Wall clock time and date at job start Tue Mar 31 2020 05:32:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.50700 * 109.46925 * 2 1 4 4 C 1.31010 * 119.99816 * 127.74457 * 3 2 1 5 5 C 1.50697 * 120.00173 * 6.86790 * 4 3 2 6 6 N 1.46499 * 109.46857 * 126.06989 * 5 4 3 7 7 C 1.34777 * 119.99890 * 180.02562 * 6 5 4 8 8 O 1.21592 * 120.00257 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00058 * 180.02562 * 7 6 5 10 10 C 1.46504 * 119.99857 * 179.97438 * 9 7 6 11 11 C 1.53046 * 109.45589 * 275.02278 * 10 9 7 12 12 C 1.53192 * 109.30916 * 178.60368 * 11 10 9 13 13 N 1.46924 * 108.76519 * 54.65315 * 12 11 10 14 14 C 1.36941 * 120.62620 * 126.40588 * 13 12 11 15 15 H 1.08003 * 120.00159 * 324.01583 * 14 13 12 16 16 C 1.38815 * 119.99863 * 144.02773 * 14 13 12 17 17 N 1.31621 * 119.99684 * 358.96076 * 16 14 13 18 18 Si 1.86796 * 120.00228 * 178.97148 * 16 14 13 19 19 H 1.48506 * 109.47455 * 89.99021 * 18 16 14 20 20 H 1.48497 * 109.47279 * 209.99482 * 18 16 14 21 21 H 1.48508 * 109.46893 * 329.99713 * 18 16 14 22 22 C 1.46921 * 118.74431 * 306.38241 * 13 12 11 23 23 C 1.53032 * 109.46012 * 154.96956 * 10 9 7 24 24 H 1.08994 * 109.46967 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47102 * 300.00522 * 1 2 3 26 26 H 1.09007 * 109.46358 * 60.00061 * 1 2 3 27 27 H 1.08990 * 109.47457 * 239.99792 * 2 1 3 28 28 H 1.09007 * 109.46622 * 119.99457 * 2 1 3 29 29 H 1.07992 * 120.00358 * 307.46011 * 3 2 1 30 30 H 1.08001 * 119.99594 * 186.87327 * 4 3 2 31 31 H 1.08997 * 109.47507 * 246.06948 * 5 4 3 32 32 H 1.09005 * 109.46737 * 6.07202 * 5 4 3 33 33 H 0.97000 * 120.00147 * 359.97438 * 6 5 4 34 34 H 0.97000 * 119.99978 * 359.97438 * 9 7 6 35 35 H 1.09000 * 109.46286 * 34.99122 * 10 9 7 36 36 H 1.09002 * 109.49464 * 298.56768 * 11 10 9 37 37 H 1.08998 * 109.49645 * 58.66561 * 11 10 9 38 38 H 1.09000 * 109.59906 * 294.86277 * 12 11 10 39 39 H 1.09000 * 109.69830 * 174.50281 * 12 11 10 40 40 H 0.97002 * 119.99434 * 180.02562 * 17 16 14 41 41 H 1.08998 * 109.58540 * 293.82828 * 22 13 12 42 42 H 1.08997 * 109.70954 * 173.46534 * 22 13 12 43 43 H 1.09001 * 109.50007 * 301.33605 * 23 10 9 44 44 H 1.09006 * 109.50098 * 61.42919 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.9055 1.8069 0.8972 5 6 3.5239 0.7977 1.8299 6 7 4.9838 0.8924 1.7533 7 6 5.7522 0.0798 2.5055 8 8 5.2338 -0.7315 3.2481 9 7 7.0953 0.1673 2.4354 10 6 7.9305 -0.7156 3.2535 11 6 8.1093 -0.1033 4.6447 12 6 8.9538 -1.0456 5.5082 13 7 10.2137 -1.3275 4.8068 14 6 11.4178 -1.1223 5.4259 15 1 11.5422 -0.2899 6.1027 16 6 12.4786 -1.9842 5.1834 17 7 12.3211 -3.0103 4.3743 18 14 14.1296 -1.6879 6.0055 19 1 14.1701 -2.4025 7.3067 20 1 15.2168 -2.1931 5.1292 21 1 14.3143 -0.2322 6.2344 22 6 10.1572 -1.8342 3.4289 23 6 9.2987 -0.8832 2.5888 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5139 -0.8901 27 1 1.8934 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6761 2.1195 -0.7423 30 1 3.1820 2.8485 0.9683 31 1 3.1998 1.0000 2.8508 32 1 3.2091 -0.2050 1.5407 33 1 5.3975 1.5393 1.1606 34 1 7.5090 0.8147 1.8433 35 1 7.4492 -1.6893 3.3445 36 1 8.6130 0.8593 4.5565 37 1 7.1329 0.0376 5.1083 38 1 8.4108 -1.9763 5.6724 39 1 9.1672 -0.5731 6.4670 40 1 13.0623 -3.6128 4.2052 41 1 9.7122 -2.8292 3.4234 42 1 11.1636 -1.8816 3.0131 43 1 9.1692 -1.2974 1.5889 44 1 9.7913 0.0868 2.5202 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000590804731.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:32:55 Heat of formation + Delta-G solvation = -22.426977 kcal Electronic energy + Delta-G solvation = -21909.087393 eV Core-core repulsion = 18668.166339 eV Total energy + Delta-G solvation = -3240.921054 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.18778 -39.16993 -37.75801 -35.94528 -35.12701 -33.84202 -31.94836 -31.54692 -30.83537 -27.40608 -26.32742 -24.16338 -23.90620 -23.57989 -21.82024 -21.04776 -20.02694 -19.05730 -18.40767 -17.56337 -16.97482 -16.68715 -16.26927 -15.78947 -15.40550 -15.32572 -15.19407 -14.88735 -14.74359 -14.68215 -14.34162 -14.02087 -13.52359 -13.21319 -12.96955 -12.86966 -12.81881 -12.70971 -12.52331 -12.18683 -11.99560 -11.88211 -11.87355 -11.58710 -11.45232 -11.40562 -11.23013 -10.55457 -10.37389 -10.02065 -9.63667 -8.56712 -7.86962 -5.43491 1.05581 1.48497 1.49841 1.58874 1.93284 2.18845 2.50973 3.29294 3.41655 3.70097 3.78055 3.93001 4.09247 4.09337 4.20711 4.36418 4.43111 4.48211 4.49046 4.67562 4.68217 4.75815 4.84728 4.88718 4.95435 5.05468 5.08483 5.11708 5.18586 5.21920 5.31843 5.35329 5.48240 5.51962 5.61854 5.65710 5.68618 5.76178 5.88618 6.08224 6.45614 7.16261 7.18077 7.63004 7.83526 8.40210 9.19052 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.053688 B = 0.002652 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 521.402923 B =10554.489040 C =10617.299418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.120 4.120 3 C -0.123 4.123 4 C -0.184 4.184 5 C 0.157 3.843 6 N -0.729 5.729 7 C 0.697 3.303 8 O -0.639 6.639 9 N -0.726 5.726 10 C 0.181 3.819 11 C -0.123 4.123 12 C 0.145 3.855 13 N -0.611 5.611 14 C -0.266 4.266 15 H 0.065 0.935 16 C -0.045 4.045 17 N -0.935 5.935 18 Si 0.972 3.028 19 H -0.287 1.287 20 H -0.291 1.291 21 H -0.267 1.267 22 C 0.179 3.821 23 C -0.128 4.128 24 H 0.057 0.943 25 H 0.053 0.947 26 H 0.065 0.935 27 H 0.075 0.925 28 H 0.064 0.936 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.055 0.945 32 H 0.068 0.932 33 H 0.412 0.588 34 H 0.410 0.590 35 H 0.054 0.946 36 H 0.065 0.935 37 H 0.056 0.944 38 H 0.006 0.994 39 H 0.058 0.942 40 H 0.252 0.748 41 H -0.008 1.008 42 H 0.067 0.933 43 H 0.075 0.925 44 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.754 11.955 -11.835 25.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.157 4.157 3 C -0.141 4.141 4 C -0.202 4.202 5 C 0.034 3.966 6 N -0.385 5.385 7 C 0.397 3.603 8 O -0.521 6.521 9 N -0.381 5.381 10 C 0.075 3.925 11 C -0.164 4.164 12 C 0.019 3.981 13 N -0.334 5.334 14 C -0.396 4.396 15 H 0.083 0.917 16 C -0.241 4.241 17 N -0.580 5.580 18 Si 0.800 3.200 19 H -0.213 1.213 20 H -0.218 1.218 21 H -0.192 1.192 22 C 0.053 3.947 23 C -0.168 4.168 24 H 0.076 0.924 25 H 0.072 0.928 26 H 0.084 0.916 27 H 0.093 0.907 28 H 0.083 0.917 29 H 0.153 0.847 30 H 0.152 0.848 31 H 0.074 0.926 32 H 0.085 0.915 33 H 0.248 0.752 34 H 0.246 0.754 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.024 0.976 39 H 0.076 0.924 40 H 0.061 0.939 41 H 0.011 0.989 42 H 0.085 0.915 43 H 0.093 0.907 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -19.116 11.108 -11.203 24.785 hybrid contribution 1.295 0.153 0.134 1.311 sum -17.821 11.260 -11.068 23.810 Atomic orbital electron populations 1.21680 0.94026 1.02129 1.02341 1.20949 0.97120 0.94936 1.02723 1.23112 0.96601 0.97555 0.96880 1.22763 1.00420 0.99459 0.97593 1.20337 0.78014 0.99129 0.99117 1.44935 1.06394 1.40630 1.46566 1.16192 0.81937 0.81416 0.80730 1.90894 1.73858 1.42117 1.45195 1.45133 1.03660 1.41886 1.47400 1.20491 0.89844 0.92227 0.89899 1.22187 0.98861 0.99443 0.95892 1.20973 0.86778 0.95466 0.94881 1.44258 1.01095 1.77204 1.10886 1.19465 0.89393 1.07003 1.23777 0.91736 1.26105 1.02968 0.95276 0.99768 1.70099 1.32008 1.16697 1.39219 0.85212 0.79062 0.78066 0.77707 1.21334 1.21755 1.19189 1.20598 0.98261 0.91885 0.83941 1.22281 0.94018 1.01444 0.99031 0.92352 0.92764 0.91577 0.90667 0.91721 0.84740 0.84845 0.92639 0.91455 0.75199 0.75405 0.92814 0.91610 0.92557 0.97597 0.92392 0.93922 0.98943 0.91451 0.90665 0.91178 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.90 71.98 0.71 -0.84 16 2 C -0.12 -1.56 6.03 29.85 0.18 -1.38 16 3 C -0.12 -1.39 9.51 25.64 0.24 -1.14 16 4 C -0.18 -2.35 9.63 25.64 0.25 -2.11 16 5 C 0.16 3.09 5.79 85.63 0.50 3.59 16 6 N -0.73 -15.09 5.55 -482.29 -2.68 -17.77 16 7 C 0.70 20.97 8.53 179.05 1.53 22.50 16 8 O -0.64 -25.62 16.01 -4.01 -0.06 -25.69 16 9 N -0.73 -19.99 5.08 -457.67 -2.33 -22.32 16 10 C 0.18 6.42 2.42 45.02 0.11 6.53 16 11 C -0.12 -4.61 5.65 30.67 0.17 -4.44 16 12 C 0.15 6.50 6.52 86.36 0.56 7.07 16 13 N -0.61 -31.44 2.98 -699.11 -2.08 -33.52 16 14 C -0.27 -14.74 9.55 84.03 0.80 -13.94 16 15 H 0.07 3.48 7.83 -2.91 -0.02 3.45 16 16 C -0.05 -2.54 5.23 84.86 0.44 -2.10 16 17 N -0.93 -55.22 10.89 21.65 0.24 -54.98 16 18 Si 0.97 44.69 29.55 68.60 2.03 46.71 16 19 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 20 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 21 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16 22 C 0.18 8.74 5.22 86.36 0.45 9.19 16 23 C -0.13 -4.66 5.55 30.67 0.17 -4.49 16 24 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 25 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 26 H 0.07 0.56 8.14 -2.38 -0.02 0.54 16 27 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.06 1.05 5.27 -2.38 -0.01 1.04 16 29 H 0.13 1.01 8.06 -2.91 -0.02 0.98 16 30 H 0.13 1.26 8.06 -2.91 -0.02 1.23 16 31 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.49 5.24 -2.38 -0.01 1.48 16 33 H 0.41 5.68 8.48 -92.71 -0.79 4.90 16 34 H 0.41 8.30 8.62 -92.71 -0.80 7.51 16 35 H 0.05 2.24 7.58 -2.39 -0.02 2.22 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 38 H 0.01 0.28 8.14 -2.39 -0.02 0.27 16 39 H 0.06 2.51 7.93 -2.39 -0.02 2.49 16 40 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 41 H -0.01 -0.40 8.14 -2.39 -0.02 -0.42 16 42 H 0.07 3.65 6.16 -2.39 -0.01 3.64 16 43 H 0.07 2.42 8.14 -2.39 -0.02 2.40 16 44 H 0.07 2.42 8.14 -2.38 -0.02 2.40 16 Total: -1.00 -70.33 351.99 0.63 -69.70 By element: Atomic # 1 Polarization: 20.04 SS G_CDS: -0.59 Total: 19.44 kcal Atomic # 6 Polarization: 12.31 SS G_CDS: 6.12 Total: 18.43 kcal Atomic # 7 Polarization: -121.74 SS G_CDS: -6.85 Total: -128.60 kcal Atomic # 8 Polarization: -25.62 SS G_CDS: -0.06 Total: -25.69 kcal Atomic # 14 Polarization: 44.69 SS G_CDS: 2.03 Total: 46.71 kcal Total: -70.33 0.63 -69.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000590804731.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.269 kcal (2) G-P(sol) polarization free energy of solvation -70.329 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.061 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.427 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds