Wall clock time and date at job start Tue Mar 31 2020 05:23:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86795 * 120.00149 * 2 1 4 4 H 1.48501 * 109.47367 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.47393 * 299.99848 * 3 2 1 6 6 H 1.48504 * 109.47325 * 60.00138 * 3 2 1 7 7 C 1.37878 * 119.99721 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00096 * 179.97438 * 7 2 1 9 9 C 1.50694 * 120.00116 * 0.02562 * 7 2 1 10 10 N 1.46903 * 109.47266 * 175.16358 * 9 7 2 11 11 C 1.46898 * 111.00342 * 295.41855 * 10 9 7 12 12 C 1.53235 * 109.34188 * 187.24991 * 11 10 9 13 13 N 1.47086 * 108.52240 * 306.17347 * 12 11 10 14 14 C 1.34778 * 120.88122 * 231.18547 * 13 12 11 15 15 O 1.21581 * 119.99810 * 38.48731 * 14 13 12 16 16 N 1.34780 * 119.99780 * 218.48486 * 14 13 12 17 17 C 1.46924 * 120.62553 * 183.08816 * 16 14 13 18 18 C 1.53193 * 108.89206 * 126.46714 * 17 16 14 19 19 C 1.53046 * 109.31196 * 54.55963 * 18 17 16 20 20 C 1.53041 * 109.53763 * 298.63663 * 19 18 17 21 21 C 1.46959 * 120.65305 * 2.90661 * 16 14 13 22 22 C 1.47085 * 118.23599 * 51.45394 * 13 12 11 23 23 C 1.46900 * 110.99436 * 59.72520 * 10 9 7 24 24 H 0.97006 * 119.99917 * 0.02562 * 1 2 3 25 25 H 1.09008 * 109.47205 * 55.16584 * 9 7 2 26 26 H 1.08995 * 109.47449 * 295.17062 * 9 7 2 27 27 H 1.09006 * 109.48710 * 67.29286 * 11 10 9 28 28 H 1.08992 * 109.49413 * 307.21914 * 11 10 9 29 29 H 1.08992 * 109.63138 * 186.46497 * 12 11 10 30 30 H 1.09001 * 109.78953 * 65.97587 * 12 11 10 31 31 H 1.08995 * 109.58980 * 6.60607 * 17 16 14 32 32 H 1.09005 * 109.58284 * 246.32030 * 17 16 14 33 33 H 1.08995 * 109.50186 * 174.51342 * 18 17 16 34 34 H 1.09004 * 109.49321 * 294.57806 * 18 17 16 35 35 H 1.08994 * 109.46076 * 58.65636 * 19 18 17 36 36 H 1.09003 * 109.45904 * 178.63037 * 19 18 17 37 37 H 1.08998 * 109.49741 * 181.31915 * 20 19 18 38 38 H 1.09004 * 109.49908 * 301.41204 * 20 19 18 39 39 H 1.09005 * 109.46576 * 113.74996 * 21 16 14 40 40 H 1.08992 * 109.71573 * 353.46829 * 21 16 14 41 41 H 1.09005 * 109.62622 * 68.25262 * 22 13 12 42 42 H 1.08994 * 109.62695 * 188.82747 * 22 13 12 43 43 H 1.08999 * 109.49285 * 292.69947 * 23 10 9 44 44 H 1.08993 * 109.49757 * 52.76046 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8905 2.3964 -1.2125 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4991 0.0005 10 7 2.2013 -3.6133 -0.1156 11 6 2.8988 -3.5779 -1.4080 12 6 3.7414 -4.8481 -1.5649 13 7 4.6161 -4.9768 -0.3894 14 6 5.9417 -5.1743 -0.5318 15 8 6.5497 -4.6034 -1.4165 16 7 6.5932 -6.0046 0.3065 17 6 8.0487 -6.1781 0.2067 18 6 8.6750 -5.9141 1.5796 19 6 8.0050 -6.8117 2.6226 20 6 6.5129 -6.4802 2.7004 21 6 5.8622 -6.7506 1.3403 22 6 4.0048 -4.8902 0.9456 23 6 3.1527 -3.6125 1.0037 24 1 -0.4850 0.8401 -0.0004 25 1 0.5612 -2.5205 -0.8433 26 1 0.6904 -2.5951 0.9304 27 1 3.5484 -2.7034 -1.4467 28 1 2.1677 -3.5243 -2.2145 29 1 4.3488 -4.7754 -2.4670 30 1 3.0883 -5.7182 -1.6323 31 1 8.4518 -5.4733 -0.5204 32 1 8.2744 -7.1970 -0.1080 33 1 9.7417 -6.1345 1.5414 34 1 8.5289 -4.8686 1.8511 35 1 8.1305 -7.8561 2.3373 36 1 8.4654 -6.6433 3.5962 37 1 6.0409 -7.1035 3.4599 38 1 6.3868 -5.4295 2.9616 39 1 5.9075 -7.8170 1.1191 40 1 4.8220 -6.4259 1.3618 41 1 3.3741 -5.7627 1.1168 42 1 4.7864 -4.8456 1.7039 43 1 3.7987 -2.7376 0.9313 44 1 2.6057 -3.5837 1.9460 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591553723.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:29 Heat of formation + Delta-G solvation = 1.102850 kcal Electronic energy + Delta-G solvation = -23495.147975 eV Core-core repulsion = 20255.247251 eV Total energy + Delta-G solvation = -3239.900724 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.63804 -38.08010 -37.10507 -34.59992 -32.89066 -32.19422 -31.39047 -30.33861 -28.11560 -25.89024 -24.58974 -23.76572 -22.89898 -22.18881 -21.12089 -19.87024 -19.04335 -17.23793 -16.37290 -16.23724 -15.56158 -15.02124 -14.74015 -14.51092 -14.37581 -14.25129 -14.10617 -13.93542 -13.61642 -13.27284 -13.05062 -12.58721 -12.44792 -11.98668 -11.81491 -11.43416 -11.21122 -11.09949 -11.04834 -11.02672 -10.76716 -10.70414 -10.66134 -10.42898 -10.17324 -9.96950 -9.75218 -9.53987 -8.69494 -8.44898 -8.15159 -7.21757 -6.04636 -4.13572 2.72908 3.11760 3.26276 3.34722 3.39906 3.84471 4.40529 4.56096 4.63825 4.67579 4.90028 4.92439 5.11670 5.20327 5.26887 5.27767 5.43174 5.48086 5.56580 5.58106 5.61455 5.66503 5.75432 5.76326 5.85634 5.88737 5.90606 6.02950 6.11993 6.17680 6.43716 6.49804 6.65411 6.82042 6.93074 7.14235 7.23697 7.50037 7.87219 7.97290 8.07394 8.21441 8.27318 8.67235 8.96926 9.53981 11.00444 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.023456 B = 0.004338 C = 0.004238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.418546 B = 6452.588027 C = 6605.989397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.066 3.934 3 Si 0.887 3.113 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.283 1.283 7 C -0.549 4.549 8 H 0.057 0.943 9 C 0.187 3.813 10 N -0.539 5.539 11 C 0.050 3.950 12 C 0.141 3.859 13 N -0.647 5.647 14 C 0.718 3.282 15 O -0.582 6.582 16 N -0.624 5.624 17 C 0.127 3.873 18 C -0.137 4.137 19 C -0.118 4.118 20 C -0.138 4.138 21 C 0.078 3.922 22 C 0.119 3.881 23 C 0.049 3.951 24 H 0.262 0.738 25 H 0.035 0.965 26 H 0.029 0.971 27 H 0.044 0.956 28 H 0.076 0.924 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.091 0.909 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.066 0.934 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.075 0.925 38 H 0.067 0.933 39 H 0.062 0.938 40 H 0.113 0.887 41 H 0.069 0.931 42 H 0.077 0.923 43 H 0.043 0.957 44 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.638 -15.927 4.937 20.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.137 4.137 3 Si 0.715 3.285 4 H -0.199 1.199 5 H -0.209 1.209 6 H -0.209 1.209 7 C -0.589 4.589 8 H 0.075 0.925 9 C 0.062 3.938 10 N -0.263 5.263 11 C -0.079 4.079 12 C 0.018 3.982 13 N -0.387 5.387 14 C 0.422 3.578 15 O -0.459 6.459 16 N -0.362 5.362 17 C 0.003 3.997 18 C -0.175 4.175 19 C -0.155 4.155 20 C -0.176 4.176 21 C -0.044 4.044 22 C -0.004 4.004 23 C -0.081 4.081 24 H 0.071 0.929 25 H 0.053 0.947 26 H 0.047 0.953 27 H 0.062 0.938 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.109 0.891 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.093 0.907 38 H 0.086 0.914 39 H 0.080 0.920 40 H 0.130 0.870 41 H 0.087 0.913 42 H 0.095 0.905 43 H 0.062 0.938 44 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 12.550 -15.922 4.437 20.753 hybrid contribution 0.858 1.810 0.171 2.010 sum 13.408 -14.112 4.608 20.004 Atomic orbital electron populations 1.69951 1.05983 1.26740 1.50265 1.24944 0.94745 0.99135 0.94844 0.86609 0.80226 0.83962 0.77680 1.19868 1.20886 1.20926 1.21795 0.93374 0.92101 1.51581 0.92505 1.19769 0.90730 0.85424 0.97918 1.62489 1.16499 1.46833 1.00522 1.22232 0.96621 0.95624 0.93437 1.21635 0.91392 0.98402 0.86744 1.47019 1.05145 1.78850 1.07657 1.15888 0.81533 0.78965 0.81406 1.90862 1.66455 1.51449 1.37132 1.47553 1.07871 1.45019 1.35739 1.21435 0.79041 1.01713 0.97511 1.21951 0.99650 1.00651 0.95279 1.21493 0.95402 0.99604 0.99034 1.21951 0.96132 1.02454 0.97079 1.22421 0.98797 0.96316 0.86880 1.22122 0.96118 0.98780 0.83370 1.22357 0.94651 0.95096 0.95959 0.92859 0.94664 0.95277 0.93751 0.90588 0.90365 0.91906 0.89074 0.91926 0.90897 0.91523 0.91888 0.91850 0.90689 0.91384 0.91982 0.86978 0.91344 0.90484 0.93832 0.90553 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.06 13.29 55.43 0.74 -25.32 16 2 C 0.07 1.85 5.46 -17.82 -0.10 1.76 16 3 Si 0.89 21.74 29.54 -169.99 -5.02 16.72 16 4 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 5 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 7 C -0.55 -15.08 7.76 -34.44 -0.27 -15.35 16 8 H 0.06 1.59 5.88 -52.49 -0.31 1.29 16 9 C 0.19 4.71 5.11 -4.98 -0.03 4.69 16 10 N -0.54 -11.19 4.83 -235.47 -1.14 -12.33 16 11 C 0.05 0.99 5.24 -3.70 -0.02 0.97 16 12 C 0.14 2.34 6.59 -3.60 -0.02 2.32 16 13 N -0.65 -10.52 2.84 -178.84 -0.51 -11.03 16 14 C 0.72 12.13 7.59 -86.91 -0.66 11.47 16 15 O -0.58 -11.98 15.82 5.29 0.08 -11.90 16 16 N -0.62 -8.08 2.96 -178.48 -0.53 -8.61 16 17 C 0.13 1.40 6.42 -3.71 -0.02 1.38 16 18 C -0.14 -1.22 6.08 -26.61 -0.16 -1.38 16 19 C -0.12 -0.90 5.88 -26.69 -0.16 -1.06 16 20 C -0.14 -1.14 5.84 -26.61 -0.16 -1.30 16 21 C 0.08 0.78 5.44 -3.70 -0.02 0.76 16 22 C 0.12 1.72 4.45 -3.36 -0.01 1.70 16 23 C 0.05 0.91 5.18 -3.46 -0.02 0.89 16 24 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 25 H 0.04 0.96 8.07 -51.92 -0.42 0.54 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.04 1.01 7.09 -51.93 -0.37 0.64 16 28 H 0.08 1.47 8.06 -51.93 -0.42 1.05 16 29 H 0.08 1.31 7.47 -51.93 -0.39 0.92 16 30 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.09 1.19 7.02 -51.93 -0.36 0.82 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 37 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.64 7.46 -51.93 -0.39 0.26 16 39 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.11 1.16 3.16 -53.15 -0.17 1.00 16 41 H 0.07 0.88 7.24 -51.93 -0.38 0.50 16 42 H 0.08 0.99 5.30 -51.93 -0.28 0.71 16 43 H 0.04 0.94 6.63 -51.93 -0.34 0.59 16 44 H 0.08 1.37 8.11 -51.93 -0.42 0.95 16 LS Contribution 330.72 15.07 4.98 4.98 Total: -1.00 -31.85 330.72 -10.21 -42.06 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: -7.18 Total: -1.43 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: -1.64 Total: 6.85 kcal Atomic # 7 Polarization: -55.85 SS G_CDS: -1.44 Total: -57.29 kcal Atomic # 8 Polarization: -11.98 SS G_CDS: 0.08 Total: -11.90 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.72 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.85 -10.21 -42.06 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591553723.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.165 kcal (2) G-P(sol) polarization free energy of solvation -31.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds