Wall clock time and date at job start Tue Mar 31 2020 05:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86805 * 119.99920 * 2 1 4 4 H 1.48504 * 109.46919 * 269.99879 * 3 2 1 5 5 H 1.48493 * 109.47105 * 29.99960 * 3 2 1 6 6 H 1.48501 * 109.47091 * 149.99962 * 3 2 1 7 7 C 1.37874 * 120.00102 * 179.97438 * 2 1 3 8 8 H 1.08008 * 120.00324 * 171.90906 * 7 2 1 9 9 C 1.50699 * 119.99811 * 351.91454 * 7 2 1 10 10 C 1.53004 * 115.54994 * 84.81589 * 9 7 2 11 11 N 1.46499 * 109.47259 * 40.07474 * 10 9 7 12 12 C 1.34776 * 119.99873 * 186.14793 * 11 10 9 13 13 O 1.21585 * 120.00109 * 0.02562 * 12 11 10 14 14 N 1.34774 * 119.99739 * 179.97438 * 12 11 10 15 15 C 1.46502 * 120.00214 * 180.02562 * 14 12 11 16 16 C 1.52992 * 109.47565 * 180.02562 * 15 14 12 17 17 H 1.08993 * 109.46675 * 295.00749 * 16 15 14 18 18 C 1.53039 * 109.46448 * 175.02054 * 16 15 14 19 19 C 1.53113 * 109.27970 * 180.79482 * 18 16 15 20 20 C 1.53122 * 109.15322 * 57.67406 * 19 18 16 21 21 C 1.53041 * 109.27533 * 302.34013 * 20 19 18 22 22 N 1.46840 * 109.52325 * 59.17942 * 21 20 19 23 23 C 1.53001 * 117.51582 * 230.51400 * 9 7 2 24 24 C 1.52995 * 60.00218 * 107.48335 * 23 9 7 25 25 H 0.97003 * 119.99948 * 5.02560 * 1 2 3 26 26 H 1.09006 * 109.47092 * 160.07533 * 10 9 7 27 27 H 1.08999 * 109.46781 * 280.07120 * 10 9 7 28 28 H 0.96999 * 119.99913 * 6.14864 * 11 10 9 29 29 H 0.97006 * 120.00555 * 0.02562 * 14 12 11 30 30 H 1.09001 * 109.47031 * 300.00933 * 15 14 12 31 31 H 1.08998 * 109.46654 * 60.00292 * 15 14 12 32 32 H 1.08996 * 109.50372 * 300.74759 * 18 16 15 33 33 H 1.09004 * 109.49741 * 60.86551 * 18 16 15 34 34 H 1.08996 * 109.53466 * 297.77167 * 19 18 16 35 35 H 1.09004 * 109.57638 * 177.60308 * 19 18 16 36 36 H 1.09001 * 109.50588 * 182.39655 * 20 19 18 37 37 H 1.08997 * 109.53260 * 62.29532 * 20 19 18 38 38 H 1.09000 * 109.46283 * 299.16042 * 21 20 19 39 39 H 1.09007 * 109.45674 * 179.19275 * 21 20 19 40 40 H 1.00901 * 110.99913 * 174.16063 * 22 21 20 41 41 H 1.09004 * 117.49903 * 214.97329 * 23 9 7 42 42 H 1.09004 * 117.50048 * 359.97438 * 23 9 7 43 43 H 1.08997 * 117.49679 * 252.51269 * 24 23 9 44 44 H 1.08997 * 117.50449 * 107.48651 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0766 -1.1988 -0.1311 9 6 1.2623 -2.4925 0.1847 10 6 0.6623 -3.0957 -1.0870 11 7 1.6030 -2.9288 -2.1976 12 6 1.2373 -3.2739 -3.4481 13 8 0.1266 -3.7233 -3.6545 14 7 2.1026 -3.1198 -4.4698 15 6 1.7050 -3.4943 -5.8292 16 6 2.8621 -3.2220 -6.7924 17 1 3.0559 -2.1502 -6.8335 18 6 2.4929 -3.7274 -8.1889 19 6 3.6613 -3.4708 -9.1447 20 6 4.9138 -4.1673 -8.6054 21 6 5.2129 -3.6493 -7.1967 22 7 4.0656 -3.9190 -6.3208 23 6 1.7852 -3.4611 1.2474 24 6 0.4892 -2.6853 1.4909 25 1 -0.4850 0.8368 -0.0736 26 1 0.4702 -4.1572 -0.9300 27 1 -0.2729 -2.5883 -1.3235 28 1 2.4890 -2.5699 -2.0329 29 1 2.9887 -2.7609 -4.3053 30 1 1.4531 -4.5545 -5.8550 31 1 0.8369 -2.9072 -6.1286 32 1 2.2858 -4.7967 -8.1460 33 1 1.6087 -3.1989 -8.5451 34 1 3.8437 -2.3987 -9.2177 35 1 3.4201 -3.8673 -10.1310 36 1 5.7593 -3.9530 -9.2592 37 1 4.7453 -5.2435 -8.5693 38 1 5.3956 -2.5754 -7.2358 39 1 6.0960 -4.1538 -6.8043 40 1 4.2748 -3.6729 -5.3649 41 1 1.7018 -4.5281 1.0406 42 1 2.6666 -3.1594 1.8133 43 1 0.5178 -1.8730 2.2171 44 1 -0.4469 -3.2417 1.4443 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591357512.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:24:07 Heat of formation + Delta-G solvation = -18.602863 kcal Electronic energy + Delta-G solvation = -22342.130196 eV Core-core repulsion = 19101.374967 eV Total energy + Delta-G solvation = -3240.755228 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.62518 -38.62667 -36.71484 -34.51220 -33.12552 -32.14394 -32.00608 -31.19836 -26.90596 -25.66911 -24.84207 -23.56445 -21.70813 -21.14454 -20.22487 -19.84598 -19.36884 -17.76646 -16.60903 -16.15796 -15.58138 -15.43771 -14.73764 -14.54115 -14.51292 -14.13297 -13.92019 -13.79470 -13.37818 -13.04445 -12.84136 -12.67834 -12.48816 -12.09604 -11.74027 -11.59271 -11.29696 -11.04268 -11.02634 -10.91879 -10.66296 -10.60682 -10.54312 -10.22371 -9.69744 -9.45054 -8.92827 -8.73903 -8.63729 -8.49974 -8.26567 -7.78526 -6.09379 -4.18096 3.21736 3.30313 3.31139 3.32956 3.86611 4.00235 4.32220 4.54864 4.60209 4.70482 4.90150 5.02369 5.06406 5.17298 5.20769 5.30522 5.36183 5.46011 5.49488 5.64639 5.71540 5.78328 5.88623 5.90652 6.03624 6.08223 6.17571 6.34706 6.51737 6.61251 6.74542 6.79170 6.88816 6.93155 7.10772 7.16626 7.38029 7.43295 7.49372 7.68935 7.78922 8.34276 8.79887 8.83832 9.34895 9.48562 10.98282 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.019455 B = 0.003819 C = 0.003535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.841203 B = 7329.608233 C = 7918.496362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.869 5.869 2 C 0.077 3.923 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.503 4.503 8 H 0.059 0.941 9 C 0.029 3.971 10 C 0.183 3.817 11 N -0.712 5.712 12 C 0.699 3.301 13 O -0.607 6.607 14 N -0.753 5.753 15 C 0.148 3.852 16 C 0.077 3.923 17 H 0.044 0.956 18 C -0.110 4.110 19 C -0.121 4.121 20 C -0.118 4.118 21 C 0.057 3.943 22 N -0.683 5.683 23 C -0.211 4.211 24 C -0.153 4.153 25 H 0.261 0.739 26 H 0.031 0.969 27 H 0.067 0.933 28 H 0.398 0.602 29 H 0.388 0.612 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.075 0.925 33 H 0.069 0.931 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.029 0.971 39 H 0.074 0.926 40 H 0.343 0.657 41 H 0.066 0.934 42 H 0.077 0.923 43 H 0.082 0.918 44 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.140 -5.493 -14.454 17.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.504 5.504 2 C -0.127 4.127 3 Si 0.715 3.285 4 H -0.208 1.208 5 H -0.211 1.211 6 H -0.198 1.198 7 C -0.541 4.541 8 H 0.077 0.923 9 C 0.028 3.972 10 C 0.059 3.941 11 N -0.365 5.365 12 C 0.399 3.601 13 O -0.487 6.487 14 N -0.411 5.411 15 C 0.023 3.977 16 C -0.033 4.033 17 H 0.062 0.938 18 C -0.149 4.149 19 C -0.158 4.158 20 C -0.156 4.156 21 C -0.072 4.072 22 N -0.317 5.317 23 C -0.248 4.248 24 C -0.191 4.191 25 H 0.071 0.929 26 H 0.049 0.951 27 H 0.085 0.915 28 H 0.233 0.767 29 H 0.221 0.779 30 H 0.089 0.911 31 H 0.085 0.915 32 H 0.093 0.907 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.089 0.911 38 H 0.047 0.953 39 H 0.093 0.907 40 H 0.163 0.837 41 H 0.084 0.916 42 H 0.095 0.905 43 H 0.100 0.900 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 7.752 -6.362 -14.845 17.915 hybrid contribution 1.433 2.330 0.458 2.773 sum 9.184 -4.032 -14.387 17.539 Atomic orbital electron populations 1.69982 1.05921 1.26867 1.47622 1.24974 0.94723 0.98826 0.94224 0.86676 0.80015 0.83735 0.78059 1.20796 1.21144 1.19800 1.20255 0.93003 0.88692 1.52124 0.92258 1.19044 0.98161 0.93985 0.85993 1.20710 0.91871 0.96431 0.85064 1.45051 1.19020 1.67169 1.05226 1.16001 0.84037 0.79235 0.80850 1.90854 1.20721 1.53049 1.84049 1.45016 1.17344 1.71667 1.07065 1.21155 0.95595 1.01141 0.79783 1.21750 0.90545 0.95923 0.95066 0.93825 1.21552 0.97938 1.02435 0.92930 1.21566 0.95245 1.00380 0.98641 1.21595 0.97553 1.01132 0.95313 1.21920 0.93196 0.98343 0.93746 1.60291 1.03628 1.61915 1.05863 1.23086 0.98203 0.95702 1.07845 1.22493 0.92710 1.01126 1.02732 0.92860 0.95070 0.91501 0.76697 0.77867 0.91133 0.91543 0.90674 0.91203 0.92316 0.91707 0.91816 0.91076 0.95267 0.90732 0.83720 0.91565 0.90460 0.89974 0.91644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -24.04 12.99 55.43 0.72 -23.32 16 2 C 0.08 2.02 5.38 -17.82 -0.10 1.93 16 3 Si 0.89 20.21 29.55 -169.99 -5.02 15.19 16 4 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 5 H -0.29 -6.60 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 7 C -0.50 -12.68 7.52 -34.44 -0.26 -12.94 16 8 H 0.06 1.46 7.83 -52.48 -0.41 1.04 16 9 C 0.03 0.68 1.69 -155.66 -0.26 0.42 16 10 C 0.18 4.25 5.76 -4.04 -0.02 4.23 16 11 N -0.71 -14.68 5.28 -65.22 -0.34 -15.03 16 12 C 0.70 14.18 8.57 -86.92 -0.74 13.44 16 13 O -0.61 -14.66 16.33 5.29 0.09 -14.57 16 14 N -0.75 -11.44 5.26 -65.23 -0.34 -11.79 16 15 C 0.15 1.99 5.37 -4.04 -0.02 1.97 16 16 C 0.08 0.81 2.68 -67.72 -0.18 0.62 16 17 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 18 C -0.11 -1.00 5.37 -26.65 -0.14 -1.14 16 19 C -0.12 -0.95 6.00 -26.61 -0.16 -1.10 16 20 C -0.12 -0.92 6.09 -26.65 -0.16 -1.08 16 21 C 0.06 0.49 6.55 -3.84 -0.03 0.46 16 22 N -0.68 -6.86 6.50 -106.76 -0.69 -7.55 16 23 C -0.21 -4.43 9.88 -26.73 -0.26 -4.69 16 24 C -0.15 -3.49 9.53 -26.73 -0.25 -3.75 16 25 H 0.26 7.00 8.32 -40.82 -0.34 6.66 16 26 H 0.03 0.70 7.95 -51.93 -0.41 0.29 16 27 H 0.07 1.78 8.12 -51.93 -0.42 1.35 16 28 H 0.40 7.61 7.61 -40.82 -0.31 7.30 16 29 H 0.39 4.90 7.12 -40.82 -0.29 4.60 16 30 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 32 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 36 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 37 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.03 0.25 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 40 H 0.34 3.37 7.07 -39.29 -0.28 3.10 16 41 H 0.07 1.27 8.09 -51.93 -0.42 0.85 16 42 H 0.08 1.59 8.14 -51.93 -0.42 1.16 16 43 H 0.08 1.99 8.14 -51.93 -0.42 1.57 16 44 H 0.07 1.43 8.14 -51.93 -0.42 1.01 16 LS Contribution 353.69 15.07 5.33 5.33 Total: -1.00 -30.04 353.69 -10.46 -40.51 By element: Atomic # 1 Polarization: 20.46 SS G_CDS: -7.60 Total: 12.86 kcal Atomic # 6 Polarization: 0.96 SS G_CDS: -2.60 Total: -1.64 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.66 Total: -57.68 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: 0.09 Total: -14.57 kcal Atomic # 14 Polarization: 20.21 SS G_CDS: -5.02 Total: 15.19 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.04 -10.46 -40.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591357512.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.903 kcal (2) G-P(sol) polarization free energy of solvation -30.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.506 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.603 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds