Wall clock time and date at job start Tue Mar 31 2020 05:31:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.47033 * 2 1 4 4 C 1.53000 * 109.47033 * 180.02562 * 3 2 1 5 5 C 1.50706 * 109.47011 * 179.97438 * 4 3 2 6 6 N 1.29945 * 126.28623 * 270.02476 * 5 4 3 7 7 O 1.21301 * 110.24946 * 179.68305 * 6 5 4 8 8 C 1.33644 * 109.81141 * 0.46869 * 7 6 5 9 9 C 1.50696 * 126.54977 * 179.79921 * 8 7 6 10 10 H 1.09003 * 109.46976 * 194.68781 * 9 8 7 11 11 C 1.52996 * 109.47392 * 74.69299 * 9 8 7 12 12 N 1.46896 * 109.47383 * 314.68811 * 9 8 7 13 13 C 1.46900 * 111.00201 * 208.42340 * 12 9 8 14 14 H 1.09001 * 109.46959 * 324.89445 * 13 12 9 15 15 C 1.50698 * 109.47232 * 84.88986 * 13 12 9 16 16 H 1.08001 * 120.00175 * 4.30902 * 15 13 12 17 17 C 1.37881 * 120.00212 * 184.30465 * 15 13 12 18 18 N 1.31518 * 119.99480 * 8.04659 * 17 15 13 19 19 Si 1.86791 * 120.00332 * 188.04383 * 17 15 13 20 20 H 1.48500 * 109.47104 * 60.00165 * 19 17 15 21 21 H 1.48495 * 109.47624 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47163 * 300.00400 * 19 17 15 23 23 C 1.52997 * 109.47265 * 204.89226 * 13 12 9 24 24 C 1.53010 * 109.47020 * 65.43008 * 23 13 12 25 25 N 1.31130 * 106.89415 * 359.54037 * 8 7 6 26 26 H 1.09000 * 109.46838 * 179.97438 * 1 2 3 27 27 H 1.08994 * 109.46975 * 299.99822 * 1 2 3 28 28 H 1.09001 * 109.46906 * 60.00254 * 1 2 3 29 29 H 1.08998 * 109.47443 * 240.00264 * 2 1 3 30 30 H 1.09002 * 109.47426 * 119.99757 * 2 1 3 31 31 H 1.08998 * 109.46791 * 59.99865 * 3 2 1 32 32 H 1.09002 * 109.46816 * 300.00130 * 3 2 1 33 33 H 1.08998 * 109.47443 * 60.00264 * 4 3 2 34 34 H 1.09002 * 109.47426 * 299.99757 * 4 3 2 35 35 H 1.09004 * 109.47247 * 62.94290 * 11 9 8 36 36 H 1.09001 * 109.47502 * 182.94843 * 11 9 8 37 37 H 1.09003 * 109.47177 * 302.94875 * 11 9 8 38 38 H 1.00894 * 110.99744 * 84.46897 * 12 9 8 39 39 H 0.96995 * 120.00319 * 2.41884 * 18 17 15 40 40 H 1.09001 * 109.47308 * 185.42439 * 23 13 12 41 41 H 1.08999 * 109.47341 * 305.42952 * 23 13 12 42 42 H 1.08999 * 109.46968 * 174.41113 * 24 23 13 43 43 H 1.08999 * 109.46800 * 294.40842 * 24 23 13 44 44 H 1.08997 * 109.46811 * 54.40783 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0723 2.8634 -0.0013 6 7 4.3278 3.5883 -1.0491 7 8 4.7107 4.6896 -0.7145 8 6 4.7463 4.7709 0.6190 9 6 5.1689 5.9659 1.4342 10 1 5.3431 5.6589 2.4655 11 6 4.0652 7.0248 1.3970 12 7 6.4056 6.5277 0.8750 13 6 7.2007 7.1911 1.9170 14 1 6.5333 7.6649 2.6368 15 6 8.0566 6.1705 2.6219 16 1 8.0667 5.1459 2.2806 17 6 8.8269 6.5448 3.7025 18 7 8.6973 7.7482 4.2170 19 14 10.0544 5.3428 4.4356 20 1 11.0490 4.9588 3.4020 21 1 10.7512 5.9830 5.5800 22 1 9.3384 4.1306 4.9081 23 6 8.0966 8.2530 1.2763 24 6 7.2269 9.3602 0.6774 25 7 4.3381 3.6142 1.0824 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.6766 1.9563 0.8900 32 1 1.6766 1.9563 -0.8900 33 1 3.9330 0.9289 -0.8908 34 1 3.9338 0.9286 0.8891 35 1 3.1626 6.6253 1.8595 36 1 4.3921 7.9098 1.9429 37 1 3.8544 7.2937 0.3619 38 1 6.2041 7.1609 0.1159 39 1 8.0354 8.3601 3.8588 40 1 8.7552 8.6780 2.0338 41 1 8.6960 7.7958 0.4889 42 1 7.8645 10.1640 0.3093 43 1 6.6401 8.9554 -0.1472 44 1 6.5566 9.7500 1.4434 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000580090887.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:31:43 Heat of formation + Delta-G solvation = 16.249528 kcal Electronic energy + Delta-G solvation = -22321.817525 eV Core-core repulsion = 19082.573609 eV Total energy + Delta-G solvation = -3239.243915 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -46.58119 -39.11530 -37.75717 -36.32556 -35.61639 -33.79031 -32.79825 -30.97372 -30.24971 -27.66469 -26.09504 -25.80736 -24.75097 -23.86971 -22.13939 -21.79788 -21.49039 -19.11313 -18.80170 -18.39537 -17.12991 -16.72968 -16.28322 -15.78082 -15.64623 -15.50616 -14.91109 -14.60023 -14.36082 -14.15465 -14.05856 -13.87465 -13.58127 -13.44588 -13.24468 -13.05343 -12.77471 -12.60683 -12.49026 -12.38851 -12.35753 -12.10698 -12.02953 -11.94692 -11.92873 -11.76131 -11.62422 -11.50864 -10.90135 -10.71401 -10.46083 -9.30617 -8.50895 -6.23692 0.10195 1.18100 1.54538 1.59818 1.79733 1.80055 2.49974 2.59064 2.95838 3.21504 3.50918 3.78294 3.91591 3.92980 4.00927 4.10099 4.24125 4.36963 4.40954 4.42684 4.48291 4.52406 4.64353 4.67680 4.72060 4.77741 4.84510 4.89003 4.93047 5.01292 5.03742 5.04517 5.11254 5.20084 5.22058 5.32678 5.34689 5.43321 5.54877 5.93238 6.13512 6.40552 6.58600 6.86265 7.13040 7.50489 8.84289 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.018687 B = 0.003917 C = 0.003458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1498.014870 B = 7146.555630 C = 8094.562639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.119 4.119 3 C -0.106 4.106 4 C -0.027 4.027 5 C 0.168 3.832 6 N -0.409 5.409 7 O 0.070 5.930 8 C 0.220 3.780 9 C 0.181 3.819 10 H 0.099 0.901 11 C -0.167 4.167 12 N -0.679 5.679 13 C 0.219 3.781 14 H -0.012 1.012 15 C -0.594 4.594 16 H 0.034 0.966 17 C -0.021 4.021 18 N -0.932 5.932 19 Si 1.102 2.898 20 H -0.278 1.278 21 H -0.282 1.282 22 H -0.280 1.280 23 C -0.122 4.122 24 C -0.144 4.144 25 N -0.510 5.510 26 H 0.066 0.934 27 H 0.051 0.949 28 H 0.053 0.947 29 H 0.073 0.927 30 H 0.071 0.929 31 H 0.058 0.942 32 H 0.059 0.941 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.080 0.920 38 H 0.343 0.657 39 H 0.263 0.737 40 H 0.045 0.955 41 H 0.046 0.954 42 H 0.060 0.940 43 H 0.065 0.935 44 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.008 -7.941 -8.632 18.270 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.156 4.156 3 C -0.145 4.145 4 C -0.066 4.066 5 C -0.105 4.105 6 N -0.121 5.121 7 O 0.017 5.983 8 C -0.001 4.001 9 C 0.068 3.932 10 H 0.117 0.883 11 C -0.226 4.226 12 N -0.312 5.312 13 C 0.111 3.889 14 H 0.005 0.995 15 C -0.633 4.633 16 H 0.052 0.948 17 C -0.221 4.221 18 N -0.570 5.570 19 Si 0.926 3.074 20 H -0.204 1.204 21 H -0.208 1.208 22 H -0.205 1.205 23 C -0.161 4.161 24 C -0.201 4.201 25 N -0.244 5.244 26 H 0.085 0.915 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.092 0.908 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.078 0.922 33 H 0.122 0.878 34 H 0.120 0.880 35 H 0.095 0.905 36 H 0.097 0.903 37 H 0.099 0.901 38 H 0.164 0.836 39 H 0.074 0.926 40 H 0.064 0.936 41 H 0.065 0.935 42 H 0.079 0.921 43 H 0.084 0.916 44 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -12.688 -9.257 -7.939 17.598 hybrid contribution -1.236 1.234 -0.803 1.923 sum -13.924 -8.023 -8.743 18.294 Atomic orbital electron populations 1.21771 0.95161 1.02334 1.01779 1.21493 0.96459 0.94539 1.03123 1.21524 0.91832 0.99023 1.02073 1.20214 0.97140 0.83667 1.05582 1.26516 0.99366 1.01565 0.83042 1.74544 1.19505 0.93355 1.24659 1.85228 1.61150 1.26970 1.24997 1.29129 0.92670 0.96615 0.81674 1.19912 0.90977 0.87424 0.94876 0.88271 1.22429 0.97908 0.98130 1.04156 1.60268 1.16849 1.41563 1.12568 1.19093 0.90620 0.91395 0.87786 0.99489 1.22217 1.28905 0.96413 1.15719 0.94809 1.26815 1.00372 0.99907 0.94964 1.70912 1.35656 1.07772 1.42661 0.83090 0.74786 0.73559 0.75917 1.20373 1.20761 1.20543 1.21661 0.99090 0.96213 0.99174 1.21803 0.99791 0.98117 1.00429 1.71909 1.19996 1.02297 1.30245 0.91514 0.92967 0.92806 0.90802 0.91022 0.92306 0.92237 0.87826 0.87992 0.90456 0.90348 0.90075 0.83621 0.92644 0.93630 0.93506 0.92050 0.91605 0.93304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.96 9.91 71.98 0.71 -1.25 16 2 C -0.12 -1.66 5.93 30.59 0.18 -1.47 16 3 C -0.11 -2.01 5.20 30.59 0.16 -1.85 16 4 C -0.03 -0.61 5.84 29.85 0.17 -0.44 16 5 C 0.17 5.39 7.47 138.47 1.03 6.43 16 6 N -0.41 -14.04 12.16 -60.32 -0.73 -14.77 16 7 O 0.07 2.48 11.31 74.82 0.85 3.33 16 8 C 0.22 7.95 7.35 88.38 0.65 8.60 16 9 C 0.18 6.49 2.92 44.17 0.13 6.61 16 10 H 0.10 4.15 7.60 -2.39 -0.02 4.13 16 11 C -0.17 -4.51 9.13 71.98 0.66 -3.85 16 12 N -0.68 -26.68 6.04 -477.18 -2.88 -29.57 16 13 C 0.22 10.09 1.47 44.17 0.06 10.16 16 14 H -0.01 -0.60 6.74 -2.39 -0.02 -0.62 16 15 C -0.59 -32.53 8.45 25.60 0.22 -32.32 16 16 H 0.03 1.96 7.83 -2.91 -0.02 1.93 16 17 C -0.02 -1.17 5.18 84.66 0.44 -0.74 16 18 N -0.93 -53.98 12.85 21.45 0.28 -53.71 16 19 Si 1.10 50.62 29.91 68.60 2.05 52.67 16 20 H -0.28 -12.20 7.11 99.48 0.71 -11.50 16 21 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 22 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 23 C -0.12 -5.23 5.21 30.60 0.16 -5.07 16 24 C -0.14 -4.60 9.64 71.99 0.69 -3.91 16 25 N -0.51 -18.61 11.55 -303.21 -3.50 -22.11 16 26 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 29 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 30 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 1.23 8.14 -2.39 -0.02 1.22 16 32 H 0.06 1.18 8.14 -2.39 -0.02 1.17 16 33 H 0.10 2.01 8.14 -2.39 -0.02 1.99 16 34 H 0.10 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.08 1.89 8.14 -2.39 -0.02 1.87 16 36 H 0.08 2.13 7.67 -2.39 -0.02 2.11 16 37 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.34 11.59 6.28 -89.70 -0.56 11.02 16 39 H 0.26 15.05 6.16 -92.71 -0.57 14.48 16 40 H 0.04 2.22 6.26 -2.39 -0.01 2.20 16 41 H 0.05 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 1.76 8.14 -2.39 -0.02 1.74 16 43 H 0.07 1.80 6.64 -2.39 -0.02 1.79 16 44 H 0.05 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -64.05 358.00 1.94 -62.12 By element: Atomic # 1 Polarization: 20.53 SS G_CDS: 0.61 Total: 21.14 kcal Atomic # 6 Polarization: -24.37 SS G_CDS: 5.27 Total: -19.09 kcal Atomic # 7 Polarization: -113.31 SS G_CDS: -6.84 Total: -120.16 kcal Atomic # 8 Polarization: 2.48 SS G_CDS: 0.85 Total: 3.33 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 2.05 Total: 52.67 kcal Total: -64.05 1.94 -62.12 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000580090887.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.368 kcal (2) G-P(sol) polarization free energy of solvation -64.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.314 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.936 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds