Wall clock time and date at job start Tue Mar 31 2020 05:27:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 115.56394 * 2 1 4 4 C 1.52998 * 117.49970 * 214.30849 * 2 1 3 5 5 C 1.52992 * 60.00249 * 252.50987 * 4 2 1 6 6 H 1.09001 * 117.50156 * 252.48693 * 5 4 2 7 7 N 1.46503 * 117.49939 * 107.48777 * 5 4 2 8 8 C 1.34775 * 119.99924 * 136.38767 * 7 5 4 9 9 O 1.21589 * 120.00055 * 0.02562 * 8 7 5 10 10 N 1.34781 * 119.99809 * 179.97438 * 8 7 5 11 11 C 1.46495 * 119.99813 * 180.02562 * 10 8 7 12 12 C 1.53038 * 109.46141 * 155.00125 * 11 10 8 13 13 C 1.53187 * 109.31585 * 181.37134 * 12 11 10 14 14 N 1.46929 * 108.77796 * 305.36471 * 13 12 11 15 15 C 1.36928 * 120.63464 * 233.58349 * 14 13 12 16 16 H 1.08003 * 119.99587 * 29.67767 * 15 14 13 17 17 C 1.38811 * 120.00383 * 209.67366 * 15 14 13 18 18 N 1.31616 * 120.00125 * 199.00457 * 17 15 14 19 19 Si 1.86800 * 119.99707 * 19.01056 * 17 15 14 20 20 H 1.48492 * 109.47131 * 273.02549 * 19 17 15 21 21 H 1.48503 * 109.47083 * 33.02468 * 19 17 15 22 22 H 1.48501 * 109.47072 * 153.02248 * 19 17 15 23 23 C 1.46925 * 118.73361 * 53.85911 * 14 13 12 24 24 C 1.53045 * 109.45119 * 275.06334 * 11 10 8 25 25 H 1.09001 * 109.47085 * 274.30969 * 1 2 3 26 26 H 1.08999 * 109.47253 * 34.30870 * 1 2 3 27 27 H 1.08999 * 109.46980 * 154.31328 * 1 2 3 28 28 H 1.08998 * 109.47364 * 205.68943 * 3 2 1 29 29 H 1.09002 * 109.46995 * 325.69430 * 3 2 1 30 30 H 1.09004 * 109.47180 * 85.68578 * 3 2 1 31 31 H 1.09007 * 117.50049 * 145.01667 * 4 2 1 32 32 H 1.09002 * 117.51581 * 359.97438 * 4 2 1 33 33 H 0.97000 * 119.99863 * 316.39942 * 7 5 4 34 34 H 0.96992 * 120.00155 * 0.02562 * 10 8 7 35 35 H 1.09004 * 109.46361 * 35.02946 * 11 10 8 36 36 H 1.09008 * 109.49468 * 61.42214 * 12 11 10 37 37 H 1.08996 * 109.52588 * 301.34282 * 12 11 10 38 38 H 1.09000 * 109.58716 * 185.58118 * 13 12 11 39 39 H 1.08997 * 109.58691 * 65.15470 * 13 12 11 40 40 H 0.97004 * 120.00205 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.58874 * 65.92938 * 23 14 13 42 42 H 1.09006 * 109.58680 * 186.35059 * 23 14 13 43 43 H 1.09002 * 109.49308 * 298.57425 * 24 11 10 44 44 H 1.09003 * 109.49274 * 58.63940 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2364 -1.1210 -0.7649 5 6 2.2365 -1.1210 0.7650 6 1 3.1716 -0.8755 1.2683 7 7 1.3961 -2.1122 1.4415 8 6 1.8760 -2.7911 2.5022 9 8 3.0063 -2.5806 2.8980 10 7 1.1027 -3.7026 3.1249 11 6 1.6242 -4.4402 4.2782 12 6 0.4594 -4.9042 5.1558 13 6 1.0099 -5.6452 6.3782 14 7 1.8880 -6.7297 5.9181 15 6 1.6868 -8.0168 6.3397 16 1 0.6915 -8.3539 6.5892 17 6 2.7619 -8.8883 6.4465 18 7 2.5549 -10.1877 6.4808 19 14 4.5025 -8.2170 6.5415 20 1 5.0336 -8.0222 5.1686 21 1 4.4929 -6.9161 7.2577 22 1 5.3647 -9.1789 7.2740 23 6 2.9899 -6.4057 5.0018 24 6 2.4138 -5.6570 3.7904 25 1 -0.3633 0.0772 1.0248 26 1 -0.3634 0.8489 -0.5792 27 1 -0.3633 -0.9261 -0.4454 28 1 3.1824 1.3084 -0.4455 29 1 1.5812 2.0743 -0.5792 30 1 2.2773 1.7414 1.0248 31 1 3.1716 -0.8752 -1.2683 32 1 1.6115 -1.8589 -1.2679 33 1 0.4944 -2.2799 1.1258 34 1 0.2010 -3.8702 2.8094 35 1 2.2797 -3.7907 4.8585 36 1 -0.1831 -5.5735 4.5835 37 1 -0.1168 -4.0390 5.4837 38 1 0.1844 -6.0631 6.9545 39 1 1.5785 -4.9533 6.9995 40 1 3.3062 -10.7967 6.5550 41 1 3.7167 -5.7744 5.5131 42 1 3.4713 -7.3255 4.6696 43 1 1.7529 -6.3191 3.2310 44 1 3.2289 -5.3273 3.1461 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591155702.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:27:55 Heat of formation + Delta-G solvation = 11.333890 kcal Electronic energy + Delta-G solvation = -22467.288806 eV Core-core repulsion = 19227.831733 eV Total energy + Delta-G solvation = -3239.457073 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.26897 -38.71274 -37.46235 -34.48990 -33.46715 -31.99476 -30.34584 -30.03343 -29.00499 -27.85018 -25.00230 -22.85549 -22.72871 -21.65355 -20.67669 -19.75296 -19.50358 -18.13710 -16.85956 -16.51896 -15.54291 -15.07715 -14.86795 -14.75563 -14.17287 -14.11373 -13.92989 -13.71219 -13.35190 -13.18044 -12.87006 -12.84942 -12.59938 -12.30615 -12.05978 -11.94790 -11.75452 -11.55647 -11.30857 -10.99180 -10.79769 -10.57246 -10.21700 -10.09722 -10.07790 -10.00054 -9.74116 -9.49458 -8.96955 -8.64194 -8.50721 -6.94555 -5.93336 -3.31664 2.62510 3.11198 3.36868 3.52191 3.56401 3.63422 4.15964 4.35885 4.52821 4.56059 4.60270 4.71527 4.99399 5.18301 5.27195 5.27941 5.33610 5.45649 5.47422 5.52965 5.54664 5.56977 5.67566 5.71175 5.78320 5.86391 5.94313 6.06557 6.14358 6.18138 6.34259 6.40948 6.47745 6.59244 6.67863 6.72224 6.79630 6.89335 7.05125 7.99582 8.05539 8.34916 8.67213 8.95743 9.73651 10.12144 11.22651 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.035977 B = 0.003373 C = 0.003241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 778.082385 B = 8299.437558 C = 8637.451677 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.143 4.143 3 C -0.114 4.114 4 C -0.189 4.189 5 C 0.113 3.887 6 H 0.137 0.863 7 N -0.721 5.721 8 C 0.705 3.295 9 O -0.588 6.588 10 N -0.739 5.739 11 C 0.169 3.831 12 C -0.140 4.140 13 C 0.152 3.848 14 N -0.607 5.607 15 C -0.261 4.261 16 H 0.085 0.915 17 C 0.024 3.976 18 N -0.910 5.910 19 Si 0.885 3.115 20 H -0.285 1.285 21 H -0.272 1.272 22 H -0.303 1.303 23 C 0.127 3.873 24 C -0.141 4.141 25 H 0.061 0.939 26 H 0.062 0.938 27 H 0.056 0.944 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.061 0.939 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.395 0.605 34 H 0.392 0.608 35 H 0.083 0.917 36 H 0.067 0.933 37 H 0.059 0.941 38 H 0.068 0.932 39 H 0.025 0.975 40 H 0.263 0.737 41 H 0.027 0.973 42 H 0.077 0.923 43 H 0.064 0.936 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.619 20.739 -13.728 25.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.144 4.144 3 C -0.171 4.171 4 C -0.228 4.228 5 C 0.006 3.994 6 H 0.155 0.845 7 N -0.374 5.374 8 C 0.406 3.594 9 O -0.466 6.466 10 N -0.392 5.392 11 C 0.065 3.935 12 C -0.180 4.180 13 C 0.025 3.975 14 N -0.331 5.331 15 C -0.389 4.389 16 H 0.103 0.897 17 C -0.175 4.175 18 N -0.553 5.553 19 Si 0.715 3.285 20 H -0.213 1.213 21 H -0.197 1.197 22 H -0.232 1.232 23 C 0.001 3.999 24 C -0.181 4.181 25 H 0.080 0.920 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.080 0.920 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.229 0.771 34 H 0.225 0.775 35 H 0.101 0.899 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.043 0.957 40 H 0.073 0.927 41 H 0.045 0.955 42 H 0.095 0.905 43 H 0.082 0.918 44 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -4.506 20.716 -13.262 25.007 hybrid contribution 0.148 0.034 -0.458 0.482 sum -4.357 20.751 -13.720 25.255 Atomic orbital electron populations 1.21310 0.92025 1.02003 1.02063 1.22081 0.95304 0.92017 1.05036 1.21345 1.00025 0.93609 1.02150 1.23783 1.02785 1.00822 0.95397 1.21550 0.96360 0.91018 0.90453 0.84521 1.44485 1.17545 1.42604 1.32753 1.15941 0.84707 0.79128 0.79668 1.90921 1.18240 1.69847 1.67562 1.45451 1.17261 1.42025 1.34450 1.20869 0.95715 0.92217 0.84745 1.22339 0.97011 0.99819 0.98825 1.20872 0.94159 0.89877 0.92609 1.44415 1.33074 1.04817 1.50792 1.18901 0.94492 0.84629 1.40917 0.89739 1.25330 0.97866 0.95156 0.99106 1.69817 1.31249 1.01269 1.52953 0.86973 0.85769 0.78354 0.77401 1.21295 1.19667 1.23158 1.21463 0.90695 0.98287 0.89477 1.22475 0.99695 0.96466 0.99470 0.91989 0.91859 0.92543 0.92200 0.92021 0.91999 0.88099 0.88623 0.77123 0.77518 0.89927 0.91442 0.92186 0.91356 0.95692 0.92743 0.95550 0.90528 0.91756 0.92379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.74 8.85 37.16 0.33 -0.41 16 2 C -0.14 -1.08 2.70 -154.51 -0.42 -1.50 16 3 C -0.11 -0.76 9.85 37.16 0.37 -0.39 16 4 C -0.19 -1.52 9.75 -26.74 -0.26 -1.78 16 5 C 0.11 1.15 6.13 -67.93 -0.42 0.74 16 6 H 0.14 1.66 7.40 -51.93 -0.38 1.27 16 7 N -0.72 -7.70 5.35 -58.68 -0.31 -8.02 16 8 C 0.71 10.36 8.53 -86.92 -0.74 9.62 16 9 O -0.59 -11.23 15.57 5.29 0.08 -11.14 16 10 N -0.74 -9.88 5.08 -58.63 -0.30 -10.18 16 11 C 0.17 2.78 2.41 -67.89 -0.16 2.62 16 12 C -0.14 -2.18 5.55 -26.62 -0.15 -2.32 16 13 C 0.15 2.92 6.51 -3.71 -0.02 2.90 16 14 N -0.61 -14.48 2.74 -172.06 -0.47 -14.95 16 15 C -0.26 -7.31 10.03 -15.06 -0.15 -7.46 16 16 H 0.09 2.50 8.06 -52.48 -0.42 2.08 16 17 C 0.02 0.71 5.24 -17.43 -0.09 0.62 16 18 N -0.91 -28.08 13.97 55.49 0.78 -27.31 16 19 Si 0.88 22.96 24.35 -169.99 -4.14 18.83 16 20 H -0.29 -7.18 6.39 56.52 0.36 -6.81 16 21 H -0.27 -7.00 6.93 56.52 0.39 -6.61 16 22 H -0.30 -7.97 7.11 56.52 0.40 -7.56 16 23 C 0.13 2.88 4.22 -3.49 -0.01 2.87 16 24 C -0.14 -2.68 5.67 -26.39 -0.15 -2.83 16 25 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 26 H 0.06 0.35 7.92 -51.93 -0.41 -0.06 16 27 H 0.06 0.32 7.61 -51.93 -0.40 -0.08 16 28 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 29 H 0.06 0.35 7.92 -51.93 -0.41 -0.07 16 30 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.10 0.74 8.05 -51.92 -0.42 0.33 16 32 H 0.10 0.73 8.05 -51.93 -0.42 0.31 16 33 H 0.39 3.13 7.71 -40.82 -0.31 2.82 16 34 H 0.39 4.02 8.62 -40.82 -0.35 3.67 16 35 H 0.08 1.53 7.58 -51.93 -0.39 1.13 16 36 H 0.07 1.05 8.14 -51.92 -0.42 0.63 16 37 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.07 1.29 7.93 -51.93 -0.41 0.88 16 39 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 40 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 41 H 0.03 0.61 7.21 -51.93 -0.37 0.24 16 42 H 0.08 1.90 4.51 -51.93 -0.23 1.67 16 43 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 44 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 344.70 15.07 5.19 5.19 Total: -1.00 -33.28 344.70 -8.55 -41.83 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: -7.50 Total: 3.08 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: -1.88 Total: 2.67 kcal Atomic # 7 Polarization: -60.15 SS G_CDS: -0.31 Total: -60.45 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.14 Total: 18.83 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -33.28 -8.55 -41.83 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591155702.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.160 kcal (2) G-P(sol) polarization free energy of solvation -33.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.826 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.334 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds