Wall clock time and date at job start Tue Mar 31 2020 05:31:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52999 * 109.47074 * 2 1 4 4 C 1.52999 * 109.47111 * 180.02562 * 3 2 1 5 5 C 1.50704 * 109.47163 * 180.02562 * 4 3 2 6 6 N 1.29942 * 126.28672 * 89.97727 * 5 4 3 7 7 O 1.21298 * 110.25334 * 180.02562 * 6 5 4 8 8 C 1.33645 * 109.80974 * 359.97438 * 7 6 5 9 9 C 1.50704 * 126.55129 * 179.97438 * 8 7 6 10 10 H 1.09001 * 109.46491 * 165.02846 * 9 8 7 11 11 C 1.52997 * 109.47501 * 285.03150 * 9 8 7 12 12 N 1.46904 * 109.46698 * 45.03350 * 9 8 7 13 13 C 1.46898 * 110.99963 * 154.67444 * 12 9 8 14 14 H 1.09002 * 109.47004 * 36.15993 * 13 12 9 15 15 C 1.50698 * 109.47400 * 276.16201 * 13 12 9 16 16 H 1.08001 * 119.99759 * 0.02562 * 15 13 12 17 17 C 1.37874 * 120.00498 * 179.97438 * 15 13 12 18 18 N 1.31517 * 119.99581 * 359.97438 * 17 15 13 19 19 Si 1.86800 * 120.00294 * 179.97438 * 17 15 13 20 20 H 1.48497 * 109.47019 * 60.00148 * 19 17 15 21 21 H 1.48502 * 109.46991 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46947 * 300.00241 * 19 17 15 23 23 C 1.52999 * 109.47171 * 156.15922 * 13 12 9 24 24 C 1.52994 * 109.47265 * 295.01013 * 23 13 12 25 25 N 1.31133 * 106.89773 * 0.23081 * 8 7 6 26 26 H 1.08993 * 109.46948 * 179.97438 * 1 2 3 27 27 H 1.08999 * 109.46491 * 300.00014 * 1 2 3 28 28 H 1.08998 * 109.47100 * 59.99355 * 1 2 3 29 29 H 1.09003 * 109.46579 * 240.00478 * 2 1 3 30 30 H 1.08999 * 109.47029 * 120.00094 * 2 1 3 31 31 H 1.09000 * 109.47328 * 60.00055 * 3 2 1 32 32 H 1.09004 * 109.47446 * 300.00649 * 3 2 1 33 33 H 1.09004 * 109.47167 * 60.00272 * 4 3 2 34 34 H 1.08999 * 109.46911 * 300.00044 * 4 3 2 35 35 H 1.09000 * 109.47162 * 64.99555 * 11 9 8 36 36 H 1.08995 * 109.46897 * 185.00392 * 11 9 8 37 37 H 1.09006 * 109.46818 * 305.00128 * 11 9 8 38 38 H 1.00903 * 111.00303 * 30.71602 * 12 9 8 39 39 H 0.97004 * 119.99695 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.47075 * 175.00617 * 23 13 12 41 41 H 1.09005 * 109.46746 * 55.01171 * 23 13 12 42 42 H 1.08998 * 109.47560 * 55.42474 * 24 23 13 43 43 H 1.09002 * 109.47583 * 175.42513 * 24 23 13 44 44 H 1.09007 * 109.47099 * 295.42232 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4425 -0.0006 5 6 4.0724 2.8634 0.0000 6 7 4.3288 3.5879 1.0477 7 8 4.7169 4.6874 0.7132 8 6 4.7463 4.7709 -0.6203 9 6 5.1677 5.9663 -1.4356 10 1 5.3411 5.6596 -2.4671 11 6 4.0638 7.0249 -1.3969 12 7 6.4049 6.5282 -0.8772 13 6 7.1632 7.2553 -1.9040 14 1 6.4708 7.7625 -2.5760 15 6 8.0043 6.2829 -2.6901 16 1 7.9779 5.2300 -2.4511 17 6 8.8068 6.7371 -3.7151 18 7 8.8378 8.0191 -4.0071 19 14 9.8500 5.5318 -4.6889 20 1 8.9696 4.5289 -5.3402 21 1 10.6165 6.2668 -5.7270 22 1 10.7937 4.8417 -3.7733 23 6 8.0707 8.2878 -1.2324 24 6 7.2120 9.3464 -0.5377 25 7 4.3332 3.6159 -1.0838 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3632 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6766 1.9564 -0.8899 33 1 3.9330 0.9288 -0.8909 34 1 3.9337 0.9285 0.8891 35 1 3.9515 7.3957 -0.3781 36 1 4.3290 7.8506 -2.0571 37 1 3.1243 6.5823 -1.7280 38 1 6.9698 5.8080 -0.4526 39 1 9.4027 8.3387 -4.7280 40 1 8.6974 8.7653 -1.9856 41 1 8.7024 7.7915 -0.4956 42 1 6.5278 8.8602 0.1577 43 1 7.8560 10.0356 0.0085 44 1 6.6402 9.8977 -1.2843 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580090885.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:39 Heat of formation + Delta-G solvation = 20.191471 kcal Electronic energy + Delta-G solvation = -22276.590074 eV Core-core repulsion = 19037.517094 eV Total energy + Delta-G solvation = -3239.072980 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -46.62404 -38.72527 -37.76893 -36.22717 -35.40916 -33.68959 -32.69691 -30.98439 -30.45419 -27.96502 -26.10097 -25.74073 -24.49909 -23.69716 -22.11696 -21.52844 -21.19853 -19.10005 -18.82982 -18.29110 -17.01278 -16.74817 -16.26457 -16.07334 -15.46405 -15.30066 -14.90777 -14.61866 -14.28634 -13.91856 -13.84904 -13.58144 -13.43239 -13.25048 -13.12541 -12.97301 -12.82190 -12.70542 -12.53164 -12.45589 -12.32367 -12.08884 -12.07599 -12.03376 -11.90157 -11.50542 -11.48021 -11.43816 -11.05522 -10.86453 -10.44009 -9.28033 -8.07630 -6.27926 0.05312 1.14672 1.39041 1.40878 1.47205 1.74166 2.39689 2.51956 2.95571 3.14564 3.54769 3.77302 3.92761 4.00662 4.12202 4.25102 4.36744 4.44279 4.49449 4.67036 4.67502 4.74357 4.78371 4.82074 4.85169 4.92351 4.96290 4.99717 5.02436 5.04297 5.20126 5.22605 5.28533 5.33156 5.43797 5.50106 5.52612 5.63767 5.78970 6.08108 6.10375 6.28839 6.61293 6.91725 7.10970 7.43103 8.89703 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019103 B = 0.003867 C = 0.003422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1465.359124 B = 7238.607777 C = 8180.090680 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.107 4.107 4 C -0.027 4.027 5 C 0.168 3.832 6 N -0.406 5.406 7 O 0.077 5.923 8 C 0.202 3.798 9 C 0.182 3.818 10 H 0.074 0.926 11 C -0.128 4.128 12 N -0.665 5.665 13 C 0.225 3.775 14 H 0.022 0.978 15 C -0.565 4.565 16 H 0.044 0.956 17 C 0.029 3.971 18 N -0.904 5.904 19 Si 0.942 3.058 20 H -0.277 1.277 21 H -0.281 1.281 22 H -0.276 1.276 23 C -0.102 4.102 24 C -0.128 4.128 25 N -0.503 5.503 26 H 0.066 0.934 27 H 0.053 0.947 28 H 0.051 0.949 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.103 0.897 34 H 0.104 0.896 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.330 0.670 39 H 0.264 0.736 40 H 0.064 0.936 41 H 0.026 0.974 42 H 0.062 0.938 43 H 0.042 0.958 44 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.011 -10.073 7.111 17.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.156 4.156 3 C -0.146 4.146 4 C -0.066 4.066 5 C -0.105 4.105 6 N -0.116 5.116 7 O 0.022 5.978 8 C -0.019 4.019 9 C 0.070 3.930 10 H 0.092 0.908 11 C -0.187 4.187 12 N -0.296 5.296 13 C 0.117 3.883 14 H 0.039 0.961 15 C -0.604 4.604 16 H 0.062 0.938 17 C -0.172 4.172 18 N -0.542 5.542 19 Si 0.769 3.231 20 H -0.202 1.202 21 H -0.207 1.207 22 H -0.202 1.202 23 C -0.141 4.141 24 C -0.186 4.186 25 N -0.238 5.238 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.122 0.878 34 H 0.123 0.877 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.088 0.912 38 H 0.147 0.853 39 H 0.073 0.927 40 H 0.082 0.918 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.061 0.939 44 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -13.450 -9.937 7.739 18.426 hybrid contribution 1.401 -0.975 -1.370 2.188 sum -12.049 -10.911 6.369 17.458 Atomic orbital electron populations 1.21775 0.95235 1.02312 1.01776 1.21491 0.96411 0.94557 1.03126 1.21532 0.91962 0.99000 1.02084 1.20222 0.97052 0.83647 1.05693 1.26532 0.99461 1.01499 0.82999 1.74586 1.19089 0.93327 1.24622 1.85300 1.60706 1.26981 1.24792 1.29174 0.94247 0.96493 0.81985 1.20125 0.93496 0.85964 0.93443 0.90786 1.21783 0.95498 0.97469 1.03916 1.61172 1.06394 1.29294 1.32742 1.19020 0.90729 0.91343 0.87204 0.96056 1.22083 1.27076 0.93926 1.17363 0.93790 1.25513 0.97544 0.96392 0.97742 1.69962 1.39901 1.13979 1.30347 0.85866 0.79136 0.79490 0.78657 1.20237 1.20673 1.20165 1.21358 0.98245 0.96518 0.97998 1.21601 0.99531 0.97846 0.99599 1.71955 1.19374 1.02282 1.30209 0.91539 0.92826 0.92984 0.90996 0.90789 0.92275 0.92315 0.87845 0.87722 0.90634 0.90853 0.91170 0.85299 0.92711 0.91762 0.95524 0.91946 0.93864 0.94485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.92 9.91 71.98 0.71 -1.21 16 2 C -0.12 -1.58 5.93 30.60 0.18 -1.40 16 3 C -0.11 -1.95 5.20 30.59 0.16 -1.79 16 4 C -0.03 -0.58 5.84 29.85 0.17 -0.41 16 5 C 0.17 5.11 7.47 138.46 1.03 6.14 16 6 N -0.41 -13.35 12.16 -60.33 -0.73 -14.08 16 7 O 0.08 2.63 11.31 74.82 0.85 3.48 16 8 C 0.20 6.97 7.00 88.38 0.62 7.59 16 9 C 0.18 6.45 2.97 44.17 0.13 6.58 16 10 H 0.07 2.98 7.59 -2.39 -0.02 2.97 16 11 C -0.13 -3.78 9.36 71.98 0.67 -3.11 16 12 N -0.67 -25.99 5.42 -477.16 -2.59 -28.58 16 13 C 0.23 10.42 1.79 44.17 0.08 10.50 16 14 H 0.02 1.08 7.19 -2.39 -0.02 1.06 16 15 C -0.57 -29.42 8.21 25.60 0.21 -29.21 16 16 H 0.04 2.32 7.76 -2.91 -0.02 2.29 16 17 C 0.03 1.55 5.29 84.65 0.45 2.00 16 18 N -0.90 -49.44 11.30 21.45 0.24 -49.20 16 19 Si 0.94 42.58 29.54 68.60 2.03 44.60 16 20 H -0.28 -12.42 7.11 99.48 0.71 -11.71 16 21 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 22 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 23 C -0.10 -4.64 5.45 30.59 0.17 -4.47 16 24 C -0.13 -4.80 9.85 71.98 0.71 -4.09 16 25 N -0.50 -17.38 11.55 -303.20 -3.50 -20.89 16 26 H 0.07 0.69 8.14 -2.39 -0.02 0.67 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.89 8.14 -2.39 -0.02 0.87 16 30 H 0.07 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 33 H 0.10 2.01 8.14 -2.38 -0.02 2.00 16 34 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 35 H 0.07 2.09 8.14 -2.39 -0.02 2.07 16 36 H 0.07 2.24 7.50 -2.39 -0.02 2.22 16 37 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 38 H 0.33 13.35 8.07 -89.69 -0.72 12.63 16 39 H 0.26 13.84 8.31 -92.71 -0.77 13.07 16 40 H 0.06 3.30 5.96 -2.39 -0.01 3.29 16 41 H 0.03 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.06 2.20 7.63 -2.39 -0.02 2.18 16 43 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 44 H 0.04 1.37 8.14 -2.38 -0.02 1.35 16 Total: -1.00 -57.09 360.85 1.84 -55.25 By element: Atomic # 1 Polarization: 22.05 SS G_CDS: 0.25 Total: 22.30 kcal Atomic # 6 Polarization: -18.19 SS G_CDS: 5.30 Total: -12.89 kcal Atomic # 7 Polarization: -106.16 SS G_CDS: -6.58 Total: -112.74 kcal Atomic # 8 Polarization: 2.63 SS G_CDS: 0.85 Total: 3.48 kcal Atomic # 14 Polarization: 42.58 SS G_CDS: 2.03 Total: 44.60 kcal Total: -57.09 1.84 -55.25 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580090885.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.441 kcal (2) G-P(sol) polarization free energy of solvation -57.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.250 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds