Wall clock time and date at job start Tue Mar 31 2020 05:32:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50702 * 119.99837 * 2 1 4 4 C 1.53006 * 109.46979 * 94.99918 * 3 2 1 5 5 C 1.50694 * 120.00114 * 179.97438 * 2 1 3 6 6 N 1.46502 * 109.47154 * 94.99946 * 5 2 1 7 7 C 1.34779 * 120.00207 * 180.02562 * 6 5 2 8 8 O 1.21587 * 119.99510 * 0.02562 * 7 6 5 9 9 N 1.34775 * 119.99840 * 180.02562 * 7 6 5 10 10 C 1.46503 * 119.99376 * 180.02562 * 9 7 6 11 11 C 1.53065 * 109.44591 * 84.79556 * 10 9 7 12 12 C 1.53192 * 109.29648 * 181.23295 * 11 10 9 13 13 N 1.46922 * 108.89269 * 305.57538 * 12 11 10 14 14 C 1.36942 * 120.62796 * 233.51528 * 13 12 11 15 15 H 1.08007 * 119.99636 * 151.83092 * 14 13 12 16 16 C 1.38806 * 120.00203 * 331.83144 * 14 13 12 17 17 N 1.31624 * 120.00191 * 343.08250 * 16 14 13 18 18 Si 1.86800 * 120.00146 * 163.07925 * 16 14 13 19 19 H 1.48503 * 109.47195 * 89.99708 * 18 16 14 20 20 H 1.48498 * 109.47355 * 210.00264 * 18 16 14 21 21 H 1.48504 * 109.46850 * 330.00278 * 18 16 14 22 22 C 1.46924 * 118.73925 * 53.53382 * 13 12 11 23 23 C 1.53049 * 109.45272 * 204.99544 * 10 9 7 24 24 H 1.08003 * 119.99906 * 359.97438 * 1 2 3 25 25 H 1.07995 * 120.00294 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47225 * 214.99811 * 3 2 1 27 27 H 1.08995 * 109.47600 * 335.00459 * 3 2 1 28 28 H 1.09000 * 109.47331 * 299.99831 * 4 3 2 29 29 H 1.09002 * 109.47113 * 59.99627 * 4 3 2 30 30 H 1.08996 * 109.47117 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.46999 * 335.00444 * 5 2 1 32 32 H 1.08999 * 109.47393 * 214.99946 * 5 2 1 33 33 H 0.96995 * 119.99680 * 0.02562 * 6 5 2 34 34 H 0.96995 * 120.00047 * 359.97438 * 9 7 6 35 35 H 1.08996 * 109.45813 * 324.96250 * 10 9 7 36 36 H 1.09005 * 109.39523 * 61.35360 * 11 10 9 37 37 H 1.09004 * 109.62174 * 301.25047 * 11 10 9 38 38 H 1.09003 * 109.58615 * 185.71531 * 12 11 10 39 39 H 1.08998 * 109.58372 * 65.43477 * 12 11 10 40 40 H 0.96995 * 120.00379 * 180.02562 * 17 16 14 41 41 H 1.09007 * 109.58325 * 66.18371 * 22 13 12 42 42 H 1.08996 * 109.58499 * 186.46256 * 22 13 12 43 43 H 1.09002 * 109.49883 * 58.67895 * 23 10 9 44 44 H 1.08997 * 109.52642 * 298.59203 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 2.4273 1.6840 1.4371 5 6 2.0635 -1.3050 0.0006 6 7 2.4119 -1.6684 -1.3752 7 6 3.0926 -2.8056 -1.6202 8 8 3.4171 -3.5301 -0.6992 9 7 3.4136 -3.1395 -2.8858 10 6 4.1530 -4.3759 -3.1520 11 6 3.1717 -5.5471 -3.2423 12 6 3.9510 -6.8425 -3.4900 13 7 4.7980 -6.6685 -4.6778 14 6 4.7349 -7.5590 -5.7162 15 1 4.9691 -7.2357 -6.7198 16 6 4.3700 -8.8771 -5.4790 17 7 4.4079 -9.3605 -4.2553 18 14 3.8251 -9.9650 -6.8964 19 1 5.0065 -10.6563 -7.4724 20 1 2.8540 -10.9735 -6.4015 21 1 3.1818 -9.1299 -7.9424 22 6 5.7142 -5.5211 -4.7302 23 6 4.9152 -4.2398 -4.4722 24 1 -0.5400 0.9353 0.0004 25 1 -0.5400 -0.9352 -0.0004 26 1 2.9741 1.1989 -0.5894 27 1 1.4386 2.0855 -0.4342 28 1 1.5166 1.7902 2.0265 29 1 3.0522 0.9036 1.8714 30 1 2.9727 2.6277 1.4371 31 1 1.4385 -2.0852 0.4352 32 1 2.9742 -1.1985 0.5900 33 1 2.1527 -1.0905 -2.1099 34 1 3.1544 -2.5616 -3.6204 35 1 4.8593 -4.5581 -2.3421 36 1 2.4789 -5.3761 -4.0663 37 1 2.6144 -5.6305 -2.3092 38 1 3.2528 -7.6630 -3.6560 39 1 4.5759 -7.0641 -2.6248 40 1 4.1533 -10.2816 -4.0896 41 1 6.4832 -5.6325 -3.9657 42 1 6.1813 -5.4712 -5.7137 43 1 5.5971 -3.3916 -4.4129 44 1 4.2081 -4.0819 -5.2865 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590804416.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:53 Heat of formation + Delta-G solvation = -26.231216 kcal Electronic energy + Delta-G solvation = -22123.622929 eV Core-core repulsion = 18882.536910 eV Total energy + Delta-G solvation = -3241.086018 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.21207 -39.21386 -37.88572 -35.96404 -34.86769 -33.77766 -31.79812 -31.44669 -30.89370 -27.56764 -26.42052 -24.40439 -23.90872 -23.65247 -21.83813 -21.05799 -19.98865 -19.02492 -18.51770 -17.45462 -16.79228 -16.63709 -16.02465 -15.87405 -15.63617 -15.34728 -15.29168 -14.97398 -14.74701 -14.42036 -14.03319 -13.95070 -13.73374 -13.23382 -13.15980 -13.00732 -12.76158 -12.64826 -12.53936 -12.11459 -12.06647 -11.85520 -11.74425 -11.66570 -11.53191 -11.46297 -11.23166 -10.57904 -10.31808 -10.17131 -9.73013 -8.70686 -7.86838 -5.33377 1.02093 1.47678 1.49317 1.59188 1.94451 2.17890 2.52219 3.28134 3.40374 3.68082 3.74388 3.87387 3.89504 4.10779 4.35628 4.35905 4.48636 4.52857 4.53230 4.67632 4.68978 4.78203 4.81171 4.88881 4.96628 5.06137 5.09645 5.11255 5.14111 5.16262 5.32822 5.38889 5.44814 5.48136 5.60900 5.64088 5.65309 5.70182 5.87041 6.06342 6.39256 7.13517 7.15534 7.62505 7.84854 8.37924 9.20412 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.039859 B = 0.002928 C = 0.002871 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 702.314285 B = 9560.111662 C = 9750.723841 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.148 4.148 3 C -0.085 4.085 4 C -0.149 4.149 5 C 0.175 3.825 6 N -0.727 5.727 7 C 0.697 3.303 8 O -0.640 6.640 9 N -0.724 5.724 10 C 0.180 3.820 11 C -0.130 4.130 12 C 0.183 3.817 13 N -0.609 5.609 14 C -0.261 4.261 15 H 0.075 0.925 16 C -0.056 4.056 17 N -0.940 5.940 18 Si 0.970 3.030 19 H -0.284 1.284 20 H -0.296 1.296 21 H -0.266 1.266 22 C 0.141 3.859 23 C -0.120 4.120 24 H 0.122 0.878 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.085 0.915 28 H 0.058 0.942 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.054 0.946 32 H 0.057 0.943 33 H 0.411 0.589 34 H 0.411 0.589 35 H 0.054 0.946 36 H 0.061 0.939 37 H 0.042 0.958 38 H 0.054 0.946 39 H -0.013 1.013 40 H 0.249 0.751 41 H 0.011 0.989 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.055 24.693 4.628 26.095 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.149 4.149 3 C -0.123 4.123 4 C -0.206 4.206 5 C 0.051 3.949 6 N -0.384 5.384 7 C 0.397 3.603 8 O -0.522 6.522 9 N -0.379 5.379 10 C 0.075 3.925 11 C -0.170 4.170 12 C 0.057 3.943 13 N -0.333 5.333 14 C -0.391 4.391 15 H 0.092 0.908 16 C -0.251 4.251 17 N -0.586 5.586 18 Si 0.798 3.202 19 H -0.210 1.210 20 H -0.222 1.222 21 H -0.191 1.191 22 C 0.015 3.985 23 C -0.159 4.159 24 H 0.140 0.860 25 H 0.115 0.885 26 H 0.085 0.915 27 H 0.104 0.896 28 H 0.077 0.923 29 H 0.064 0.936 30 H 0.084 0.916 31 H 0.072 0.928 32 H 0.076 0.924 33 H 0.247 0.753 34 H 0.247 0.753 35 H 0.072 0.928 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.073 0.927 39 H 0.006 0.994 40 H 0.058 0.942 41 H 0.029 0.971 42 H 0.088 0.912 43 H 0.110 0.890 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.773 23.902 5.506 25.446 hybrid contribution -0.368 -0.906 -0.757 1.237 sum -7.140 22.996 4.750 24.543 Atomic orbital electron populations 1.24057 0.94841 1.03114 0.96981 1.21692 0.95519 0.94362 1.03299 1.20602 1.00108 0.93570 0.97979 1.21748 1.01669 1.01357 0.95810 1.20074 0.98618 0.94071 0.82118 1.44973 1.60253 1.23214 1.09928 1.16225 0.78889 0.81777 0.83449 1.90910 1.61586 1.54583 1.45082 1.45090 1.60866 1.25603 1.06361 1.20512 0.92185 0.82231 0.97596 1.22320 0.98461 0.96478 0.99764 1.20450 0.92361 0.94302 0.87230 1.44354 1.43039 1.27482 1.18432 1.19572 1.41868 0.89375 0.88291 0.90770 1.25902 1.02544 0.98022 0.98640 1.70215 1.52406 1.14588 1.21372 0.85241 0.77655 0.78299 0.79028 1.21042 1.22250 1.19089 1.21054 0.91320 0.86649 0.99481 1.22124 0.99646 0.98742 0.95389 0.85966 0.88503 0.91458 0.89649 0.92261 0.93634 0.91575 0.92795 0.92417 0.75255 0.75265 0.92808 0.92061 0.93937 0.92729 0.99441 0.94190 0.97113 0.91238 0.89016 0.90539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.74 13.88 67.78 0.94 -0.80 16 2 C -0.15 -2.01 4.67 -16.49 -0.08 -2.09 16 3 C -0.09 -0.92 6.10 29.85 0.18 -0.73 16 4 C -0.15 -1.63 9.90 71.98 0.71 -0.91 16 5 C 0.17 3.58 5.83 85.63 0.50 4.07 16 6 N -0.73 -15.31 5.55 -482.30 -2.68 -17.99 16 7 C 0.70 21.28 8.53 179.05 1.53 22.80 16 8 O -0.64 -26.56 16.01 -3.99 -0.06 -26.62 16 9 N -0.72 -19.63 5.08 -457.63 -2.33 -21.96 16 10 C 0.18 6.31 2.41 45.03 0.11 6.42 16 11 C -0.13 -5.40 5.66 30.68 0.17 -5.22 16 12 C 0.18 9.48 5.30 86.36 0.46 9.94 16 13 N -0.61 -31.13 3.00 -699.10 -2.09 -33.22 16 14 C -0.26 -14.39 9.58 84.03 0.81 -13.59 16 15 H 0.07 3.88 7.89 -2.91 -0.02 3.86 16 16 C -0.06 -3.19 4.92 84.86 0.42 -2.78 16 17 N -0.94 -57.58 11.20 21.65 0.24 -57.33 16 18 Si 0.97 45.26 29.59 68.60 2.03 47.29 16 19 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 20 H -0.30 -13.98 7.11 99.48 0.71 -13.28 16 21 H -0.27 -11.71 7.11 99.48 0.71 -11.00 16 22 C 0.14 5.73 6.52 86.36 0.56 6.29 16 23 C -0.12 -3.71 5.55 30.67 0.17 -3.54 16 24 H 0.12 0.93 7.99 -2.91 -0.02 0.91 16 25 H 0.10 1.22 7.99 -2.91 -0.02 1.20 16 26 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.08 0.66 7.99 -2.39 -0.02 0.64 16 28 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.04 0.61 8.14 -2.39 -0.02 0.59 16 30 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 31 H 0.05 1.27 7.99 -2.39 -0.02 1.26 16 32 H 0.06 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.41 5.87 8.48 -92.71 -0.79 5.08 16 34 H 0.41 7.84 8.62 -92.71 -0.80 7.04 16 35 H 0.05 2.22 7.58 -2.39 -0.02 2.20 16 36 H 0.06 2.44 8.14 -2.38 -0.02 2.42 16 37 H 0.04 1.84 8.14 -2.38 -0.02 1.82 16 38 H 0.05 3.17 6.06 -2.39 -0.01 3.16 16 39 H -0.01 -0.71 8.14 -2.39 -0.02 -0.73 16 40 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 41 H 0.01 0.46 8.14 -2.38 -0.02 0.44 16 42 H 0.07 2.65 7.93 -2.39 -0.02 2.63 16 43 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 44 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -73.30 356.97 0.98 -72.31 By element: Atomic # 1 Polarization: 18.25 SS G_CDS: -0.61 Total: 17.65 kcal Atomic # 6 Polarization: 13.39 SS G_CDS: 6.48 Total: 19.87 kcal Atomic # 7 Polarization: -123.65 SS G_CDS: -6.86 Total: -130.50 kcal Atomic # 8 Polarization: -26.56 SS G_CDS: -0.06 Total: -26.62 kcal Atomic # 14 Polarization: 45.26 SS G_CDS: 2.03 Total: 47.29 kcal Total: -73.30 0.98 -72.31 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590804416.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.083 kcal (2) G-P(sol) polarization free energy of solvation -73.298 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.315 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds