Wall clock time and date at job start Tue Mar 31 2020 05:32:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99837 * 2 1 4 4 C 1.53006 * 109.46979 * 94.99918 * 3 2 1 5 5 C 1.50694 * 120.00114 * 179.97438 * 2 1 3 6 6 N 1.46502 * 109.47154 * 94.99946 * 5 2 1 7 7 C 1.34779 * 120.00207 * 180.02562 * 6 5 2 8 8 O 1.21587 * 119.99510 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99840 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99376 * 180.02562 * 9 7 6 11 11 C 1.53065 * 109.44591 * 84.79556 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.23295 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45272 * 204.99544 * 10 9 7 24 24 H 1.08003 * 119.99906 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.00294 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47225 * 214.99811 * 3 2 1 27 27 H 1.08995 * 109.47600 * 335.00459 * 3 2 1 28 28 H 1.09000 * 109.47331 * 299.99831 * 4 3 2 29 29 H 1.09002 * 109.47113 * 59.99627 * 4 3 2 30 30 H 1.08996 * 109.47117 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46999 * 335.00444 * 5 2 1 32 32 H 1.08999 * 109.47393 * 214.99946 * 5 2 1 33 33 H 0.96995 * 119.99680 * 0.02562 * 6 5 2 34 34 H 0.96995 * 120.00047 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.45813 * 324.96250 * 10 9 7 36 36 H 1.09005 * 109.39523 * 61.35360 * 11 10 9 37 37 H 1.09004 * 109.62174 * 301.25047 * 11 10 9 38 38 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 39 39 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 40 40 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 42 42 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 43 43 H 1.09002 * 109.49883 * 58.67895 * 23 10 9 44 44 H 1.08997 * 109.52642 * 298.59203 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.4273 1.6840 1.4371 5 6 2.0635 -1.3050 0.0006 6 7 2.4119 -1.6684 -1.3752 7 6 3.0926 -2.8056 -1.6202 8 8 3.4171 -3.5301 -0.6992 9 7 3.4136 -3.1395 -2.8858 10 6 4.1530 -4.3759 -3.1520 11 6 3.1717 -5.5471 -3.2423 12 6 3.9510 -6.8425 -3.4900 13 7 4.7980 -6.6685 -4.6778 14 6 4.7349 -7.5590 -5.7162 15 1 4.9691 -7.2357 -6.7198 16 6 4.3700 -8.8771 -5.4790 17 7 4.4079 -9.3605 -4.2553 18 14 3.8251 -9.9650 -6.8964 19 1 5.0065 -10.6563 -7.4724 20 1 2.8540 -10.9735 -6.4015 21 1 3.1818 -9.1299 -7.9424 22 6 5.7142 -5.5211 -4.7302 23 6 4.9152 -4.2398 -4.4722 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 2.9741 1.1989 -0.5894 27 1 1.4386 2.0855 -0.4342 28 1 1.5166 1.7902 2.0265 29 1 3.0522 0.9036 1.8714 30 1 2.9727 2.6277 1.4371 31 1 1.4385 -2.0852 0.4352 32 1 2.9742 -1.1985 0.5900 33 1 2.1527 -1.0905 -2.1099 34 1 3.1544 -2.5616 -3.6204 35 1 4.8593 -4.5581 -2.3421 36 1 2.4789 -5.3761 -4.0663 37 1 2.6144 -5.6305 -2.3092 38 1 3.2528 -7.6630 -3.6560 39 1 4.5759 -7.0641 -2.6248 40 1 4.1533 -10.2816 -4.0896 41 1 6.4832 -5.6325 -3.9657 42 1 6.1813 -5.4712 -5.7137 43 1 5.5971 -3.3916 -4.4129 44 1 4.2081 -4.0819 -5.2865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590804416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:54 Heat of formation + Delta-G solvation = -4.245752 kcal Electronic energy + Delta-G solvation = -22122.669567 eV Core-core repulsion = 18882.536910 eV Total energy + Delta-G solvation = -3240.132657 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.93466 -37.77519 -36.89523 -34.31663 -33.81767 -32.02525 -30.74578 -29.94864 -29.34968 -26.40810 -24.70584 -23.88457 -22.19886 -21.95478 -20.54115 -19.42658 -19.06564 -17.81503 -16.77286 -16.18226 -15.66840 -15.22557 -14.89372 -14.65188 -14.37286 -14.01522 -13.70456 -13.45606 -13.42434 -13.13457 -12.94848 -12.70515 -12.41810 -12.30506 -12.08472 -11.44344 -11.25127 -11.09363 -11.05862 -10.89366 -10.68870 -10.34058 -10.22688 -10.11027 -9.97838 -9.71487 -9.62063 -9.44103 -9.10353 -8.56484 -8.34512 -6.64525 -5.75374 -3.18385 1.68248 3.04219 3.39416 3.44902 3.46305 3.48404 4.39315 4.44667 4.48088 4.52009 4.88241 5.03019 5.22729 5.31990 5.34834 5.43681 5.50366 5.50891 5.57955 5.60372 5.65877 5.70185 5.87861 5.89115 6.14007 6.21535 6.28630 6.41903 6.42718 6.50857 6.50928 6.64746 6.69840 6.81769 6.95918 7.00345 7.17559 7.43662 7.73154 7.82536 8.21439 8.48554 8.83159 9.24293 9.87768 10.44733 11.33186 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039859 B = 0.002928 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.314285 B = 9560.111662 C = 9750.723841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.143 4.143 3 C -0.089 4.089 4 C -0.148 4.148 5 C 0.175 3.825 6 N -0.748 5.748 7 C 0.701 3.299 8 O -0.589 6.589 9 N -0.740 5.740 10 C 0.169 3.831 11 C -0.146 4.146 12 C 0.174 3.826 13 N -0.593 5.593 14 C -0.254 4.254 15 H 0.065 0.935 16 C 0.002 3.998 17 N -0.901 5.901 18 Si 0.902 3.098 19 H -0.287 1.287 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.149 3.851 23 C -0.138 4.138 24 H 0.101 0.899 25 H 0.102 0.898 26 H 0.070 0.930 27 H 0.068 0.932 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.069 0.931 32 H 0.069 0.931 33 H 0.393 0.607 34 H 0.390 0.610 35 H 0.081 0.919 36 H 0.052 0.948 37 H 0.053 0.947 38 H 0.088 0.912 39 H 0.020 0.980 40 H 0.254 0.746 41 H 0.020 0.980 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.154 21.754 6.274 23.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.143 4.143 3 C -0.127 4.127 4 C -0.205 4.205 5 C 0.051 3.949 6 N -0.405 5.405 7 C 0.400 3.600 8 O -0.467 6.467 9 N -0.393 5.393 10 C 0.065 3.935 11 C -0.187 4.187 12 C 0.047 3.953 13 N -0.316 5.316 14 C -0.384 4.384 15 H 0.083 0.917 16 C -0.197 4.197 17 N -0.545 5.545 18 Si 0.731 3.269 19 H -0.214 1.214 20 H -0.216 1.216 21 H -0.205 1.205 22 C 0.021 3.979 23 C -0.178 4.178 24 H 0.119 0.881 25 H 0.120 0.880 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.074 0.926 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.087 0.913 32 H 0.088 0.912 33 H 0.227 0.773 34 H 0.222 0.778 35 H 0.099 0.901 36 H 0.071 0.929 37 H 0.072 0.928 38 H 0.106 0.894 39 H 0.039 0.961 40 H 0.064 0.936 41 H 0.038 0.962 42 H 0.076 0.924 43 H 0.073 0.927 44 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -5.854 20.864 7.198 22.834 hybrid contribution -0.657 -0.035 -1.330 1.484 sum -6.511 20.830 5.868 22.599 Atomic orbital electron populations 1.23898 0.95170 1.02305 0.98873 1.21850 0.95412 0.95338 1.01708 1.20609 1.00133 0.93986 0.97936 1.21737 1.01598 1.01352 0.95819 1.20053 0.99000 0.92830 0.82971 1.45147 1.61953 1.24592 1.08802 1.16024 0.78849 0.81190 0.83889 1.90933 1.59592 1.52678 1.43495 1.45519 1.61385 1.26563 1.05853 1.20906 0.93157 0.81853 0.97614 1.22577 0.98508 0.97388 1.00215 1.20750 0.93175 0.93096 0.88243 1.44103 1.41878 1.26521 1.19049 1.19155 1.42945 0.88930 0.87321 0.91708 1.25066 1.01848 0.96445 0.96308 1.70037 1.50782 1.14569 1.19139 0.86315 0.78351 0.80307 0.81885 1.21396 1.21574 1.20533 1.20838 0.91486 0.86450 0.99090 1.22334 0.99431 0.99905 0.96123 0.88073 0.88019 0.91105 0.91314 0.92615 0.92342 0.92490 0.91257 0.91245 0.77333 0.77776 0.90123 0.92872 0.92819 0.89359 0.96137 0.93589 0.96196 0.92365 0.92687 0.91941 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.15 13.88 29.01 0.40 -0.75 16 2 C -0.14 -1.11 4.67 -101.07 -0.47 -1.58 16 3 C -0.09 -0.59 6.10 -27.88 -0.17 -0.76 16 4 C -0.15 -0.93 9.90 37.16 0.37 -0.57 16 5 C 0.18 1.85 5.83 -5.20 -0.03 1.82 16 6 N -0.75 -8.49 5.55 -66.42 -0.37 -8.86 16 7 C 0.70 11.03 8.53 -86.92 -0.74 10.29 16 8 O -0.59 -12.03 16.01 5.29 0.08 -11.94 16 9 N -0.74 -10.80 5.08 -58.62 -0.30 -11.10 16 10 C 0.17 3.04 2.41 -67.87 -0.16 2.87 16 11 C -0.15 -3.02 5.66 -26.60 -0.15 -3.17 16 12 C 0.17 4.32 5.30 -3.71 -0.02 4.31 16 13 N -0.59 -15.02 3.00 -172.32 -0.52 -15.54 16 14 C -0.25 -7.00 9.58 -15.06 -0.14 -7.15 16 15 H 0.07 1.74 7.89 -52.48 -0.41 1.32 16 16 C 0.00 0.06 4.92 -17.43 -0.09 -0.03 16 17 N -0.90 -26.66 11.20 55.49 0.62 -26.03 16 18 Si 0.90 21.82 29.59 -169.99 -5.03 16.79 16 19 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 20 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 21 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 22 C 0.15 3.10 6.52 -3.71 -0.02 3.08 16 23 C -0.14 -2.33 5.55 -26.61 -0.15 -2.48 16 24 H 0.10 0.57 7.99 -52.48 -0.42 0.15 16 25 H 0.10 0.74 7.99 -52.49 -0.42 0.32 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.07 0.39 7.99 -51.93 -0.41 -0.03 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.07 0.81 7.99 -51.93 -0.41 0.40 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.39 3.38 8.48 -40.82 -0.35 3.04 16 34 H 0.39 4.44 8.62 -40.82 -0.35 4.09 16 35 H 0.08 1.65 7.58 -51.93 -0.39 1.26 16 36 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 37 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 38 H 0.09 2.44 6.06 -51.93 -0.31 2.13 16 39 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 40 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 41 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 42 H 0.06 1.17 7.93 -51.93 -0.41 0.75 16 43 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 44 H 0.06 1.04 8.14 -51.93 -0.42 0.61 16 LS Contribution 356.97 15.07 5.38 5.38 Total: -1.00 -32.56 356.97 -9.19 -41.75 By element: Atomic # 1 Polarization: 11.34 SS G_CDS: -7.69 Total: 3.66 kcal Atomic # 6 Polarization: 7.26 SS G_CDS: -1.38 Total: 5.89 kcal Atomic # 7 Polarization: -60.96 SS G_CDS: -0.56 Total: -61.52 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.08 Total: -11.94 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.03 Total: 16.79 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -32.56 -9.19 -41.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590804416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.509 kcal (2) G-P(sol) polarization free energy of solvation -32.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.246 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds