.75 16 11 C -0.18 -2.79 8.88 37.16 0.33 -2.46 16 12 N -0.68 -13.15 5.50 -102.17 -0.56 -13.71 16 13 C 0.22 4.93 2.02 -68.87 -0.14 4.79 16 14 H 0.04 0.90 7.29 -51.93 -0.38 0.52 16 15 C -0.55 -13.29 7.25 -34.44 -0.25 -13.54 16 16 H 0.06 1.43 6.99 -52.49 -0.37 1.06 16 17 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 18 N -0.88 -23.49 11.30 55.43 0.63 -22.86 16 19 Si 0.89 19.88 29.54 -169.99 -5.02 14.86 16 20 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 21 H -0.28 -6.43 7.11 56.52 0.40 -6.02 16 22 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 23 C -0.11 -2.40 5.44 -26.73 -0.15 -2.55 16 24 C -0.14 -2.77 9.72 37.16 0.36 -2.41 16 25 N -0.50 -8.58 11.55 -9.86 -0.11 -8.69 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 33 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.09 0.89 8.14 -51.93 -0.42 0.46 16 35 H 0.10 1.73 6.36 -51.93 -0.33 1.40 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 0.85 8.12 -51.93 -0.42 0.43 16 38 H 0.34 6.45 7.97 -39.29 -0.31 6.13 16 39 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 40 H 0.09 2.34 6.00 -51.93 -0.31 2.03 16 41 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 42 H 0.04 0.89 7.84 -51.93 -0.41 0.48 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.03 0.49 8.14 -51.93 -0.42 0.06 16 LS Contribution 358.19 15.07 5.40 5.40 Total: -1.00 -26.50 358.19 -8.14 -34.64 By element: Atomic # 1 Polarization: 12.69 SS G_CDS: -7.54 Total: 5.15 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -1.51 Total: -9.96 kcal Atomic # 7 Polarization: -52.02 SS G_CDS: 0.33 Total: -51.69 kcal Atomic # 8 Polarization: 1.40 SS G_CDS: 0.20 Total: 1.61 kcal Atomic # 14 Polarization: 19.88 SS G_CDS: -5.02 Total: 14.86 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -26.50 -8.14 -34.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580090884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.978 kcal (2) G-P(sol) polarization free energy of solvation -26.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.640 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds