Wall clock time and date at job start Tue Mar 31 2020 05:07:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34230 * 116.99836 * 2 1 4 4 O 1.20833 * 119.99930 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00262 * 180.27336 * 3 2 1 6 6 H 1.09004 * 109.46801 * 299.72165 * 5 3 2 7 7 C 1.53006 * 109.47194 * 59.71653 * 5 3 2 8 8 C 1.53005 * 117.49647 * 8.75374 * 7 5 3 9 9 C 1.52994 * 117.50105 * 300.09388 * 7 5 3 10 10 N 1.46896 * 109.47652 * 179.72202 * 5 3 2 11 11 C 1.46850 * 110.99525 * 295.78942 * 10 5 3 12 12 C 1.53038 * 109.51986 * 185.83779 * 11 10 5 13 13 C 1.53124 * 109.28062 * 300.81847 * 12 11 10 14 14 C 1.52998 * 109.52403 * 177.55966 * 13 12 11 15 15 C 1.50697 * 109.46932 * 65.31859 * 14 13 12 16 16 H 1.08001 * 120.00684 * 359.97438 * 15 14 13 17 17 C 1.37883 * 119.99920 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00007 * 0.02562 * 17 15 14 19 19 Si 1.86802 * 120.00041 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.47100 * 90.00234 * 19 17 15 21 21 H 1.48496 * 109.47121 * 209.99728 * 19 17 15 22 22 H 1.48498 * 109.47122 * 330.00107 * 19 17 15 23 23 C 1.53116 * 109.15850 * 57.65587 * 13 12 11 24 24 C 1.46845 * 111.00156 * 59.99286 * 10 5 3 25 25 H 1.09001 * 109.46882 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47630 * 300.00638 * 1 2 3 27 27 H 1.09004 * 109.46770 * 60.01042 * 1 2 3 28 28 H 1.08998 * 115.55021 * 154.41795 * 7 5 3 29 29 H 1.09001 * 117.49819 * 359.97438 * 8 7 5 30 30 H 1.08994 * 117.49914 * 145.01622 * 8 7 5 31 31 H 1.09000 * 117.50015 * 214.97865 * 9 7 5 32 32 H 1.09005 * 117.49934 * 359.97438 * 9 7 5 33 33 H 1.08998 * 109.46261 * 305.84830 * 11 10 5 34 34 H 1.08996 * 109.46547 * 65.82485 * 11 10 5 35 35 H 1.09003 * 109.50365 * 180.87872 * 12 11 10 36 36 H 1.08996 * 109.50586 * 60.76380 * 12 11 10 37 37 H 1.08999 * 109.52124 * 297.75583 * 13 12 11 38 38 H 1.08998 * 109.47032 * 185.31963 * 14 13 12 39 39 H 1.09007 * 109.47164 * 305.32044 * 14 13 12 40 40 H 0.96999 * 120.00348 * 180.02562 * 18 17 15 41 41 H 1.08995 * 109.50496 * 182.40531 * 23 13 12 42 42 H 1.09001 * 109.53862 * 62.30391 * 23 13 12 43 43 H 1.08997 * 109.46775 * 294.18242 * 24 10 5 44 44 H 1.09007 * 109.45935 * 54.16026 * 24 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2094 -0.0005 5 6 3.5663 1.2750 -0.0062 6 1 3.9595 0.7833 0.8836 7 6 4.1084 0.5780 -1.2558 8 6 3.0962 0.1439 -2.3178 9 6 3.7789 -0.9051 -1.4365 10 7 3.9828 2.6837 -0.0117 11 6 3.5550 3.3540 -1.2462 12 6 4.1287 4.7724 -1.2831 13 6 3.6339 5.5498 -0.0602 14 6 4.2526 6.9491 -0.0592 15 6 3.7441 7.7239 -1.2476 16 1 3.0496 7.2642 -1.9351 17 6 4.1657 9.0199 -1.4572 18 7 5.0119 9.5796 -0.6204 19 14 3.5361 9.9801 -2.9307 20 1 2.2971 10.7074 -2.5548 21 1 4.5693 10.9543 -3.3649 22 1 3.2412 9.0421 -4.0435 23 6 4.0507 4.8052 1.2111 24 6 3.4793 3.3859 1.1756 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5137 -0.8901 28 1 5.0832 0.9227 -1.6007 29 1 2.0440 0.3545 -2.1261 30 1 3.4052 0.2026 -3.3614 31 1 4.5368 -1.5361 -1.9007 32 1 3.1762 -1.3844 -0.6650 33 1 3.9170 2.7934 -2.1080 34 1 2.4665 3.4017 -1.2752 35 1 3.7982 5.2751 -2.1921 36 1 5.2175 4.7250 -1.2681 37 1 2.5474 5.6308 -0.0952 38 1 3.9757 7.4681 0.8584 39 1 5.3380 6.8666 -0.1167 40 1 5.3083 10.4914 -0.7677 41 1 3.6645 5.3312 2.0841 42 1 5.1383 4.7583 1.2661 43 1 2.3911 3.4334 1.1353 44 1 3.7863 2.8485 2.0729 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581820482.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:34 Heat of formation + Delta-G solvation = -61.222467 kcal Electronic energy + Delta-G solvation = -23397.774923 eV Core-core repulsion = 20122.878819 eV Total energy + Delta-G solvation = -3274.896104 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.29449 -38.61816 -37.25945 -36.41920 -34.04261 -32.18167 -30.31584 -29.30989 -27.81796 -26.06598 -23.52506 -22.99322 -22.78188 -21.90692 -20.73120 -19.93270 -18.91944 -17.63395 -17.11468 -16.68634 -16.13458 -15.55982 -14.98512 -14.65194 -14.41939 -14.29810 -13.90527 -13.38966 -13.25110 -12.82688 -12.73965 -12.36358 -12.20264 -11.90638 -11.77248 -11.58638 -11.40686 -11.09900 -11.02914 -10.96489 -10.76453 -10.60241 -10.47838 -10.30607 -10.21865 -10.13358 -9.85482 -9.43891 -8.96720 -8.80609 -8.26773 -8.10341 -5.91749 -3.92617 2.06075 2.58224 3.36394 3.42520 3.45930 3.56880 3.88527 4.46391 4.52503 4.66669 4.74265 4.84714 4.90907 4.97828 5.18430 5.25132 5.31751 5.40910 5.43733 5.50795 5.58373 5.72743 5.73342 5.88289 5.93896 5.97432 6.03795 6.11536 6.19096 6.31076 6.47270 6.51816 6.63402 6.73742 7.03977 7.12272 7.26139 7.28567 7.35316 7.66772 7.77841 7.94969 8.09831 8.53638 9.14041 9.70443 11.19692 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025832 B = 0.003991 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1083.650872 B = 7014.714584 C = 7084.226347 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.362 6.362 3 C 0.430 3.570 4 O -0.493 6.493 5 C 0.124 3.876 6 H 0.119 0.881 7 C -0.141 4.141 8 C -0.184 4.184 9 C -0.167 4.167 10 N -0.498 5.498 11 C 0.040 3.960 12 C -0.097 4.097 13 C -0.081 4.081 14 C 0.028 3.972 15 C -0.512 4.512 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.888 3.112 20 H -0.282 1.282 21 H -0.287 1.287 22 H -0.274 1.274 23 C -0.108 4.108 24 C 0.037 3.963 25 H 0.098 0.902 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.128 0.872 29 H 0.090 0.910 30 H 0.097 0.903 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.067 0.933 34 H 0.053 0.947 35 H 0.072 0.928 36 H 0.061 0.939 37 H 0.053 0.947 38 H 0.013 0.987 39 H 0.016 0.984 40 H 0.259 0.741 41 H 0.060 0.940 42 H 0.064 0.936 43 H 0.063 0.937 44 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.532 -23.012 0.957 23.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.278 6.278 3 C 0.271 3.729 4 O -0.379 6.379 5 C 0.013 3.987 6 H 0.137 0.863 7 C -0.160 4.160 8 C -0.221 4.221 9 C -0.204 4.204 10 N -0.221 5.221 11 C -0.087 4.087 12 C -0.134 4.134 13 C -0.099 4.099 14 C -0.009 4.009 15 C -0.550 4.550 16 H 0.073 0.927 17 C -0.145 4.145 18 N -0.537 5.537 19 Si 0.716 3.284 20 H -0.208 1.208 21 H -0.213 1.213 22 H -0.199 1.199 23 C -0.146 4.146 24 C -0.090 4.090 25 H 0.116 0.884 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.146 0.854 29 H 0.108 0.892 30 H 0.115 0.885 31 H 0.115 0.885 32 H 0.123 0.877 33 H 0.086 0.914 34 H 0.071 0.929 35 H 0.091 0.909 36 H 0.079 0.921 37 H 0.071 0.929 38 H 0.032 0.968 39 H 0.035 0.965 40 H 0.068 0.932 41 H 0.079 0.921 42 H 0.082 0.918 43 H 0.081 0.919 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -4.155 -22.509 1.005 22.912 hybrid contribution -1.476 0.725 -0.792 1.825 sum -5.631 -21.784 0.213 22.501 Atomic orbital electron populations 1.23213 0.77252 1.03327 1.02461 1.86619 1.22866 1.34293 1.84026 1.25771 0.93563 0.81467 0.72059 1.90658 1.67146 1.35709 1.44403 1.21412 0.83954 0.93067 1.00305 0.86323 1.22129 1.01014 0.96894 0.95952 1.23152 0.97829 1.04388 0.96727 1.23067 1.03175 0.91137 1.03016 1.62555 1.56464 0.98662 1.04455 1.22471 0.99555 0.96365 0.90338 1.21520 1.00465 0.91693 0.99763 1.21223 0.99470 0.97086 0.92159 1.19118 0.95900 0.89095 0.96776 1.21271 1.26217 0.97722 1.09827 0.92739 1.25012 0.95261 0.97818 0.96391 1.69967 1.32922 1.13999 1.36798 0.86663 0.78487 0.79951 0.83312 1.20814 1.21320 1.19942 1.21645 1.00915 0.92788 0.99213 1.22478 0.99783 0.95860 0.90903 0.88385 0.92086 0.92099 0.85399 0.89213 0.88455 0.88480 0.87736 0.91419 0.92922 0.90929 0.92054 0.92888 0.96821 0.96528 0.93162 0.92112 0.91771 0.91936 0.92079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.56 101.05 1.07 1.34 16 2 O -0.36 -3.90 7.43 -39.26 -0.29 -4.19 16 3 C 0.43 5.61 5.16 36.00 0.19 5.80 16 4 O -0.49 -8.00 11.37 -18.76 -0.21 -8.22 16 5 C 0.12 1.50 2.75 -68.87 -0.19 1.31 16 6 H 0.12 1.24 8.14 -51.93 -0.42 0.81 16 7 C -0.14 -1.46 4.26 -90.62 -0.39 -1.84 16 8 C -0.18 -1.82 9.38 -26.69 -0.25 -2.07 16 9 C -0.17 -1.39 9.77 -26.70 -0.26 -1.66 16 10 N -0.50 -7.44 4.68 -228.08 -1.07 -8.51 16 11 C 0.04 0.66 4.84 -3.83 -0.02 0.64 16 12 C -0.10 -1.90 5.15 -26.65 -0.14 -2.04 16 13 C -0.08 -1.74 2.20 -90.50 -0.20 -1.94 16 14 C 0.03 0.74 4.45 -27.89 -0.12 0.62 16 15 C -0.51 -14.67 8.45 -34.44 -0.29 -14.96 16 16 H 0.05 1.53 7.08 -52.49 -0.37 1.16 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.90 -27.45 13.29 55.43 0.74 -26.71 16 19 Si 0.89 22.10 29.54 -169.99 -5.02 17.08 16 20 H -0.28 -6.95 7.11 56.52 0.40 -6.54 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 22 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.11 -1.98 5.38 -26.65 -0.14 -2.12 16 24 C 0.04 0.58 5.00 -3.83 -0.02 0.56 16 25 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.06 0.55 8.13 -51.93 -0.42 0.12 16 27 H 0.06 0.55 8.13 -51.93 -0.42 0.13 16 28 H 0.13 1.33 8.09 -51.93 -0.42 0.91 16 29 H 0.09 1.00 5.85 -51.93 -0.30 0.70 16 30 H 0.10 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.10 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.10 0.87 6.83 -51.93 -0.35 0.52 16 33 H 0.07 1.01 6.57 -51.93 -0.34 0.67 16 34 H 0.05 0.96 5.85 -51.93 -0.30 0.66 16 35 H 0.07 1.53 7.05 -51.93 -0.37 1.16 16 36 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 38 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.02 0.46 8.14 -51.92 -0.42 0.04 16 40 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 41 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 42 H 0.06 1.19 8.14 -51.93 -0.42 0.76 16 43 H 0.06 1.10 5.51 -51.93 -0.29 0.81 16 44 H 0.06 0.84 8.12 -51.93 -0.42 0.42 16 LS Contribution 337.39 15.07 5.08 5.08 Total: -1.00 -31.73 337.39 -9.01 -40.74 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -7.38 Total: -0.43 kcal Atomic # 6 Polarization: -13.97 SS G_CDS: -0.86 Total: -14.84 kcal Atomic # 7 Polarization: -34.89 SS G_CDS: -0.33 Total: -35.22 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: -0.50 Total: -12.41 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.02 Total: 17.08 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.73 -9.01 -40.74 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581820482.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.483 kcal (2) G-P(sol) polarization free energy of solvation -31.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.740 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds