Wall clock time and date at job start Tue Mar 31 2020 05:31:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53001 * 109.47495 * 2 1 4 4 C 1.52999 * 109.47048 * 179.97438 * 3 2 1 5 5 C 1.50701 * 109.46866 * 179.97438 * 4 3 2 6 6 N 1.29947 * 126.28950 * 90.02521 * 5 4 3 7 7 O 1.21303 * 110.25088 * 180.02562 * 6 5 4 8 8 C 1.33643 * 109.81348 * 0.02562 * 7 6 5 9 9 C 1.50696 * 126.55052 * 179.97438 * 8 7 6 10 10 H 1.09003 * 109.46961 * 165.02025 * 9 8 7 11 11 C 1.52997 * 109.47092 * 285.01816 * 9 8 7 12 12 N 1.46902 * 109.47479 * 45.01785 * 9 8 7 13 13 C 1.46893 * 111.00062 * 151.97465 * 12 9 8 14 14 H 1.09004 * 109.47560 * 330.51482 * 13 12 9 15 15 C 1.50707 * 109.46874 * 90.51049 * 13 12 9 16 16 H 1.07992 * 120.00053 * 0.27324 * 15 13 12 17 17 C 1.37880 * 119.99576 * 180.02562 * 15 13 12 18 18 N 1.31509 * 120.00631 * 0.02562 * 17 15 13 19 19 Si 1.86802 * 119.99480 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.47442 * 0.02562 * 19 17 15 21 21 H 1.48495 * 109.47129 * 119.99936 * 19 17 15 22 22 H 1.48503 * 109.47279 * 239.99876 * 19 17 15 23 23 C 1.52997 * 109.47429 * 210.50679 * 13 12 9 24 24 C 1.53003 * 109.46745 * 62.97657 * 23 13 12 25 25 N 1.31132 * 106.89745 * 0.22314 * 8 7 6 26 26 H 1.09003 * 109.46773 * 60.00386 * 1 2 3 27 27 H 1.08996 * 109.47593 * 180.02562 * 1 2 3 28 28 H 1.08995 * 109.47177 * 300.00668 * 1 2 3 29 29 H 1.08995 * 109.47177 * 239.99332 * 2 1 3 30 30 H 1.09003 * 109.46773 * 119.99613 * 2 1 3 31 31 H 1.08999 * 109.46971 * 59.99513 * 3 2 1 32 32 H 1.09003 * 109.46794 * 299.99601 * 3 2 1 33 33 H 1.09007 * 109.47088 * 60.00023 * 4 3 2 34 34 H 1.08993 * 109.47572 * 299.99982 * 4 3 2 35 35 H 1.08999 * 109.47447 * 180.02562 * 11 9 8 36 36 H 1.09006 * 109.47501 * 300.00644 * 11 9 8 37 37 H 1.09003 * 109.47046 * 60.00262 * 11 9 8 38 38 H 1.00896 * 110.99605 * 275.93520 * 12 9 8 39 39 H 0.96999 * 120.00083 * 180.02562 * 18 17 15 40 40 H 1.08996 * 109.47473 * 182.97330 * 23 13 12 41 41 H 1.08999 * 109.47564 * 302.97615 * 23 13 12 42 42 H 1.09000 * 109.47169 * 294.86825 * 24 23 13 43 43 H 1.08995 * 109.47479 * 54.87437 * 24 23 13 44 44 H 1.09004 * 109.47216 * 174.87778 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 0.0006 5 6 4.0724 2.8632 0.0000 6 7 4.3288 3.5887 1.0471 7 8 4.7170 4.6879 0.7115 8 6 4.7454 4.7706 -0.6221 9 6 5.1665 5.9652 -1.4384 10 1 5.3392 5.6579 -2.4699 11 6 4.0627 7.0240 -1.3998 12 7 6.4040 6.5275 -0.8813 13 6 7.1928 7.1988 -1.9229 14 1 7.0062 6.7210 -2.8847 15 6 6.7945 8.6504 -1.9974 16 1 6.0349 9.0366 -1.3341 17 6 7.4037 9.4864 -2.9091 18 7 8.3319 9.0171 -3.7139 19 14 6.9095 11.2854 -3.0019 20 1 5.8509 11.5606 -1.9974 21 1 8.0918 12.1387 -2.7206 22 1 6.3932 11.5875 -4.3612 23 6 8.6808 7.0952 -1.5821 24 6 9.1020 5.6243 -1.5794 25 7 4.3318 3.6153 -1.0845 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8932 -0.5138 0.8901 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9563 -0.8901 33 1 3.9337 0.9283 -0.8892 34 1 3.9330 0.9287 0.8908 35 1 4.3670 7.8879 -1.9906 36 1 3.1444 6.6068 -1.8131 37 1 3.8900 7.3313 -0.3683 38 1 6.2038 7.1560 -0.1178 39 1 8.7606 9.6054 -4.3550 40 1 9.2628 7.6383 -2.3267 41 1 8.8588 7.5260 -0.5969 42 1 8.5867 5.1003 -0.7744 43 1 8.8405 5.1696 -2.5348 44 1 10.1791 5.5551 -1.4267 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580090884.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:36 Heat of formation + Delta-G solvation = 19.876305 kcal Electronic energy + Delta-G solvation = -22255.305936 eV Core-core repulsion = 19016.219290 eV Total energy + Delta-G solvation = -3239.086646 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -46.51708 -38.78353 -37.70844 -36.16870 -35.38209 -33.64966 -32.80693 -30.94401 -30.10300 -28.05602 -26.06186 -25.54936 -24.52465 -23.82417 -22.11003 -21.49802 -21.39296 -19.03349 -18.66346 -18.22896 -16.98111 -16.67050 -16.19179 -15.86902 -15.47576 -15.21649 -14.87987 -14.59159 -14.27167 -14.15679 -13.83514 -13.51689 -13.40676 -13.31678 -13.17315 -13.03399 -12.73860 -12.63306 -12.50796 -12.39185 -12.32016 -12.06013 -11.99726 -11.96345 -11.86526 -11.50718 -11.48515 -11.43915 -11.00185 -10.80265 -10.42653 -9.24075 -8.02744 -6.20737 0.17250 1.23553 1.43258 1.48291 1.56014 1.88365 2.44937 2.58206 3.03115 3.21622 3.67088 3.87355 3.96244 4.03707 4.10139 4.16612 4.30603 4.45966 4.52931 4.62142 4.69600 4.72986 4.76514 4.81299 4.86992 4.91859 4.94156 4.97588 5.05108 5.07166 5.17267 5.24002 5.30928 5.34909 5.40703 5.45210 5.53514 5.64162 5.78596 6.08953 6.15616 6.31871 6.70934 7.00741 7.19509 7.49962 8.96922 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.028039 B = 0.003399 C = 0.003198 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 998.362628 B = 8236.144515 C = 8753.630071 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.107 4.107 4 C -0.026 4.026 5 C 0.168 3.832 6 N -0.411 5.411 7 O 0.069 5.931 8 C 0.221 3.779 9 C 0.184 3.816 10 H 0.106 0.894 11 C -0.168 4.168 12 N -0.678 5.678 13 C 0.228 3.772 14 H 0.010 0.990 15 C -0.548 4.548 16 H 0.066 0.934 17 C 0.022 3.978 18 N -0.912 5.912 19 Si 0.947 3.053 20 H -0.265 1.265 21 H -0.287 1.287 22 H -0.286 1.286 23 C -0.103 4.103 24 C -0.125 4.125 25 N -0.509 5.509 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.056 0.944 32 H 0.058 0.942 33 H 0.105 0.895 34 H 0.103 0.897 35 H 0.082 0.918 36 H 0.068 0.932 37 H 0.068 0.932 38 H 0.345 0.655 39 H 0.260 0.740 40 H 0.065 0.935 41 H 0.031 0.969 42 H 0.048 0.952 43 H 0.031 0.969 44 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.443 -13.144 6.081 18.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.155 4.155 3 C -0.146 4.146 4 C -0.065 4.065 5 C -0.105 4.105 6 N -0.123 5.123 7 O 0.015 5.985 8 C 0.000 4.000 9 C 0.071 3.929 10 H 0.123 0.877 11 C -0.227 4.227 12 N -0.309 5.309 13 C 0.120 3.880 14 H 0.028 0.972 15 C -0.587 4.587 16 H 0.084 0.916 17 C -0.178 4.178 18 N -0.551 5.551 19 Si 0.774 3.226 20 H -0.189 1.189 21 H -0.214 1.214 22 H -0.212 1.212 23 C -0.142 4.142 24 C -0.183 4.183 25 N -0.243 5.243 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.071 0.929 29 H 0.091 0.909 30 H 0.092 0.908 31 H 0.075 0.925 32 H 0.077 0.923 33 H 0.123 0.877 34 H 0.121 0.879 35 H 0.101 0.899 36 H 0.087 0.913 37 H 0.087 0.913 38 H 0.164 0.836 39 H 0.070 0.930 40 H 0.083 0.917 41 H 0.050 0.950 42 H 0.067 0.933 43 H 0.050 0.950 44 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -11.162 -14.253 6.408 19.204 hybrid contribution -0.263 2.191 -0.520 2.267 sum -11.425 -12.063 5.888 17.627 Atomic orbital electron populations 1.21777 0.95333 1.02297 1.01726 1.21487 0.96326 0.94578 1.03159 1.21531 0.92137 0.98951 1.01987 1.20198 0.96885 0.83757 1.05672 1.26496 0.99426 1.01436 0.83121 1.74571 1.19494 0.93435 1.24822 1.85253 1.60919 1.27115 1.25178 1.29258 0.92568 0.96557 0.81635 1.19940 0.91630 0.86801 0.94526 0.87665 1.22460 0.97689 0.98939 1.03609 1.60625 1.16543 1.41283 1.12493 1.19013 0.90127 0.90780 0.88088 0.97234 1.22158 1.21517 0.95880 1.19115 0.91580 1.25602 0.94892 1.01907 0.95399 1.70005 1.26375 1.36587 1.22134 0.85683 0.78065 0.81195 0.77700 1.18892 1.21380 1.21242 1.21395 0.98314 0.94913 0.99563 1.21558 0.99174 0.97512 1.00013 1.71901 1.20118 1.02232 1.30077 0.92981 0.91527 0.92946 0.90862 0.90834 0.92494 0.92309 0.87692 0.87879 0.89928 0.91261 0.91255 0.83581 0.93026 0.91679 0.95018 0.93274 0.94997 0.93853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.90 9.91 71.98 0.71 -1.19 16 2 C -0.12 -1.54 5.93 30.59 0.18 -1.35 16 3 C -0.11 -1.93 5.20 30.59 0.16 -1.77 16 4 C -0.03 -0.55 5.84 29.85 0.17 -0.37 16 5 C 0.17 5.05 7.47 138.46 1.03 6.09 16 6 N -0.41 -13.59 12.16 -60.29 -0.73 -14.32 16 7 O 0.07 2.35 11.31 74.83 0.85 3.20 16 8 C 0.22 7.50 7.35 88.38 0.65 8.15 16 9 C 0.18 6.35 3.14 44.17 0.14 6.49 16 10 H 0.11 3.89 7.31 -2.39 -0.02 3.87 16 11 C -0.17 -5.11 8.88 71.98 0.64 -4.47 16 12 N -0.68 -25.93 5.50 -477.17 -2.63 -28.56 16 13 C 0.23 10.36 2.02 44.17 0.09 10.45 16 14 H 0.01 0.49 7.29 -2.38 -0.02 0.48 16 15 C -0.55 -26.55 7.25 25.60 0.19 -26.36 16 16 H 0.07 3.07 6.99 -2.91 -0.02 3.05 16 17 C 0.02 1.13 5.30 84.66 0.45 1.58 16 18 N -0.91 -49.36 11.30 21.45 0.24 -49.12 16 19 Si 0.95 40.79 29.54 68.60 2.03 42.82 16 20 H -0.26 -10.94 7.11 99.48 0.71 -10.23 16 21 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 22 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 23 C -0.10 -4.71 5.44 30.59 0.17 -4.54 16 24 C -0.13 -4.98 9.72 71.98 0.70 -4.28 16 25 N -0.51 -17.09 11.55 -303.18 -3.50 -20.59 16 26 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 27 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 30 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.10 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.08 2.83 6.36 -2.39 -0.02 2.81 16 36 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 37 H 0.07 1.94 8.12 -2.39 -0.02 1.93 16 38 H 0.35 12.79 7.97 -89.70 -0.71 12.07 16 39 H 0.26 13.57 8.31 -92.71 -0.77 12.80 16 40 H 0.06 3.36 6.00 -2.39 -0.01 3.35 16 41 H 0.03 1.42 8.14 -2.39 -0.02 1.40 16 42 H 0.05 1.89 7.84 -2.39 -0.02 1.87 16 43 H 0.03 1.27 8.14 -2.39 -0.02 1.25 16 44 H 0.04 1.55 8.14 -2.38 -0.02 1.53 16 Total: -1.00 -55.74 358.19 1.79 -53.94 By element: Atomic # 1 Polarization: 23.95 SS G_CDS: 0.26 Total: 24.21 kcal Atomic # 6 Polarization: -16.86 SS G_CDS: 5.28 Total: -11.58 kcal Atomic # 7 Polarization: -105.97 SS G_CDS: -6.62 Total: -112.59 kcal Atomic # 8 Polarization: 2.35 SS G_CDS: 0.85 Total: 3.20 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 2.03 Total: 42.82 kcal Total: -55.74 1.79 -53.94 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580090884.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.821 kcal (2) G-P(sol) polarization free energy of solvation -55.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.793 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.876 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds