Wall clock time and date at job start Tue Mar 31 2020 05:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47033 * 2 1 4 4 C 1.53000 * 109.47033 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47011 * 179.97438 * 4 3 2 6 6 N 1.29945 * 126.28623 * 270.02476 * 5 4 3 7 7 O 1.21301 * 110.24946 * 179.68305 * 6 5 4 8 8 C 1.33644 * 109.81141 * 0.46869 * 7 6 5 9 9 C 1.50696 * 126.54977 * 179.79921 * 8 7 6 10 10 H 1.09003 * 109.46976 * 194.68781 * 9 8 7 11 11 C 1.52996 * 109.47392 * 74.69299 * 9 8 7 12 12 N 1.46896 * 109.47383 * 314.68811 * 9 8 7 13 13 C 1.46900 * 111.00201 * 208.42340 * 12 9 8 14 14 H 1.09001 * 109.46959 * 324.89445 * 13 12 9 15 15 C 1.50698 * 109.47232 * 84.88986 * 13 12 9 16 16 H 1.08001 * 120.00175 * 4.30902 * 15 13 12 17 17 C 1.37881 * 120.00212 * 184.30465 * 15 13 12 18 18 N 1.31518 * 119.99480 * 8.04659 * 17 15 13 19 19 Si 1.86791 * 120.00332 * 188.04383 * 17 15 13 20 20 H 1.48500 * 109.47104 * 60.00165 * 19 17 15 21 21 H 1.48495 * 109.47624 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47163 * 300.00400 * 19 17 15 23 23 C 1.52997 * 109.47265 * 204.89226 * 13 12 9 24 24 C 1.53010 * 109.47020 * 65.43008 * 23 13 12 25 25 N 1.31130 * 106.89415 * 359.54037 * 8 7 6 26 26 H 1.09000 * 109.46838 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46975 * 299.99822 * 1 2 3 28 28 H 1.09001 * 109.46906 * 60.00254 * 1 2 3 29 29 H 1.08998 * 109.47443 * 240.00264 * 2 1 3 30 30 H 1.09002 * 109.47426 * 119.99757 * 2 1 3 31 31 H 1.08998 * 109.46791 * 59.99865 * 3 2 1 32 32 H 1.09002 * 109.46816 * 300.00130 * 3 2 1 33 33 H 1.08998 * 109.47443 * 60.00264 * 4 3 2 34 34 H 1.09002 * 109.47426 * 299.99757 * 4 3 2 35 35 H 1.09004 * 109.47247 * 62.94290 * 11 9 8 36 36 H 1.09001 * 109.47502 * 182.94843 * 11 9 8 37 37 H 1.09003 * 109.47177 * 302.94875 * 11 9 8 38 38 H 1.00894 * 110.99744 * 84.46897 * 12 9 8 39 39 H 0.96995 * 120.00319 * 2.41884 * 18 17 15 40 40 H 1.09001 * 109.47308 * 185.42439 * 23 13 12 41 41 H 1.08999 * 109.47341 * 305.42952 * 23 13 12 42 42 H 1.08999 * 109.46968 * 174.41113 * 24 23 13 43 43 H 1.08999 * 109.46800 * 294.40842 * 24 23 13 44 44 H 1.08997 * 109.46811 * 54.40783 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8634 -0.0013 6 7 4.3278 3.5883 -1.0491 7 8 4.7107 4.6896 -0.7145 8 6 4.7463 4.7709 0.6190 9 6 5.1689 5.9659 1.4342 10 1 5.3431 5.6589 2.4655 11 6 4.0652 7.0248 1.3970 12 7 6.4056 6.5277 0.8750 13 6 7.2007 7.1911 1.9170 14 1 6.5333 7.6649 2.6368 15 6 8.0566 6.1705 2.6219 16 1 8.0667 5.1459 2.2806 17 6 8.8269 6.5448 3.7025 18 7 8.6973 7.7482 4.2170 19 14 10.0544 5.3428 4.4356 20 1 11.0490 4.9588 3.4020 21 1 10.7512 5.9830 5.5800 22 1 9.3384 4.1306 4.9081 23 6 8.0966 8.2530 1.2763 24 6 7.2269 9.3602 0.6774 25 7 4.3381 3.6142 1.0824 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9289 -0.8908 34 1 3.9338 0.9286 0.8891 35 1 3.1626 6.6253 1.8595 36 1 4.3921 7.9098 1.9429 37 1 3.8544 7.2937 0.3619 38 1 6.2041 7.1609 0.1159 39 1 8.0354 8.3601 3.8588 40 1 8.7552 8.6780 2.0338 41 1 8.6960 7.7958 0.4889 42 1 7.8645 10.1640 0.3093 43 1 6.6401 8.9554 -0.1472 44 1 6.5566 9.7500 1.4434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000580090887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:44 Heat of formation + Delta-G solvation = 34.974011 kcal Electronic energy + Delta-G solvation = -22321.005570 eV Core-core repulsion = 19082.573609 eV Total energy + Delta-G solvation = -3238.431961 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -45.21121 -37.48609 -36.70092 -35.06086 -34.14126 -32.08768 -31.37877 -29.95995 -28.80675 -25.85575 -25.13607 -24.33446 -23.02864 -22.60334 -21.38630 -20.20748 -20.00113 -17.72543 -17.02963 -16.79871 -15.86672 -15.36722 -15.02131 -14.43130 -14.23862 -14.12576 -13.73293 -13.41392 -13.21189 -12.74919 -12.62979 -12.48351 -12.32059 -12.23091 -11.89399 -11.72547 -11.52907 -11.35120 -11.24899 -11.13649 -10.93949 -10.82593 -10.74837 -10.63361 -10.57208 -10.15938 -10.07508 -10.01144 -9.52777 -8.81730 -8.40612 -7.58655 -6.35587 -4.07288 1.50155 2.52345 3.22152 3.46090 3.47177 3.65737 3.77870 4.21221 4.52106 4.68239 4.72945 4.82732 4.96244 5.11462 5.22051 5.26643 5.33031 5.36477 5.39746 5.49662 5.55887 5.67854 5.72414 5.83206 5.86619 5.88076 5.89599 6.00565 6.03313 6.05331 6.11265 6.13608 6.20655 6.35903 6.54817 6.68373 6.77026 7.01476 7.27737 7.78433 7.93766 8.31141 8.51027 8.59890 8.86422 9.61575 10.99711 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.003917 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.014870 B = 7146.555630 C = 8094.562639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.123 4.123 3 C -0.114 4.114 4 C -0.026 4.026 5 C 0.165 3.835 6 N -0.397 5.397 7 O 0.077 5.923 8 C 0.224 3.776 9 C 0.178 3.822 10 H 0.129 0.871 11 C -0.177 4.177 12 N -0.673 5.673 13 C 0.211 3.789 14 H 0.001 0.999 15 C -0.583 4.583 16 H 0.055 0.945 17 C 0.021 3.979 18 N -0.912 5.912 19 Si 1.065 2.935 20 H -0.288 1.288 21 H -0.284 1.284 22 H -0.289 1.289 23 C -0.129 4.129 24 C -0.155 4.155 25 N -0.489 5.489 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.063 0.937 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.060 0.940 38 H 0.328 0.672 39 H 0.269 0.731 40 H 0.076 0.924 41 H 0.055 0.945 42 H 0.043 0.957 43 H 0.043 0.957 44 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.988 -7.257 -7.632 16.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.160 4.160 3 C -0.152 4.152 4 C -0.065 4.065 5 C -0.108 4.108 6 N -0.107 5.107 7 O 0.021 5.979 8 C 0.003 3.997 9 C 0.065 3.935 10 H 0.147 0.853 11 C -0.237 4.237 12 N -0.305 5.305 13 C 0.104 3.896 14 H 0.019 0.981 15 C -0.622 4.622 16 H 0.074 0.926 17 C -0.183 4.183 18 N -0.549 5.549 19 Si 0.893 3.107 20 H -0.215 1.215 21 H -0.209 1.209 22 H -0.215 1.215 23 C -0.167 4.167 24 C -0.212 4.212 25 N -0.223 5.223 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.082 0.918 30 H 0.084 0.916 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.106 0.894 34 H 0.112 0.888 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.079 0.921 38 H 0.147 0.853 39 H 0.080 0.920 40 H 0.094 0.906 41 H 0.074 0.926 42 H 0.062 0.938 43 H 0.062 0.938 44 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -11.651 -8.591 -6.914 16.042 hybrid contribution -1.516 1.088 -1.085 2.158 sum -13.167 -7.503 -7.998 17.136 Atomic orbital electron populations 1.21765 0.95710 1.01597 1.01925 1.21510 0.96028 0.96167 1.02337 1.21580 0.93286 0.97522 1.02835 1.19938 0.95978 0.86119 1.04447 1.25753 1.00760 1.00308 0.83978 1.74557 1.18578 0.93290 1.24261 1.85249 1.60809 1.26554 1.25321 1.29155 0.92561 0.96592 0.81409 1.20010 0.90365 0.86552 0.96611 0.85333 1.22518 0.98964 0.99578 1.02647 1.60482 1.15653 1.41474 1.12876 1.19344 0.90853 0.91951 0.87402 0.98107 1.21946 1.28313 0.96541 1.15358 0.92618 1.25735 0.98999 0.99199 0.94367 1.70830 1.34995 1.07146 1.41899 0.83596 0.76078 0.74800 0.76201 1.21454 1.20904 1.21503 1.21837 0.99247 0.95325 1.00325 1.21916 1.00097 0.99276 0.99921 1.71886 1.19310 1.01897 1.29222 0.92682 0.92634 0.92787 0.91804 0.91581 0.91261 0.91754 0.89412 0.88753 0.91792 0.90411 0.92085 0.85253 0.91981 0.90578 0.92648 0.93782 0.93849 0.93614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.91 37.16 0.37 -0.75 16 2 C -0.12 -0.99 5.93 -26.73 -0.16 -1.15 16 3 C -0.11 -1.16 5.20 -26.73 -0.14 -1.30 16 4 C -0.03 -0.31 5.84 -27.88 -0.16 -0.47 16 5 C 0.17 2.72 7.47 -156.37 -1.17 1.55 16 6 N -0.40 -6.99 12.16 30.90 0.38 -6.62 16 7 O 0.08 1.39 11.31 18.10 0.20 1.60 16 8 C 0.22 4.08 7.35 -13.06 -0.10 3.98 16 9 C 0.18 3.20 2.92 -68.87 -0.20 2.99 16 10 H 0.13 2.61 7.60 -51.93 -0.39 2.22 16 11 C -0.18 -2.52 9.13 37.16 0.34 -2.19 16 12 N -0.67 -13.31 6.04 -102.18 -0.62 -13.93 16 13 C 0.21 4.82 1.47 -68.87 -0.10 4.72 16 14 H 0.00 0.03 6.74 -51.93 -0.35 -0.32 16 15 C -0.58 -15.64 8.45 -34.44 -0.29 -15.93 16 16 H 0.06 1.58 7.83 -52.49 -0.41 1.17 16 17 C 0.02 0.58 5.18 -17.82 -0.09 0.48 16 18 N -0.91 -25.97 12.85 55.43 0.71 -25.26 16 19 Si 1.06 24.91 29.91 -169.99 -5.08 19.83 16 20 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 21 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 22 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 23 C -0.13 -2.75 5.21 -26.73 -0.14 -2.89 16 24 C -0.15 -2.62 9.64 37.16 0.36 -2.26 16 25 N -0.49 -9.00 11.55 -9.87 -0.11 -9.11 16 26 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 33 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.08 1.11 7.67 -51.93 -0.40 0.71 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.33 5.78 6.28 -39.30 -0.25 5.53 16 39 H 0.27 7.51 6.16 -40.82 -0.25 7.26 16 40 H 0.08 1.83 6.26 -51.93 -0.33 1.50 16 41 H 0.05 1.21 8.14 -51.93 -0.42 0.78 16 42 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.04 0.65 6.64 -51.93 -0.34 0.31 16 44 H 0.04 0.76 8.14 -51.93 -0.42 0.33 16 LS Contribution 358.00 15.07 5.39 5.39 Total: -1.00 -29.49 358.00 -8.05 -37.54 By element: Atomic # 1 Polarization: 11.20 SS G_CDS: -7.44 Total: 3.76 kcal Atomic # 6 Polarization: -11.72 SS G_CDS: -1.48 Total: -13.20 kcal Atomic # 7 Polarization: -55.27 SS G_CDS: 0.36 Total: -54.91 kcal Atomic # 8 Polarization: 1.39 SS G_CDS: 0.20 Total: 1.60 kcal Atomic # 14 Polarization: 24.91 SS G_CDS: -5.08 Total: 19.83 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.49 -8.05 -37.54 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580090887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.513 kcal (2) G-P(sol) polarization free energy of solvation -29.492 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.021 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds