Wall clock time and date at job start Tue Mar 31 2020 05:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47074 * 2 1 4 4 C 1.52999 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47163 * 180.02562 * 4 3 2 6 6 N 1.29942 * 126.28672 * 89.97727 * 5 4 3 7 7 O 1.21298 * 110.25334 * 180.02562 * 6 5 4 8 8 C 1.33645 * 109.80974 * 359.97438 * 7 6 5 9 9 C 1.50704 * 126.55129 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46491 * 165.02846 * 9 8 7 11 11 C 1.52997 * 109.47501 * 285.03150 * 9 8 7 12 12 N 1.46904 * 109.46698 * 45.03350 * 9 8 7 13 13 C 1.46898 * 110.99963 * 154.67444 * 12 9 8 14 14 H 1.09002 * 109.47004 * 36.15993 * 13 12 9 15 15 C 1.50698 * 109.47400 * 276.16201 * 13 12 9 16 16 H 1.08001 * 119.99759 * 0.02562 * 15 13 12 17 17 C 1.37874 * 120.00498 * 179.97438 * 15 13 12 18 18 N 1.31517 * 119.99581 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00294 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47019 * 60.00148 * 19 17 15 21 21 H 1.48502 * 109.46991 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46947 * 300.00241 * 19 17 15 23 23 C 1.52999 * 109.47171 * 156.15922 * 13 12 9 24 24 C 1.52994 * 109.47265 * 295.01013 * 23 13 12 25 25 N 1.31133 * 106.89773 * 0.23081 * 8 7 6 26 26 H 1.08993 * 109.46948 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46491 * 300.00014 * 1 2 3 28 28 H 1.08998 * 109.47100 * 59.99355 * 1 2 3 29 29 H 1.09003 * 109.46579 * 240.00478 * 2 1 3 30 30 H 1.08999 * 109.47029 * 120.00094 * 2 1 3 31 31 H 1.09000 * 109.47328 * 60.00055 * 3 2 1 32 32 H 1.09004 * 109.47446 * 300.00649 * 3 2 1 33 33 H 1.09004 * 109.47167 * 60.00272 * 4 3 2 34 34 H 1.08999 * 109.46911 * 300.00044 * 4 3 2 35 35 H 1.09000 * 109.47162 * 64.99555 * 11 9 8 36 36 H 1.08995 * 109.46897 * 185.00392 * 11 9 8 37 37 H 1.09006 * 109.46818 * 305.00128 * 11 9 8 38 38 H 1.00903 * 111.00303 * 30.71602 * 12 9 8 39 39 H 0.97004 * 119.99695 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.47075 * 175.00617 * 23 13 12 41 41 H 1.09005 * 109.46746 * 55.01171 * 23 13 12 42 42 H 1.08998 * 109.47560 * 55.42474 * 24 23 13 43 43 H 1.09002 * 109.47583 * 175.42513 * 24 23 13 44 44 H 1.09007 * 109.47099 * 295.42232 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0724 2.8634 0.0000 6 7 4.3288 3.5879 1.0477 7 8 4.7169 4.6874 0.7132 8 6 4.7463 4.7709 -0.6203 9 6 5.1677 5.9663 -1.4356 10 1 5.3411 5.6596 -2.4671 11 6 4.0638 7.0249 -1.3969 12 7 6.4049 6.5282 -0.8772 13 6 7.1632 7.2553 -1.9040 14 1 6.4708 7.7625 -2.5760 15 6 8.0043 6.2829 -2.6901 16 1 7.9779 5.2300 -2.4511 17 6 8.8068 6.7371 -3.7151 18 7 8.8378 8.0191 -4.0071 19 14 9.8500 5.5318 -4.6889 20 1 8.9696 4.5289 -5.3402 21 1 10.6165 6.2668 -5.7270 22 1 10.7937 4.8417 -3.7733 23 6 8.0707 8.2878 -1.2324 24 6 7.2120 9.3464 -0.5377 25 7 4.3332 3.6159 -1.0838 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 3.9515 7.3957 -0.3781 36 1 4.3290 7.8506 -2.0571 37 1 3.1243 6.5823 -1.7280 38 1 6.9698 5.8080 -0.4526 39 1 9.4027 8.3387 -4.7280 40 1 8.6974 8.7653 -1.9856 41 1 8.7024 7.7915 -0.4956 42 1 6.5278 8.8602 0.1577 43 1 7.8560 10.0356 0.0085 44 1 6.6402 9.8977 -1.2843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580090885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:39 Heat of formation + Delta-G solvation = 36.153613 kcal Electronic energy + Delta-G solvation = -22275.897903 eV Core-core repulsion = 19037.517094 eV Total energy + Delta-G solvation = -3238.380809 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -45.30099 -37.09325 -36.74703 -35.05986 -33.87439 -32.00851 -31.24118 -29.97389 -28.96475 -26.15257 -25.17607 -24.25717 -22.90652 -22.38939 -21.38773 -20.09838 -19.52758 -17.76555 -17.19744 -16.66004 -15.81207 -15.20098 -14.99098 -14.48207 -14.34716 -14.14688 -13.59658 -13.44788 -12.85629 -12.68043 -12.46548 -12.33017 -12.25742 -11.86558 -11.61875 -11.55648 -11.48740 -11.28750 -11.18000 -11.12776 -10.98063 -10.89591 -10.83665 -10.71704 -10.68326 -10.22326 -9.79743 -9.65359 -9.51239 -9.16307 -8.44157 -7.55841 -6.07993 -4.21374 1.40947 2.43623 3.13402 3.25637 3.30688 3.33960 3.73514 4.17170 4.34904 4.66251 4.70441 4.80337 4.99503 5.11544 5.20447 5.23427 5.36271 5.37791 5.52622 5.60586 5.65633 5.70111 5.79358 5.86077 5.97410 6.01139 6.07615 6.10496 6.21770 6.32305 6.35217 6.48036 6.56773 6.66997 6.99488 7.13925 7.30026 7.47463 7.69522 7.88682 7.99861 8.14421 8.39478 8.48322 8.87592 9.47197 10.92562 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.003867 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.359124 B = 7238.607777 C = 8180.090680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.114 4.114 4 C -0.026 4.026 5 C 0.164 3.836 6 N -0.395 5.395 7 O 0.085 5.915 8 C 0.203 3.797 9 C 0.178 3.822 10 H 0.097 0.903 11 C -0.136 4.136 12 N -0.677 5.677 13 C 0.216 3.784 14 H 0.041 0.959 15 C -0.553 4.553 16 H 0.053 0.947 17 C 0.072 3.928 18 N -0.882 5.882 19 Si 0.889 3.111 20 H -0.277 1.277 21 H -0.286 1.286 22 H -0.277 1.277 23 C -0.105 4.105 24 C -0.140 4.140 25 N -0.487 5.487 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.055 0.945 29 H 0.065 0.935 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.069 0.931 33 H 0.094 0.906 34 H 0.088 0.912 35 H 0.065 0.935 36 H 0.077 0.923 37 H 0.052 0.948 38 H 0.334 0.666 39 H 0.263 0.737 40 H 0.093 0.907 41 H 0.032 0.968 42 H 0.052 0.948 43 H 0.025 0.975 44 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.194 -8.925 6.515 16.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.153 4.153 4 C -0.065 4.065 5 C -0.109 4.109 6 N -0.103 5.103 7 O 0.028 5.972 8 C -0.018 4.018 9 C 0.066 3.934 10 H 0.114 0.886 11 C -0.195 4.195 12 N -0.309 5.309 13 C 0.109 3.891 14 H 0.058 0.942 15 C -0.592 4.592 16 H 0.071 0.929 17 C -0.132 4.132 18 N -0.520 5.520 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.211 1.211 22 H -0.203 1.203 23 C -0.144 4.144 24 C -0.198 4.198 25 N -0.221 5.221 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.088 0.912 33 H 0.112 0.888 34 H 0.106 0.894 35 H 0.084 0.916 36 H 0.096 0.904 37 H 0.071 0.929 38 H 0.151 0.849 39 H 0.073 0.927 40 H 0.111 0.889 41 H 0.050 0.950 42 H 0.071 0.929 43 H 0.045 0.955 44 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -12.627 -8.802 7.133 16.964 hybrid contribution 1.178 -1.276 -1.197 2.109 sum -11.449 -10.079 5.936 16.367 Atomic orbital electron populations 1.21766 0.95671 1.01609 1.01969 1.21510 0.96075 0.96133 1.02307 1.21584 0.93206 0.97559 1.02922 1.19949 0.96086 0.86032 1.04440 1.25792 1.00903 1.00302 0.83944 1.74591 1.18209 0.93307 1.24210 1.85314 1.60339 1.26502 1.25059 1.29359 0.94027 0.96602 0.81804 1.20186 0.93556 0.84985 0.94670 0.88592 1.21834 0.95829 0.98434 1.03362 1.61231 1.06322 1.29344 1.33981 1.19260 0.91242 0.91578 0.87059 0.94156 1.21791 1.26728 0.93834 1.16884 0.92905 1.24887 0.96423 0.95078 0.96768 1.69857 1.39299 1.12863 1.29967 0.86708 0.80539 0.81282 0.79828 1.20258 1.21138 1.20273 1.21488 0.98240 0.95879 0.98799 1.21736 0.99746 0.98597 0.99688 1.71934 1.18860 1.02015 1.29286 0.92679 0.92743 0.92621 0.91617 0.91803 0.91675 0.91227 0.88773 0.89366 0.91567 0.90393 0.92922 0.84908 0.92663 0.88903 0.94962 0.92940 0.95548 0.94410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.10 9.91 37.16 0.37 -0.73 16 2 C -0.12 -0.96 5.93 -26.73 -0.16 -1.12 16 3 C -0.11 -1.13 5.20 -26.73 -0.14 -1.27 16 4 C -0.03 -0.30 5.84 -27.88 -0.16 -0.46 16 5 C 0.16 2.58 7.47 -156.37 -1.17 1.41 16 6 N -0.39 -6.69 12.16 30.90 0.38 -6.31 16 7 O 0.09 1.49 11.31 18.10 0.20 1.70 16 8 C 0.20 3.55 7.00 -13.05 -0.09 3.46 16 9 C 0.18 3.17 2.97 -68.86 -0.20 2.97 16 10 H 0.10 1.90 7.59 -51.93 -0.39 1.50 16 11 C -0.14 -2.07 9.36 37.16 0.35 -1.72 16 12 N -0.68 -13.24 5.42 -102.17 -0.55 -13.80 16 13 C 0.22 4.94 1.79 -68.87 -0.12 4.82 16 14 H 0.04 1.00 7.19 -51.93 -0.37 0.63 16 15 C -0.55 -14.23 8.21 -34.44 -0.28 -14.51 16 16 H 0.05 1.37 7.76 -52.49 -0.41 0.97 16 17 C 0.07 1.89 5.29 -17.82 -0.09 1.80 16 18 N -0.88 -23.87 11.30 55.43 0.63 -23.24 16 19 Si 0.89 20.68 29.54 -169.99 -5.02 15.66 16 20 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 21 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 22 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 23 C -0.11 -2.38 5.45 -26.73 -0.15 -2.53 16 24 C -0.14 -2.70 9.85 37.15 0.37 -2.34 16 25 N -0.49 -8.56 11.55 -9.87 -0.11 -8.68 16 26 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 34 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 36 H 0.08 1.22 7.50 -51.93 -0.39 0.83 16 37 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 38 H 0.33 6.73 8.07 -39.29 -0.32 6.41 16 39 H 0.26 6.86 8.31 -40.82 -0.34 6.53 16 40 H 0.09 2.36 5.96 -51.93 -0.31 2.05 16 41 H 0.03 0.72 8.14 -51.93 -0.42 0.30 16 42 H 0.05 0.97 7.63 -51.93 -0.40 0.57 16 43 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.04 0.72 8.14 -51.93 -0.42 0.29 16 LS Contribution 360.85 15.07 5.44 5.44 Total: -1.00 -27.05 360.85 -8.17 -35.22 By element: Atomic # 1 Polarization: 11.88 SS G_CDS: -7.64 Total: 4.24 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -1.49 Total: -10.23 kcal Atomic # 7 Polarization: -52.36 SS G_CDS: 0.33 Total: -52.02 kcal Atomic # 8 Polarization: 1.49 SS G_CDS: 0.20 Total: 1.70 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -27.05 -8.17 -35.22 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580090885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.373 kcal (2) G-P(sol) polarization free energy of solvation -27.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.220 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds