Wall clock time and date at job start Tue Mar 31 2020 05:31:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52998 * 109.47262 * 2 1 4 4 C 1.52998 * 109.47072 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47449 * 180.02562 * 4 3 2 6 6 N 1.29953 * 126.28503 * 270.02569 * 5 4 3 7 7 O 1.21299 * 110.24544 * 179.68162 * 6 5 4 8 8 C 1.33640 * 109.81521 * 0.46485 * 7 6 5 9 9 C 1.50704 * 126.55231 * 179.79945 * 8 7 6 10 10 H 1.08999 * 109.47275 * 194.69560 * 9 8 7 11 11 C 1.52994 * 109.47132 * 74.68859 * 9 8 7 12 12 N 1.46900 * 109.46948 * 314.69021 * 9 8 7 13 13 C 1.46900 * 111.00043 * 207.33502 * 12 9 8 14 14 H 1.08999 * 109.47042 * 30.61902 * 13 12 9 15 15 C 1.50711 * 109.47061 * 270.62419 * 13 12 9 16 16 H 1.08004 * 119.99695 * 359.97438 * 15 13 12 17 17 C 1.37873 * 119.99918 * 179.97438 * 15 13 12 18 18 N 1.31522 * 119.99999 * 359.97438 * 17 15 13 19 19 Si 1.86797 * 120.00048 * 179.97438 * 17 15 13 20 20 H 1.48499 * 109.47121 * 59.99743 * 19 17 15 21 21 H 1.48503 * 109.47125 * 179.97438 * 19 17 15 22 22 H 1.48501 * 109.47191 * 300.00141 * 19 17 15 23 23 C 1.52999 * 109.47158 * 150.62401 * 13 12 9 24 24 C 1.52997 * 109.46867 * 294.25229 * 23 13 12 25 25 N 1.31126 * 106.89534 * 359.54469 * 8 7 6 26 26 H 1.09002 * 109.47353 * 59.99437 * 1 2 3 27 27 H 1.08996 * 109.47517 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.46602 * 300.00441 * 1 2 3 29 29 H 1.09005 * 109.46598 * 240.00112 * 2 1 3 30 30 H 1.09000 * 109.46892 * 120.00306 * 2 1 3 31 31 H 1.08998 * 109.46987 * 60.00156 * 3 2 1 32 32 H 1.09000 * 109.47417 * 299.99984 * 3 2 1 33 33 H 1.08997 * 109.47322 * 59.99523 * 4 3 2 34 34 H 1.09000 * 109.46757 * 300.00107 * 4 3 2 35 35 H 1.09005 * 109.47032 * 59.99961 * 11 9 8 36 36 H 1.08995 * 109.47483 * 180.02562 * 11 9 8 37 37 H 1.08999 * 109.47612 * 300.00495 * 11 9 8 38 38 H 1.00898 * 111.00541 * 331.29063 * 12 9 8 39 39 H 0.96993 * 119.99778 * 179.97438 * 18 17 15 40 40 H 1.08996 * 109.47034 * 54.26007 * 23 13 12 41 41 H 1.09004 * 109.46629 * 174.25722 * 23 13 12 42 42 H 1.08991 * 109.47732 * 296.54755 * 24 23 13 43 43 H 1.08998 * 109.46792 * 56.54944 * 24 23 13 44 44 H 1.09006 * 109.46985 * 176.54239 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0725 2.8631 0.0000 6 7 4.3280 3.5890 -1.0472 7 8 4.7110 4.6899 -0.7116 8 6 4.7466 4.7701 0.6219 9 6 5.1692 5.9643 1.4383 10 1 5.3435 5.6564 2.4693 11 6 4.0657 7.0234 1.4018 12 7 6.4061 6.5265 0.8796 13 6 7.1888 7.2112 1.9171 14 1 7.0167 6.7292 2.8794 15 6 6.7646 8.6552 1.9954 16 1 5.9911 9.0271 1.3397 17 6 7.3638 9.5014 2.9041 18 7 8.3053 9.0483 3.7029 19 14 6.8385 11.2914 3.0008 20 1 5.3945 11.3659 3.3393 21 1 7.6288 11.9832 4.0506 22 1 7.0740 11.9479 1.6898 23 6 8.6763 7.1349 1.5672 24 6 9.1405 5.6783 1.6281 25 7 4.3383 3.6130 1.0843 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 1.8933 -0.5139 -0.8901 30 1 1.8933 -0.5139 0.8900 31 1 1.6768 1.9563 0.8900 32 1 1.6768 1.9563 -0.8900 33 1 3.9330 0.9286 -0.8908 34 1 3.9337 0.9284 0.8891 35 1 3.1479 6.6062 1.8164 36 1 4.3715 7.8873 1.9918 37 1 3.8914 7.3313 0.3708 38 1 6.9549 5.8122 0.4249 39 1 8.7271 9.6437 4.3419 40 1 8.8335 7.5248 0.5616 41 1 9.2481 7.7286 2.2805 42 1 9.0405 5.3074 2.6480 43 1 8.5275 5.0735 0.9598 44 1 10.1841 5.6163 1.3195 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580090886.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:41 Heat of formation + Delta-G solvation = 25.216345 kcal Electronic energy + Delta-G solvation = -22260.975220 eV Core-core repulsion = 19022.120135 eV Total energy + Delta-G solvation = -3238.855085 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -46.64883 -38.85572 -37.77833 -36.24459 -35.38505 -33.76470 -32.77626 -30.96317 -30.11087 -28.47532 -26.11094 -25.55199 -24.57960 -23.78209 -22.11971 -21.57016 -21.31300 -19.11682 -18.47897 -18.33202 -17.16345 -16.71611 -16.31008 -15.94348 -15.51463 -15.48040 -14.90854 -14.53556 -14.28701 -14.20924 -13.95497 -13.58692 -13.43517 -13.40839 -13.05050 -12.90351 -12.78929 -12.66914 -12.53015 -12.44781 -12.32362 -12.10043 -12.06258 -11.91365 -11.82980 -11.54827 -11.51269 -11.49847 -11.03700 -10.91523 -10.36517 -9.24092 -8.01251 -6.10836 0.01869 1.12091 1.49326 1.50485 1.57118 1.70594 2.44773 2.52473 2.94315 3.25622 3.51364 3.76016 3.92964 4.00739 4.11945 4.23414 4.29495 4.43693 4.48988 4.49987 4.53379 4.67722 4.68915 4.74398 4.77620 4.83581 4.91926 4.99238 5.01920 5.04664 5.08881 5.17189 5.23003 5.31728 5.33605 5.44236 5.44370 5.56400 5.79778 5.89168 6.28947 6.41948 6.75897 7.00145 7.08374 7.56767 9.02662 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.027780 B = 0.003405 C = 0.003197 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1007.663764 B = 8221.106320 C = 8754.901380 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.118 4.118 3 C -0.109 4.109 4 C -0.027 4.027 5 C 0.170 3.830 6 N -0.405 5.405 7 O 0.074 5.926 8 C 0.198 3.802 9 C 0.189 3.811 10 H 0.076 0.924 11 C -0.132 4.132 12 N -0.672 5.672 13 C 0.226 3.774 14 H -0.016 1.016 15 C -0.502 4.502 16 H 0.064 0.936 17 C 0.011 3.989 18 N -0.921 5.921 19 Si 0.951 3.049 20 H -0.271 1.271 21 H -0.291 1.291 22 H -0.276 1.276 23 C -0.124 4.124 24 C -0.141 4.141 25 N -0.499 5.499 26 H 0.051 0.949 27 H 0.066 0.934 28 H 0.051 0.949 29 H 0.074 0.926 30 H 0.073 0.927 31 H 0.058 0.942 32 H 0.056 0.944 33 H 0.106 0.894 34 H 0.107 0.893 35 H 0.067 0.933 36 H 0.078 0.922 37 H 0.064 0.936 38 H 0.330 0.670 39 H 0.259 0.741 40 H 0.040 0.960 41 H 0.074 0.926 42 H 0.039 0.961 43 H 0.046 0.954 44 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.384 -15.185 -5.876 19.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.155 4.155 3 C -0.147 4.147 4 C -0.066 4.066 5 C -0.103 4.103 6 N -0.116 5.116 7 O 0.020 5.980 8 C -0.023 4.023 9 C 0.077 3.923 10 H 0.094 0.906 11 C -0.191 4.191 12 N -0.306 5.306 13 C 0.118 3.882 14 H 0.002 0.998 15 C -0.541 4.541 16 H 0.082 0.918 17 C -0.187 4.187 18 N -0.561 5.561 19 Si 0.778 3.222 20 H -0.196 1.196 21 H -0.217 1.217 22 H -0.201 1.201 23 C -0.163 4.163 24 C -0.198 4.198 25 N -0.234 5.234 26 H 0.070 0.930 27 H 0.085 0.915 28 H 0.070 0.930 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.077 0.923 32 H 0.075 0.925 33 H 0.124 0.876 34 H 0.125 0.875 35 H 0.086 0.914 36 H 0.097 0.903 37 H 0.084 0.916 38 H 0.149 0.851 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.092 0.908 42 H 0.058 0.942 43 H 0.065 0.935 44 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -10.768 -15.127 -6.470 19.663 hybrid contribution 0.515 0.664 0.828 1.180 sum -10.253 -14.463 -5.641 18.605 Atomic orbital electron populations 1.21782 0.95382 1.02303 1.01719 1.21485 0.96294 0.94523 1.03206 1.21542 0.92159 0.99018 1.02022 1.20232 0.96870 0.83539 1.05909 1.26560 0.99272 1.01509 0.82940 1.74618 1.19134 0.93162 1.24693 1.85317 1.60891 1.26951 1.24815 1.29212 0.94627 0.96403 0.82073 1.20166 0.93617 0.85524 0.92960 0.90595 1.21844 0.95467 0.98330 1.03419 1.60908 1.06490 1.31109 1.32136 1.19101 0.89421 0.93040 0.86594 0.99809 1.21453 1.19904 0.94730 1.17984 0.91779 1.25625 0.95356 1.02075 0.95623 1.69985 1.26639 1.36604 1.22889 0.85717 0.78342 0.80796 0.77376 1.19615 1.21677 1.20103 1.21665 0.98483 0.95686 1.00480 1.21765 1.00775 0.97082 1.00199 1.71943 1.19176 1.02140 1.30122 0.92962 0.91516 0.93008 0.90765 0.90814 0.92328 0.92476 0.87616 0.87482 0.91442 0.90273 0.91649 0.85103 0.93193 0.94145 0.90765 0.94227 0.93533 0.92221 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.85 9.91 71.98 0.71 -1.14 16 2 C -0.12 -1.46 5.93 30.59 0.18 -1.27 16 3 C -0.11 -1.88 5.20 30.59 0.16 -1.72 16 4 C -0.03 -0.52 5.84 29.85 0.17 -0.35 16 5 C 0.17 4.89 7.47 138.46 1.03 5.93 16 6 N -0.41 -12.95 12.16 -60.33 -0.73 -13.69 16 7 O 0.07 2.52 11.31 74.86 0.85 3.37 16 8 C 0.20 6.64 6.98 88.38 0.62 7.26 16 9 C 0.19 6.77 3.17 44.17 0.14 6.91 16 10 H 0.08 2.88 7.34 -2.39 -0.02 2.86 16 11 C -0.13 -4.45 9.11 71.98 0.66 -3.79 16 12 N -0.67 -26.71 6.16 -477.15 -2.94 -29.65 16 13 C 0.23 10.56 2.03 44.17 0.09 10.65 16 14 H -0.02 -0.80 7.32 -2.39 -0.02 -0.82 16 15 C -0.50 -25.75 7.44 25.60 0.19 -25.56 16 16 H 0.06 3.27 7.02 -2.91 -0.02 3.25 16 17 C 0.01 0.60 5.29 84.65 0.45 1.05 16 18 N -0.92 -50.77 11.30 21.45 0.24 -50.53 16 19 Si 0.95 42.26 29.54 68.60 2.03 44.29 16 20 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 21 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 22 H -0.28 -12.10 7.11 99.48 0.71 -11.39 16 23 C -0.12 -5.60 5.33 30.59 0.16 -5.44 16 24 C -0.14 -5.17 9.81 71.98 0.71 -4.47 16 25 N -0.50 -16.21 11.55 -303.21 -3.50 -19.71 16 26 H 0.05 0.64 8.14 -2.39 -0.02 0.63 16 27 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.05 0.66 8.14 -2.39 -0.02 0.64 16 29 H 0.07 0.79 8.14 -2.38 -0.02 0.77 16 30 H 0.07 0.81 8.14 -2.39 -0.02 0.80 16 31 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 33 H 0.11 1.72 8.14 -2.39 -0.02 1.70 16 34 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 36 H 0.08 3.01 6.22 -2.39 -0.01 3.00 16 37 H 0.06 2.13 8.14 -2.39 -0.02 2.11 16 38 H 0.33 12.34 6.05 -89.70 -0.54 11.80 16 39 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 40 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 41 H 0.07 3.82 5.94 -2.38 -0.01 3.80 16 42 H 0.04 1.48 8.14 -2.39 -0.02 1.46 16 43 H 0.05 1.56 6.41 -2.39 -0.02 1.54 16 44 H 0.06 1.94 8.14 -2.38 -0.02 1.92 16 Total: -1.00 -57.22 355.42 1.65 -55.58 By element: Atomic # 1 Polarization: 21.84 SS G_CDS: 0.44 Total: 22.27 kcal Atomic # 6 Polarization: -17.20 SS G_CDS: 5.27 Total: -11.93 kcal Atomic # 7 Polarization: -106.65 SS G_CDS: -6.93 Total: -113.58 kcal Atomic # 8 Polarization: 2.52 SS G_CDS: 0.85 Total: 3.37 kcal Atomic # 14 Polarization: 42.26 SS G_CDS: 2.03 Total: 44.29 kcal Total: -57.22 1.65 -55.58 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580090886.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.792 kcal (2) G-P(sol) polarization free energy of solvation -57.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.568 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.649 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.216 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds