Wall clock time and date at job start Tue Mar 31 2020 05:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46925 * 2 1 4 4 C 1.31010 * 119.99816 * 127.74457 * 3 2 1 5 5 C 1.50697 * 120.00173 * 6.86790 * 4 3 2 6 6 N 1.46499 * 109.46857 * 126.06989 * 5 4 3 7 7 C 1.34777 * 119.99890 * 180.02562 * 6 5 4 8 8 O 1.21592 * 120.00257 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00058 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99857 * 179.97438 * 9 7 6 11 11 C 1.53046 * 109.45589 * 275.02278 * 10 9 7 12 12 C 1.53192 * 109.30916 * 178.60368 * 11 10 9 13 13 N 1.46924 * 108.76519 * 54.65315 * 12 11 10 14 14 C 1.36941 * 120.62620 * 126.40588 * 13 12 11 15 15 H 1.08003 * 120.00159 * 324.01583 * 14 13 12 16 16 C 1.38815 * 119.99863 * 144.02773 * 14 13 12 17 17 N 1.31621 * 119.99684 * 358.96076 * 16 14 13 18 18 Si 1.86796 * 120.00228 * 178.97148 * 16 14 13 19 19 H 1.48506 * 109.47455 * 89.99021 * 18 16 14 20 20 H 1.48497 * 109.47279 * 209.99482 * 18 16 14 21 21 H 1.48508 * 109.46893 * 329.99713 * 18 16 14 22 22 C 1.46921 * 118.74431 * 306.38241 * 13 12 11 23 23 C 1.53032 * 109.46012 * 154.96956 * 10 9 7 24 24 H 1.08994 * 109.46967 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47102 * 300.00522 * 1 2 3 26 26 H 1.09007 * 109.46358 * 60.00061 * 1 2 3 27 27 H 1.08990 * 109.47457 * 239.99792 * 2 1 3 28 28 H 1.09007 * 109.46622 * 119.99457 * 2 1 3 29 29 H 1.07992 * 120.00358 * 307.46011 * 3 2 1 30 30 H 1.08001 * 119.99594 * 186.87327 * 4 3 2 31 31 H 1.08997 * 109.47507 * 246.06948 * 5 4 3 32 32 H 1.09005 * 109.46737 * 6.07202 * 5 4 3 33 33 H 0.97000 * 120.00147 * 359.97438 * 6 5 4 34 34 H 0.97000 * 119.99978 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.46286 * 34.99122 * 10 9 7 36 36 H 1.09002 * 109.49464 * 298.56768 * 11 10 9 37 37 H 1.08998 * 109.49645 * 58.66561 * 11 10 9 38 38 H 1.09000 * 109.59906 * 294.86277 * 12 11 10 39 39 H 1.09000 * 109.69830 * 174.50281 * 12 11 10 40 40 H 0.97002 * 119.99434 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.58540 * 293.82828 * 22 13 12 42 42 H 1.08997 * 109.70954 * 173.46534 * 22 13 12 43 43 H 1.09001 * 109.50007 * 301.33605 * 23 10 9 44 44 H 1.09006 * 109.50098 * 61.42919 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9055 1.8069 0.8972 5 6 3.5239 0.7977 1.8299 6 7 4.9838 0.8924 1.7533 7 6 5.7522 0.0798 2.5055 8 8 5.2338 -0.7315 3.2481 9 7 7.0953 0.1673 2.4354 10 6 7.9305 -0.7156 3.2535 11 6 8.1093 -0.1033 4.6447 12 6 8.9538 -1.0456 5.5082 13 7 10.2137 -1.3275 4.8068 14 6 11.4178 -1.1223 5.4259 15 1 11.5422 -0.2899 6.1027 16 6 12.4786 -1.9842 5.1834 17 7 12.3211 -3.0103 4.3743 18 14 14.1296 -1.6879 6.0055 19 1 14.1701 -2.4025 7.3067 20 1 15.2168 -2.1931 5.1292 21 1 14.3143 -0.2322 6.2344 22 6 10.1572 -1.8342 3.4289 23 6 9.2987 -0.8832 2.5888 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6761 2.1195 -0.7423 30 1 3.1820 2.8485 0.9683 31 1 3.1998 1.0000 2.8508 32 1 3.2091 -0.2050 1.5407 33 1 5.3975 1.5393 1.1606 34 1 7.5090 0.8147 1.8433 35 1 7.4492 -1.6893 3.3445 36 1 8.6130 0.8593 4.5565 37 1 7.1329 0.0376 5.1083 38 1 8.4108 -1.9763 5.6724 39 1 9.1672 -0.5731 6.4670 40 1 13.0623 -3.6128 4.2052 41 1 9.7122 -2.8292 3.4234 42 1 11.1636 -1.8816 3.0131 43 1 9.1692 -1.2974 1.5889 44 1 9.7913 0.0868 2.5202 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000590804731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:56 Heat of formation + Delta-G solvation = -1.390913 kcal Electronic energy + Delta-G solvation = -21908.175201 eV Core-core repulsion = 18668.166339 eV Total energy + Delta-G solvation = -3240.008862 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.91890 -37.68921 -36.83409 -34.33330 -34.10611 -32.08852 -30.92971 -29.98189 -29.22711 -26.22895 -24.68991 -23.59543 -22.19325 -21.89464 -20.54037 -19.43415 -19.09821 -17.77871 -16.76063 -16.52973 -15.77285 -15.17182 -14.83305 -14.55060 -14.28090 -14.21890 -13.86859 -13.61170 -13.46813 -13.00043 -12.88104 -12.47839 -12.42896 -12.28434 -12.16986 -11.41962 -11.35928 -10.94839 -10.86773 -10.82137 -10.74024 -10.41594 -10.21789 -10.05853 -9.97080 -9.77997 -9.54066 -9.46923 -9.00320 -8.51336 -8.40860 -6.51772 -5.77563 -3.29950 1.69004 3.02655 3.38313 3.43953 3.44673 3.45782 4.37873 4.47396 4.49756 4.66415 4.79026 4.98933 5.11820 5.26871 5.40891 5.44908 5.48452 5.55798 5.59524 5.66547 5.69953 5.75241 5.85482 5.96781 6.15627 6.24560 6.35857 6.36667 6.43808 6.55528 6.57646 6.65456 6.68539 6.87301 6.98136 7.06126 7.18943 7.40870 7.74172 7.81121 8.22076 8.54083 8.82426 9.26400 9.85344 10.46622 11.30480 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.053688 B = 0.002652 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.402923 B =10554.489040 C =10617.299418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.115 4.115 3 C -0.133 4.133 4 C -0.180 4.180 5 C 0.159 3.841 6 N -0.749 5.749 7 C 0.701 3.299 8 O -0.592 6.592 9 N -0.739 5.739 10 C 0.169 3.831 11 C -0.139 4.139 12 C 0.148 3.852 13 N -0.594 5.594 14 C -0.253 4.253 15 H 0.063 0.937 16 C 0.007 3.993 17 N -0.905 5.905 18 Si 0.905 3.095 19 H -0.286 1.286 20 H -0.290 1.290 21 H -0.279 1.279 22 C 0.175 3.825 23 C -0.147 4.147 24 H 0.057 0.943 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.113 0.887 30 H 0.115 0.885 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.394 0.606 34 H 0.390 0.610 35 H 0.081 0.919 36 H 0.055 0.945 37 H 0.053 0.947 38 H 0.020 0.980 39 H 0.055 0.945 40 H 0.255 0.745 41 H 0.020 0.980 42 H 0.095 0.905 43 H 0.052 0.948 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.151 9.653 -10.614 23.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.152 4.152 3 C -0.152 4.152 4 C -0.198 4.198 5 C 0.036 3.964 6 N -0.405 5.405 7 C 0.400 3.600 8 O -0.470 6.470 9 N -0.393 5.393 10 C 0.065 3.935 11 C -0.180 4.180 12 C 0.021 3.979 13 N -0.317 5.317 14 C -0.383 4.383 15 H 0.080 0.920 16 C -0.191 4.191 17 N -0.549 5.549 18 Si 0.734 3.266 19 H -0.213 1.213 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.049 3.951 23 C -0.187 4.187 24 H 0.076 0.924 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.091 0.909 28 H 0.099 0.901 29 H 0.131 0.869 30 H 0.133 0.867 31 H 0.087 0.913 32 H 0.096 0.904 33 H 0.227 0.773 34 H 0.223 0.777 35 H 0.099 0.901 36 H 0.074 0.926 37 H 0.072 0.928 38 H 0.038 0.962 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.038 0.962 42 H 0.113 0.887 43 H 0.071 0.929 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.489 8.736 -9.935 22.735 hybrid contribution 1.204 0.905 -0.236 1.524 sum -17.285 9.641 -10.171 22.253 Atomic orbital electron populations 1.21690 0.94867 1.01888 1.01887 1.20915 0.96328 0.94586 1.03376 1.22918 0.97534 0.97592 0.97112 1.22863 0.99757 0.99421 0.97808 1.20290 0.78710 0.98485 0.98957 1.45098 1.06169 1.41600 1.47661 1.16032 0.81774 0.81415 0.80731 1.90917 1.73025 1.40011 1.43065 1.45556 1.04045 1.42071 1.47592 1.20912 0.90004 0.92773 0.89828 1.22394 0.99527 1.00068 0.95983 1.20900 0.87573 0.95316 0.94146 1.44013 1.00621 1.77041 1.10011 1.19146 0.88418 1.06919 1.23836 0.91977 1.25339 0.99416 0.95333 0.99056 1.69916 1.31219 1.15780 1.37996 0.86267 0.83444 0.77740 0.79127 1.21277 1.21654 1.20458 1.20800 0.99020 0.91716 0.83611 1.22578 0.94760 1.02268 0.99106 0.92385 0.92556 0.92743 0.90923 0.90121 0.86888 0.86673 0.91267 0.90420 0.77299 0.77675 0.90131 0.92574 0.92783 0.96178 0.92643 0.93522 0.96212 0.88700 0.92895 0.92373 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 9.90 37.16 0.37 -0.52 16 2 C -0.12 -0.82 6.03 -27.88 -0.17 -0.99 16 3 C -0.13 -0.92 9.51 -36.03 -0.34 -1.26 16 4 C -0.18 -1.37 9.63 -36.03 -0.35 -1.71 16 5 C 0.16 1.65 5.79 -5.20 -0.03 1.62 16 6 N -0.75 -8.47 5.55 -66.41 -0.37 -8.84 16 7 C 0.70 10.97 8.53 -86.91 -0.74 10.23 16 8 O -0.59 -11.85 16.01 5.28 0.08 -11.76 16 9 N -0.74 -10.91 5.08 -58.63 -0.30 -11.21 16 10 C 0.17 3.07 2.42 -67.89 -0.16 2.90 16 11 C -0.14 -2.66 5.65 -26.61 -0.15 -2.81 16 12 C 0.15 3.27 6.52 -3.71 -0.02 3.25 16 13 N -0.59 -15.10 2.98 -172.32 -0.51 -15.62 16 14 C -0.25 -6.98 9.55 -15.06 -0.14 -7.12 16 15 H 0.06 1.69 7.83 -52.48 -0.41 1.27 16 16 C 0.01 0.20 5.23 -17.43 -0.09 0.11 16 17 N -0.91 -26.16 10.89 55.49 0.60 -25.55 16 18 Si 0.90 21.65 29.55 -169.99 -5.02 16.62 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 21 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 22 C 0.17 4.18 5.22 -3.71 -0.02 4.16 16 23 C -0.15 -2.76 5.55 -26.61 -0.15 -2.91 16 24 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 25 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 26 H 0.05 0.29 8.14 -51.92 -0.42 -0.13 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.08 0.66 5.27 -51.92 -0.27 0.39 16 29 H 0.11 0.63 8.06 -52.49 -0.42 0.20 16 30 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 31 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 32 H 0.08 0.87 5.24 -51.93 -0.27 0.60 16 33 H 0.39 3.32 8.48 -40.82 -0.35 2.97 16 34 H 0.39 4.59 8.62 -40.82 -0.35 4.24 16 35 H 0.08 1.66 7.58 -51.93 -0.39 1.27 16 36 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.06 1.20 7.93 -51.93 -0.41 0.79 16 40 H 0.25 7.11 8.31 -40.82 -0.34 6.77 16 41 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.09 2.51 6.16 -51.93 -0.32 2.19 16 43 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 351.99 15.07 5.30 5.30 Total: -1.00 -32.01 351.99 -9.62 -41.64 By element: Atomic # 1 Polarization: 11.89 SS G_CDS: -7.41 Total: 4.48 kcal Atomic # 6 Polarization: 6.94 SS G_CDS: -2.00 Total: 4.94 kcal Atomic # 7 Polarization: -60.64 SS G_CDS: -0.58 Total: -61.22 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.08 Total: -11.76 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -5.02 Total: 16.62 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -32.01 -9.62 -41.64 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590804731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.246 kcal (2) G-P(sol) polarization free energy of solvation -32.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.233 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.624 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.637 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds