Wall clock time and date at job start Tue Mar 31 2020 05:24:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86803 * 119.99867 * 2 1 4 4 H 1.48502 * 109.47209 * 270.00382 * 3 2 1 5 5 H 1.48501 * 109.47169 * 30.00322 * 3 2 1 6 6 H 1.48499 * 109.47211 * 150.00422 * 3 2 1 7 7 C 1.37874 * 120.00253 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00299 * 173.55228 * 7 2 1 9 9 C 1.50701 * 119.99795 * 353.55422 * 7 2 1 10 10 C 1.52989 * 115.55117 * 85.40269 * 9 7 2 11 11 N 1.46510 * 109.47181 * 65.14383 * 10 9 7 12 12 C 1.34775 * 119.99908 * 178.28698 * 11 10 9 13 13 O 1.21589 * 120.00408 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99987 * 180.27551 * 12 11 10 15 15 C 1.46493 * 120.00122 * 179.72514 * 14 12 11 16 16 C 1.53001 * 109.47117 * 179.97438 * 15 14 12 17 17 H 1.09002 * 109.45887 * 65.02034 * 16 15 14 18 18 C 1.53037 * 109.46657 * 184.99959 * 16 15 14 19 19 C 1.53111 * 109.28015 * 179.19928 * 18 16 15 20 20 C 1.53121 * 109.16076 * 302.34339 * 19 18 16 21 21 C 1.53040 * 109.27565 * 57.65510 * 20 19 18 22 22 N 1.46841 * 109.52515 * 300.81920 * 21 20 19 23 23 C 1.53002 * 117.49433 * 231.07695 * 9 7 2 24 24 C 1.53001 * 117.49717 * 299.73020 * 9 7 2 25 25 H 0.97000 * 120.00393 * 5.06321 * 1 2 3 26 26 H 1.08996 * 109.47917 * 305.14041 * 10 9 7 27 27 H 1.09005 * 109.47267 * 185.13588 * 10 9 7 28 28 H 0.96998 * 119.99783 * 358.28233 * 11 10 9 29 29 H 0.96998 * 119.99645 * 359.71986 * 14 12 11 30 30 H 1.08999 * 109.47225 * 299.99893 * 15 14 12 31 31 H 1.08999 * 109.47153 * 59.99781 * 15 14 12 32 32 H 1.08999 * 109.50203 * 299.14185 * 18 16 15 33 33 H 1.09004 * 109.50212 * 59.25358 * 18 16 15 34 34 H 1.08991 * 109.52511 * 62.25004 * 19 18 16 35 35 H 1.09002 * 109.52560 * 182.37985 * 19 18 16 36 36 H 1.08995 * 109.50537 * 177.60116 * 20 19 18 37 37 H 1.09008 * 109.50559 * 297.71534 * 20 19 18 38 38 H 1.08996 * 109.46128 * 60.84107 * 21 20 19 39 39 H 1.09000 * 109.45972 * 180.80692 * 21 20 19 40 40 H 1.00902 * 111.00627 * 297.64856 * 22 21 20 41 41 H 1.08999 * 117.49575 * 215.00081 * 23 9 7 42 42 H 1.08994 * 117.50150 * 0.02562 * 23 9 7 43 43 H 1.09006 * 117.49625 * 359.97438 * 24 9 7 44 44 H 1.08995 * 117.49786 * 144.99899 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4965 2.0465 -1.4001 5 1 1.4466 2.6527 0.7001 6 1 3.5467 1.4402 0.6999 7 6 2.0046 -1.1940 -0.0005 8 1 3.0794 -1.1969 -0.1056 9 6 1.2582 -2.4951 0.1454 10 6 0.7021 -3.0859 -1.1516 11 7 1.8112 -3.4583 -2.0335 12 6 1.5599 -4.0344 -3.2257 13 8 0.4129 -4.2456 -3.5692 14 7 2.5804 -4.3821 -4.0346 15 6 2.3075 -5.0138 -5.3279 16 6 3.6288 -5.3036 -6.0428 17 1 4.1945 -6.0423 -5.4750 18 6 3.3417 -5.8481 -7.4440 19 6 4.6665 -6.1178 -8.1627 20 6 5.4818 -4.8228 -8.2165 21 6 5.7068 -4.3080 -6.7930 22 7 4.4101 -4.0647 -6.1484 23 6 1.7472 -3.4737 1.2150 24 6 0.4419 -2.7017 1.4228 25 1 -0.4851 0.8367 -0.0741 26 1 0.0754 -2.3456 -1.6488 27 1 0.1076 -3.9703 -0.9225 28 1 2.7263 -3.2900 -1.7594 29 1 3.4955 -4.2138 -3.7605 30 1 1.7673 -5.9472 -5.1695 31 1 1.7033 -4.3436 -5.9393 32 1 2.7752 -6.7760 -7.3648 33 1 2.7642 -5.1155 -8.0078 34 1 5.2270 -6.8788 -7.6200 35 1 4.4668 -6.4659 -9.1762 36 1 6.4442 -5.0180 -8.6893 37 1 4.9380 -4.0740 -8.7926 38 1 6.2627 -5.0513 -6.2216 39 1 6.2748 -3.3783 -6.8285 40 1 3.8913 -3.3507 -6.6375 41 1 1.6727 -4.5386 0.9946 42 1 2.6083 -3.1764 1.8133 43 1 0.4451 -1.8968 2.1579 44 1 -0.4913 -3.2586 1.3392 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591357511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:05 Heat of formation + Delta-G solvation = -22.720259 kcal Electronic energy + Delta-G solvation = -22214.977227 eV Core-core repulsion = 18974.043455 eV Total energy + Delta-G solvation = -3240.933772 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.66516 -38.78651 -36.68963 -34.46455 -33.11837 -31.94027 -31.91351 -31.25107 -26.91756 -25.65979 -24.69708 -23.53239 -21.69207 -21.13619 -20.77293 -19.97512 -19.28830 -17.59663 -16.39834 -15.76604 -15.70580 -15.28483 -14.98703 -14.72312 -14.51671 -14.35957 -13.96599 -13.73256 -13.30851 -13.02314 -12.70715 -12.59770 -12.30866 -12.14850 -11.64393 -11.55697 -11.50573 -11.33402 -10.95774 -10.94306 -10.87322 -10.71481 -10.48286 -10.21536 -9.64728 -9.43594 -8.90277 -8.68101 -8.56847 -8.43927 -8.18191 -7.84470 -6.02298 -4.10478 3.29579 3.34828 3.37097 3.39168 3.92773 4.01359 4.39631 4.42142 4.51468 4.64801 4.76921 4.96882 5.04616 5.10096 5.16931 5.25976 5.38164 5.45124 5.48704 5.57390 5.63946 5.69839 5.76561 5.79148 5.90734 6.02780 6.10375 6.40818 6.54099 6.67491 6.75370 6.76347 6.94729 6.97786 7.14631 7.17188 7.43737 7.51828 7.55173 7.76195 7.86920 8.40376 8.82224 8.90470 9.35615 9.55873 11.05565 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.020091 B = 0.003647 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.322014 B = 7675.113656 C = 8455.665443 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.875 5.875 2 C 0.074 3.926 3 Si 0.890 3.110 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.183 3.817 11 N -0.721 5.721 12 C 0.696 3.304 13 O -0.610 6.610 14 N -0.744 5.744 15 C 0.150 3.850 16 C 0.076 3.924 17 H 0.086 0.914 18 C -0.151 4.151 19 C -0.118 4.118 20 C -0.160 4.160 21 C 0.058 3.942 22 N -0.679 5.679 23 C -0.211 4.211 24 C -0.148 4.148 25 H 0.261 0.739 26 H 0.068 0.932 27 H 0.033 0.967 28 H 0.396 0.604 29 H 0.401 0.599 30 H 0.065 0.935 31 H 0.059 0.941 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.061 0.939 38 H 0.072 0.928 39 H 0.076 0.924 40 H 0.344 0.656 41 H 0.065 0.935 42 H 0.077 0.923 43 H 0.083 0.917 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.552 -10.522 -13.764 20.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.511 5.511 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.199 1.199 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.373 5.373 12 C 0.396 3.604 13 O -0.491 6.491 14 N -0.401 5.401 15 C 0.025 3.975 16 C -0.035 4.035 17 H 0.105 0.895 18 C -0.190 4.190 19 C -0.156 4.156 20 C -0.199 4.199 21 C -0.072 4.072 22 N -0.308 5.308 23 C -0.248 4.248 24 C -0.186 4.186 25 H 0.071 0.929 26 H 0.087 0.913 27 H 0.051 0.949 28 H 0.229 0.771 29 H 0.235 0.765 30 H 0.084 0.916 31 H 0.077 0.923 32 H 0.090 0.910 33 H 0.085 0.915 34 H 0.082 0.918 35 H 0.080 0.920 36 H 0.084 0.916 37 H 0.080 0.920 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.163 0.837 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.101 0.899 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 9.548 -10.607 -13.323 19.524 hybrid contribution 0.939 1.001 -0.816 1.597 sum 10.487 -9.606 -14.139 20.054 Atomic orbital electron populations 1.69978 1.05878 1.26840 1.48376 1.24979 0.94784 0.98898 0.94363 0.86638 0.79910 0.83620 0.78111 1.20699 1.21233 1.19852 1.20334 0.92806 0.88633 1.51848 0.92241 1.19037 0.98496 0.93856 0.85783 1.20814 0.86707 0.96536 0.90016 1.45112 1.11199 1.63798 1.17183 1.16074 0.84599 0.78877 0.80839 1.90856 1.20096 1.62297 1.75804 1.44894 1.08780 1.67201 1.19203 1.21049 0.94843 0.97762 0.83894 1.21854 0.94315 0.92379 0.94907 0.89539 1.22201 0.97760 1.02262 0.96816 1.21533 0.96009 0.97544 1.00480 1.22283 1.00564 0.97926 0.99120 1.22015 0.91856 1.01344 0.91994 1.60604 1.05149 1.08869 1.56189 1.23014 0.98597 0.95695 1.07505 1.22488 0.92284 1.01076 1.02799 0.92907 0.91340 0.94881 0.77099 0.76478 0.91650 0.92252 0.90990 0.91549 0.91837 0.91973 0.91575 0.91993 0.90917 0.90585 0.83728 0.91667 0.90436 0.89864 0.91683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.65 12.91 55.43 0.72 -23.93 16 2 C 0.07 1.98 5.39 -17.82 -0.10 1.89 16 3 Si 0.89 20.81 29.55 -169.99 -5.02 15.79 16 4 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 5 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 6 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 7 C -0.50 -13.02 8.63 -34.44 -0.30 -13.32 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.03 0.70 1.38 -155.66 -0.21 0.48 16 10 C 0.18 4.32 5.50 -4.04 -0.02 4.30 16 11 N -0.72 -14.69 5.48 -65.22 -0.36 -15.04 16 12 C 0.70 13.91 8.57 -86.92 -0.74 13.16 16 13 O -0.61 -14.58 16.34 5.29 0.09 -14.49 16 14 N -0.74 -11.08 5.39 -65.23 -0.35 -11.43 16 15 C 0.15 1.88 5.32 -4.04 -0.02 1.85 16 16 C 0.08 0.69 2.58 -67.72 -0.17 0.52 16 17 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 18 C -0.15 -1.17 5.36 -26.65 -0.14 -1.31 16 19 C -0.12 -0.80 6.00 -26.61 -0.16 -0.96 16 20 C -0.16 -1.07 6.08 -26.65 -0.16 -1.23 16 21 C 0.06 0.44 6.55 -3.84 -0.03 0.41 16 22 N -0.68 -6.24 5.94 -106.76 -0.63 -6.87 16 23 C -0.21 -4.46 9.96 -26.70 -0.27 -4.73 16 24 C -0.15 -3.45 9.42 -26.70 -0.25 -3.70 16 25 H 0.26 7.08 8.32 -40.82 -0.34 6.74 16 26 H 0.07 1.86 8.14 -51.93 -0.42 1.44 16 27 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 28 H 0.40 7.39 8.38 -40.82 -0.34 7.04 16 29 H 0.40 5.29 8.15 -40.82 -0.33 4.96 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 35 H 0.06 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 37 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.34 3.26 8.79 -39.29 -0.35 2.91 16 41 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 42 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 43 H 0.08 2.05 8.14 -51.93 -0.42 1.62 16 44 H 0.06 1.44 8.14 -51.93 -0.42 1.02 16 LS Contribution 357.49 15.07 5.39 5.39 Total: -1.00 -30.27 357.49 -10.50 -40.77 By element: Atomic # 1 Polarization: 20.20 SS G_CDS: -7.75 Total: 12.45 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -2.58 Total: -2.63 kcal Atomic # 7 Polarization: -56.65 SS G_CDS: -0.63 Total: -57.28 kcal Atomic # 8 Polarization: -14.58 SS G_CDS: 0.09 Total: -14.49 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -5.02 Total: 15.79 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -30.27 -10.50 -40.77 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591357511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.053 kcal (2) G-P(sol) polarization free energy of solvation -30.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.773 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds