Wall clock time and date at job start Tue Mar 31 2020 05:07:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34224 * 116.99699 * 2 1 4 4 O 1.20825 * 120.00291 * 0.02562 * 3 2 1 5 5 C 1.50697 * 120.00024 * 179.97438 * 3 2 1 6 6 H 1.09005 * 109.47420 * 60.00263 * 5 3 2 7 7 C 1.53008 * 109.47082 * 300.00308 * 5 3 2 8 8 C 1.53001 * 117.49831 * 128.74612 * 7 5 3 9 9 C 1.52995 * 117.49740 * 60.08802 * 7 5 3 10 10 N 1.46898 * 109.47335 * 180.02562 * 5 3 2 11 11 C 1.46847 * 110.99897 * 299.99802 * 10 5 3 12 12 C 1.53034 * 109.51345 * 174.16738 * 11 10 5 13 13 C 1.53099 * 109.29509 * 59.18740 * 12 11 10 14 14 C 1.52993 * 109.52781 * 182.43453 * 13 12 11 15 15 C 1.50699 * 109.47187 * 294.67655 * 14 13 12 16 16 H 1.07994 * 120.00054 * 359.97438 * 15 14 13 17 17 C 1.37878 * 119.99439 * 180.02562 * 15 14 13 18 18 N 1.31504 * 120.00836 * 0.02562 * 17 15 14 19 19 Si 1.86810 * 119.99406 * 180.02562 * 17 15 14 20 20 H 1.48500 * 109.47064 * 59.99864 * 19 17 15 21 21 H 1.48496 * 109.46820 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.46902 * 299.99913 * 19 17 15 23 23 C 1.53126 * 109.15071 * 302.33888 * 13 12 11 24 24 C 1.46854 * 110.99958 * 175.78940 * 10 5 3 25 25 H 1.08999 * 109.47135 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47495 * 299.99638 * 1 2 3 27 27 H 1.09005 * 109.46795 * 60.00143 * 1 2 3 28 28 H 1.08991 * 115.54728 * 274.41316 * 7 5 3 29 29 H 1.09007 * 117.50055 * 359.97438 * 8 7 5 30 30 H 1.08992 * 117.50054 * 145.01661 * 8 7 5 31 31 H 1.08997 * 117.49590 * 214.98092 * 9 7 5 32 32 H 1.08998 * 117.49951 * 359.97305 * 9 7 5 33 33 H 1.09002 * 109.46481 * 294.17890 * 11 10 5 34 34 H 1.08994 * 109.46283 * 54.15743 * 11 10 5 35 35 H 1.09007 * 109.50453 * 179.12106 * 12 11 10 36 36 H 1.09009 * 109.50412 * 299.23146 * 12 11 10 37 37 H 1.09002 * 109.57693 * 62.27167 * 13 12 11 38 38 H 1.09004 * 109.47084 * 54.67770 * 14 13 12 39 39 H 1.09001 * 109.46990 * 174.67248 * 14 13 12 40 40 H 0.97004 * 120.00513 * 180.02562 * 18 17 15 41 41 H 1.08994 * 109.50076 * 297.71308 * 23 13 12 42 42 H 1.08998 * 109.53581 * 177.61293 * 23 13 12 43 43 H 1.08993 * 109.46229 * 305.85774 * 24 10 5 44 44 H 1.09008 * 109.45803 * 65.83386 * 24 10 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5662 1.2749 0.0006 6 1 3.9564 0.7807 -0.8892 7 6 4.1129 0.5815 1.2502 8 6 5.2059 -0.4708 1.0532 9 6 3.7875 -0.9020 1.4343 10 7 3.9827 2.6836 0.0011 11 6 3.4751 3.3829 -1.1862 12 6 3.8028 4.8740 -1.0804 13 6 5.3194 5.0520 -0.9701 14 6 5.6492 6.5366 -0.8031 15 6 5.2577 7.2820 -2.0530 16 1 4.8181 6.7499 -2.8836 17 6 5.4618 8.6430 -2.1364 18 7 5.9985 9.2907 -1.1256 19 14 4.9759 9.5670 -3.6855 20 1 3.5182 9.4077 -3.9202 21 1 5.2973 11.0077 -3.5238 22 1 5.7265 9.0199 -4.8442 23 6 5.8293 4.2745 0.2464 24 6 5.4431 2.8006 0.1023 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5137 0.8899 27 1 -0.3633 0.5138 -0.8901 28 1 4.1655 1.2002 2.1460 29 1 5.5353 -0.6695 0.0332 30 1 5.9774 -0.5447 1.8195 31 1 3.6264 -1.2595 2.4513 32 1 3.1837 -1.3840 0.6654 33 1 3.9446 2.9703 -2.0792 34 1 2.3949 3.2521 -1.2506 35 1 3.4396 5.3904 -1.9691 36 1 3.3220 5.2903 -0.1951 37 1 5.7983 4.6718 -1.8724 38 1 5.0975 6.9380 0.0471 39 1 6.7189 6.6539 -0.6300 40 1 6.1418 10.2483 -1.1842 41 1 5.3805 4.6813 1.1525 42 1 6.9141 4.3622 0.3066 43 1 5.7922 2.2468 0.9737 44 1 5.9034 2.3909 -0.7969 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000581820483.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:07:36 Heat of formation + Delta-G solvation = -62.647029 kcal Electronic energy + Delta-G solvation = -22992.674672 eV Core-core repulsion = 19717.716794 eV Total energy + Delta-G solvation = -3274.957878 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.178 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.88075 -38.81233 -37.22459 -36.47226 -34.09616 -32.19823 -30.32010 -29.42808 -27.80434 -26.11605 -23.57574 -23.13650 -22.43032 -21.63174 -20.80043 -20.08511 -18.90222 -17.75162 -16.69326 -16.47470 -16.22400 -16.09656 -14.94905 -14.64214 -14.38986 -14.19389 -13.79840 -13.57480 -13.28072 -12.88419 -12.73939 -12.38317 -12.26555 -11.92799 -11.77307 -11.63416 -11.46813 -11.10406 -10.91201 -10.85760 -10.79705 -10.62175 -10.50355 -10.48530 -10.23850 -10.07851 -9.76172 -9.40105 -8.93957 -8.82347 -8.27153 -8.15478 -5.92185 -3.93384 2.14362 2.48486 3.37597 3.41851 3.44386 3.53395 4.00650 4.48259 4.51988 4.59371 4.78108 4.83750 4.93728 5.01465 5.02162 5.23613 5.34397 5.42307 5.43163 5.47753 5.50591 5.64797 5.68864 5.79054 5.91386 5.93245 6.00272 6.04623 6.17810 6.24973 6.41958 6.49493 6.63430 6.72136 7.03332 7.15022 7.27641 7.27855 7.38110 7.76025 7.76731 7.93602 8.08917 8.52254 9.12956 9.69734 11.19184 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.025770 B = 0.003893 C = 0.003501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1086.266463 B = 7190.453657 C = 7995.093349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 O -0.359 6.359 3 C 0.466 3.534 4 O -0.480 6.480 5 C 0.128 3.872 6 H 0.073 0.927 7 C -0.148 4.148 8 C -0.173 4.173 9 C -0.168 4.168 10 N -0.516 5.516 11 C 0.041 3.959 12 C -0.094 4.094 13 C -0.083 4.083 14 C 0.029 3.971 15 C -0.514 4.514 16 H 0.054 0.946 17 C 0.056 3.944 18 N -0.897 5.897 19 Si 0.888 3.112 20 H -0.277 1.277 21 H -0.288 1.288 22 H -0.278 1.278 23 C -0.111 4.111 24 C 0.063 3.937 25 H 0.099 0.901 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.120 0.880 29 H 0.095 0.905 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.022 0.978 34 H 0.090 0.910 35 H 0.072 0.928 36 H 0.064 0.936 37 H 0.051 0.949 38 H 0.017 0.983 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.066 0.934 42 H 0.062 0.938 43 H 0.073 0.927 44 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.821 -22.824 4.262 23.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 O -0.276 6.276 3 C 0.307 3.693 4 O -0.365 6.365 5 C 0.018 3.982 6 H 0.090 0.910 7 C -0.167 4.167 8 C -0.210 4.210 9 C -0.205 4.205 10 N -0.243 5.243 11 C -0.086 4.086 12 C -0.132 4.132 13 C -0.102 4.102 14 C -0.008 4.008 15 C -0.552 4.552 16 H 0.072 0.928 17 C -0.144 4.144 18 N -0.536 5.536 19 Si 0.716 3.284 20 H -0.203 1.203 21 H -0.214 1.214 22 H -0.204 1.204 23 C -0.149 4.149 24 C -0.064 4.064 25 H 0.117 0.883 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.138 0.862 29 H 0.113 0.887 30 H 0.117 0.883 31 H 0.114 0.886 32 H 0.123 0.877 33 H 0.041 0.959 34 H 0.108 0.892 35 H 0.091 0.909 36 H 0.083 0.917 37 H 0.069 0.931 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.085 0.915 42 H 0.081 0.919 43 H 0.092 0.908 44 H 0.048 0.952 Dipole moment (debyes) X Y Z Total from point charges -6.211 -22.105 4.722 23.441 hybrid contribution -0.109 0.352 -1.575 1.617 sum -6.320 -21.753 3.147 22.870 Atomic orbital electron populations 1.23232 0.76665 1.03380 1.02605 1.86505 1.23092 1.33518 1.84447 1.23580 0.91629 0.81358 0.72747 1.90647 1.66658 1.35857 1.43338 1.20712 0.87188 0.92158 0.98177 0.90958 1.22102 1.04298 0.91623 0.98667 1.23105 0.92329 1.02574 1.02980 1.23080 0.98320 0.95869 1.03250 1.61747 1.12497 1.07847 1.42179 1.22574 1.01117 0.96434 0.88489 1.21479 0.96992 0.91963 1.02744 1.21262 0.94517 0.98851 0.95525 1.19106 0.96543 0.88209 0.96978 1.21227 1.40347 0.92639 1.01031 0.92790 1.25006 0.95453 0.97850 0.96123 1.69951 1.44386 1.08607 1.30694 0.86723 0.79016 0.78786 0.83857 1.20283 1.21377 1.20381 1.21694 1.00020 0.92744 1.00423 1.22154 0.85406 0.98780 1.00064 0.88303 0.91887 0.92028 0.86191 0.88693 0.88343 0.88593 0.87668 0.95931 0.89232 0.90934 0.91713 0.93094 0.96489 0.96793 0.93078 0.91503 0.91928 0.90847 0.95235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.29 10.56 101.05 1.07 1.36 16 2 O -0.36 -3.91 8.50 -39.24 -0.33 -4.25 16 3 C 0.47 6.30 6.92 36.00 0.25 6.55 16 4 O -0.48 -8.02 13.60 -18.75 -0.25 -8.27 16 5 C 0.13 1.61 2.23 -68.86 -0.15 1.45 16 6 H 0.07 0.85 7.90 -51.93 -0.41 0.44 16 7 C -0.15 -1.53 3.69 -90.62 -0.33 -1.87 16 8 C -0.17 -1.42 10.02 -26.69 -0.27 -1.69 16 9 C -0.17 -1.39 9.45 -26.70 -0.25 -1.64 16 10 N -0.52 -7.96 4.32 -228.07 -0.99 -8.94 16 11 C 0.04 0.70 5.07 -3.84 -0.02 0.68 16 12 C -0.09 -1.90 5.15 -26.66 -0.14 -2.04 16 13 C -0.08 -1.74 2.20 -90.51 -0.20 -1.94 16 14 C 0.03 0.75 4.45 -27.89 -0.12 0.62 16 15 C -0.51 -14.65 8.44 -34.44 -0.29 -14.94 16 16 H 0.05 1.49 7.08 -52.49 -0.37 1.12 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 18 N -0.90 -27.41 13.29 55.43 0.74 -26.67 16 19 Si 0.89 22.05 29.54 -169.99 -5.02 17.03 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 23 C -0.11 -1.95 5.38 -26.65 -0.14 -2.10 16 24 C 0.06 0.92 5.23 -3.83 -0.02 0.90 16 25 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 26 H 0.06 0.54 8.13 -51.93 -0.42 0.12 16 27 H 0.06 0.53 8.13 -51.93 -0.42 0.11 16 28 H 0.12 1.34 8.09 -51.93 -0.42 0.92 16 29 H 0.09 0.75 8.05 -51.92 -0.42 0.33 16 30 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.11 0.88 6.85 -51.93 -0.36 0.52 16 33 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.09 1.59 5.25 -51.93 -0.27 1.32 16 35 H 0.07 1.55 7.05 -51.93 -0.37 1.19 16 36 H 0.06 1.39 8.14 -51.92 -0.42 0.97 16 37 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 38 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.01 0.38 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 41 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.07 0.93 6.57 -51.93 -0.34 0.59 16 44 H 0.03 0.42 8.14 -51.92 -0.42 0.00 16 LS Contribution 345.79 15.07 5.21 5.21 Total: -1.00 -31.96 345.79 -8.96 -40.92 By element: Atomic # 1 Polarization: 5.66 SS G_CDS: -7.59 Total: -1.92 kcal Atomic # 6 Polarization: -12.38 SS G_CDS: -0.72 Total: -13.10 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.25 Total: -35.61 kcal Atomic # 8 Polarization: -11.93 SS G_CDS: -0.59 Total: -12.52 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.02 Total: 17.03 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -31.96 -8.96 -40.92 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000581820483.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.731 kcal (2) G-P(sol) polarization free energy of solvation -31.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds