Wall clock time and date at job start Tue Mar 31 2020 05:22:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31518 * 1 3 3 Si 1.86798 * 119.99874 * 2 1 4 4 H 1.48497 * 109.46989 * 239.99735 * 3 2 1 5 5 H 1.48499 * 109.47126 * 359.97438 * 3 2 1 6 6 H 1.48503 * 109.47076 * 120.00059 * 3 2 1 7 7 C 1.37879 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99545 * 180.02562 * 7 2 1 9 9 C 1.50693 * 120.00045 * 0.27531 * 7 2 1 10 10 C 1.52999 * 109.47191 * 179.72703 * 9 7 2 11 11 N 1.46903 * 109.47171 * 180.02562 * 10 9 7 12 12 C 1.46903 * 110.99454 * 294.29485 * 11 10 9 13 13 C 1.53247 * 109.33715 * 172.74747 * 12 11 10 14 14 N 1.47082 * 108.52037 * 53.83326 * 13 12 11 15 15 C 1.34770 * 120.88200 * 128.79329 * 14 13 12 16 16 O 1.21586 * 120.00185 * 350.15404 * 15 14 13 17 17 N 1.34776 * 120.00028 * 170.15371 * 15 14 13 18 18 C 1.47021 * 125.65190 * 8.37389 * 17 15 14 19 19 C 1.54307 * 107.27917 * 180.96860 * 18 17 15 20 20 C 1.55158 * 102.86407 * 22.52598 * 19 18 17 21 21 C 1.47427 * 125.64612 * 188.68019 * 17 15 14 22 22 C 1.47089 * 118.23586 * 308.81588 * 14 13 12 23 23 C 1.46903 * 111.00054 * 170.00096 * 11 10 9 24 24 H 0.96996 * 119.99946 * 0.02562 * 1 2 3 25 25 H 1.08996 * 109.47445 * 299.72550 * 9 7 2 26 26 H 1.09000 * 109.47157 * 59.72771 * 9 7 2 27 27 H 1.09004 * 109.47036 * 299.99618 * 10 9 7 28 28 H 1.08998 * 109.47431 * 60.00313 * 10 9 7 29 29 H 1.08992 * 109.49577 * 292.70548 * 12 11 10 30 30 H 1.09000 * 109.49306 * 52.79555 * 12 11 10 31 31 H 1.08997 * 109.63060 * 294.12611 * 13 12 11 32 32 H 1.08991 * 109.79191 * 173.63532 * 13 12 11 33 33 H 1.09003 * 109.87851 * 300.51698 * 18 17 15 34 34 H 1.09005 * 109.88531 * 61.67064 * 18 17 15 35 35 H 1.09001 * 110.92415 * 264.10543 * 19 18 17 36 36 H 1.09000 * 110.59351 * 140.78512 * 19 18 17 37 37 H 1.09002 * 111.00034 * 206.23043 * 20 19 18 38 38 H 1.08992 * 111.00667 * 82.37838 * 20 19 18 39 39 H 1.09000 * 110.36671 * 274.67321 * 21 17 15 40 40 H 1.08998 * 110.36682 * 36.99679 * 21 17 15 41 41 H 1.09004 * 109.62557 * 291.47137 * 22 14 13 42 42 H 1.09001 * 109.62162 * 170.89580 * 22 14 13 43 43 H 1.09000 * 109.48926 * 307.21120 * 23 11 10 44 44 H 1.08998 * 109.49551 * 67.26137 * 23 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2124 5 1 1.2841 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 -0.0052 10 6 2.2453 -3.6620 -0.0102 11 7 1.5108 -4.9342 -0.0163 12 6 0.7585 -5.1137 1.2326 13 6 -0.1318 -6.3555 1.1148 14 7 0.7090 -7.4978 0.7256 15 6 0.6687 -8.6537 1.4174 16 8 0.0724 -8.7086 2.4755 17 7 1.2896 -9.7490 0.9363 18 6 2.1847 -9.7839 -0.2295 19 6 2.6361 -11.2476 -0.4170 20 6 1.5187 -12.0485 0.3022 21 6 1.1786 -11.1116 1.4881 22 6 1.5952 -7.3450 -0.4384 23 6 2.4173 -6.0644 -0.2593 24 1 -0.4850 0.8400 -0.0004 25 1 0.6244 -2.5608 0.8845 26 1 0.6245 -2.5530 -0.8954 27 1 2.8720 -3.6005 -0.8999 28 1 2.8719 -3.6082 0.8801 29 1 1.4546 -5.2426 2.0613 30 1 0.1370 -4.2364 1.4121 31 1 -0.8957 -6.1877 0.3557 32 1 -0.6074 -6.5609 2.0737 33 1 1.6516 -9.4419 -1.1166 34 1 3.0532 -9.1503 -0.0493 35 1 3.6017 -11.4210 0.0579 36 1 2.6742 -11.5044 -1.4757 37 1 1.8931 -13.0085 0.6576 38 1 0.6549 -12.1845 -0.3484 39 1 1.8930 -11.2517 2.2993 40 1 0.1635 -11.2971 1.8391 41 1 0.9971 -7.2724 -1.3468 42 1 2.2639 -8.2033 -0.5045 43 1 2.9990 -5.8764 -1.1618 44 1 3.0907 -6.1797 0.5899 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591555747.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:22:29 Heat of formation + Delta-G solvation = 19.620037 kcal Electronic energy + Delta-G solvation = -22752.415062 eV Core-core repulsion = 19513.317303 eV Total energy + Delta-G solvation = -3239.097759 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.83103 -38.38403 -37.38090 -34.91151 -32.93425 -32.01524 -31.02911 -29.87772 -29.15391 -26.91279 -24.39971 -23.70343 -23.04954 -21.62637 -20.93826 -20.29178 -19.38428 -17.21639 -16.89317 -16.37200 -16.16367 -15.01522 -14.97707 -14.69450 -14.49424 -14.37602 -14.00548 -13.94067 -13.52698 -13.46207 -13.14434 -12.63080 -12.62461 -12.23826 -12.08015 -11.58034 -11.52850 -11.36533 -11.14194 -11.00315 -10.93121 -10.71030 -10.63812 -10.44616 -10.01858 -9.84380 -9.35636 -9.14117 -8.97684 -8.38527 -8.33190 -7.74900 -5.99886 -4.02541 2.46955 3.13261 3.33174 3.37755 3.39813 3.63364 4.12288 4.24614 4.36851 4.49640 4.52300 4.83512 4.94979 5.04885 5.07551 5.20521 5.31032 5.35701 5.36307 5.44094 5.45959 5.50280 5.55430 5.61772 5.70767 5.78024 5.83855 5.96417 6.03057 6.14408 6.26401 6.31190 6.44912 6.62991 6.93273 6.96375 7.43840 7.51901 7.76915 7.86947 7.88919 8.06720 8.42336 8.53751 9.04275 9.61078 11.11399 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.043215 B = 0.003139 C = 0.003000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 647.763592 B = 8917.210446 C = 9330.624028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.059 3.941 3 Si 0.893 3.107 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.524 4.524 8 H 0.053 0.947 9 C 0.029 3.971 10 C 0.063 3.937 11 N -0.537 5.537 12 C 0.041 3.959 13 C 0.135 3.865 14 N -0.622 5.622 15 C 0.725 3.275 16 O -0.590 6.590 17 N -0.640 5.640 18 C 0.094 3.906 19 C -0.136 4.136 20 C -0.134 4.134 21 C 0.126 3.874 22 C 0.057 3.943 23 C 0.041 3.959 24 H 0.261 0.739 25 H 0.017 0.983 26 H 0.025 0.975 27 H 0.061 0.939 28 H 0.019 0.981 29 H 0.030 0.970 30 H 0.100 0.900 31 H 0.073 0.927 32 H 0.092 0.908 33 H 0.078 0.922 34 H 0.078 0.922 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.084 0.916 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.076 0.924 41 H 0.071 0.929 42 H 0.126 0.874 43 H 0.082 0.918 44 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.828 -24.099 -2.235 24.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.143 4.143 3 Si 0.720 3.280 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.563 4.563 8 H 0.071 0.929 9 C -0.009 4.009 10 C -0.063 4.063 11 N -0.262 5.262 12 C -0.088 4.088 13 C 0.012 3.988 14 N -0.359 5.359 15 C 0.429 3.571 16 O -0.469 6.469 17 N -0.380 5.380 18 C -0.029 4.029 19 C -0.174 4.174 20 C -0.172 4.172 21 C 0.003 3.997 22 C -0.065 4.065 23 C -0.089 4.089 24 H 0.071 0.929 25 H 0.035 0.965 26 H 0.043 0.957 27 H 0.080 0.920 28 H 0.037 0.963 29 H 0.048 0.952 30 H 0.118 0.882 31 H 0.091 0.909 32 H 0.110 0.890 33 H 0.096 0.904 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.095 0.905 41 H 0.089 0.911 42 H 0.143 0.857 43 H 0.100 0.900 44 H 0.046 0.954 Dipole moment (debyes) X Y Z Total from point charges 3.951 -23.894 -1.991 24.300 hybrid contribution 1.150 1.160 0.537 1.720 sum 5.100 -22.733 -1.454 23.344 Atomic orbital electron populations 1.69958 1.06006 1.26729 1.50465 1.24990 0.94839 0.99165 0.95274 0.86654 0.79575 0.83161 0.78569 1.20248 1.21257 1.20309 1.21144 0.92923 0.91075 1.51116 0.92889 1.19091 0.93946 0.90045 0.97789 1.22346 0.96784 0.88250 0.98944 1.62078 1.27280 1.02438 1.34381 1.22514 0.97376 0.98292 0.90585 1.21688 0.92387 0.83091 1.01619 1.47273 1.44824 1.12314 1.31467 1.15417 0.79293 0.79447 0.82951 1.90902 1.50079 1.83883 1.22014 1.47530 1.50450 1.07655 1.32380 1.22452 0.93595 0.97182 0.89650 1.22743 0.99074 0.93757 1.01796 1.22806 0.99026 0.98218 0.97173 1.22041 1.02263 0.79579 0.95827 1.23416 0.94266 1.00259 0.88588 1.22441 0.94327 0.91418 1.00695 0.92907 0.96468 0.95668 0.92009 0.96255 0.95155 0.88192 0.90902 0.89010 0.90390 0.90421 0.90382 0.89794 0.89719 0.90511 0.91762 0.90524 0.91100 0.85696 0.90015 0.95380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 4 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 5 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.82 9.11 -34.44 -0.31 -15.13 16 8 H 0.05 1.45 7.74 -52.49 -0.41 1.04 16 9 C 0.03 0.74 4.90 -27.89 -0.14 0.60 16 10 C 0.06 1.33 4.90 -3.82 -0.02 1.31 16 11 N -0.54 -9.69 4.63 -234.32 -1.08 -10.77 16 12 C 0.04 0.73 5.46 -3.70 -0.02 0.71 16 13 C 0.13 2.14 6.62 -3.60 -0.02 2.12 16 14 N -0.62 -9.17 3.01 -178.19 -0.54 -9.70 16 15 C 0.73 11.21 8.34 -86.92 -0.73 10.49 16 16 O -0.59 -11.27 16.15 5.29 0.09 -11.19 16 17 N -0.64 -7.32 3.33 -215.70 -0.72 -8.04 16 18 C 0.09 0.72 4.87 -3.07 -0.01 0.70 16 19 C -0.14 -0.69 6.95 -24.91 -0.17 -0.87 16 20 C -0.13 -0.76 7.08 -24.58 -0.17 -0.93 16 21 C 0.13 1.15 6.88 -2.53 -0.02 1.13 16 22 C 0.06 0.68 5.36 -3.60 -0.02 0.66 16 23 C 0.04 0.58 5.62 -3.70 -0.02 0.56 16 24 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 25 H 0.02 0.47 6.40 -51.93 -0.33 0.13 16 26 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 1.26 7.97 -51.93 -0.41 0.85 16 28 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 29 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.10 1.93 6.16 -51.93 -0.32 1.61 16 31 H 0.07 1.13 8.14 -51.93 -0.42 0.71 16 32 H 0.09 1.50 7.05 -51.93 -0.37 1.14 16 33 H 0.08 0.56 6.57 -51.93 -0.34 0.22 16 34 H 0.08 0.57 6.66 -51.93 -0.35 0.23 16 35 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 36 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 37 H 0.08 0.34 8.14 -51.93 -0.42 -0.08 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.08 0.77 8.12 -51.93 -0.42 0.35 16 41 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.13 1.16 2.00 -98.90 -0.20 0.96 16 43 H 0.08 1.05 7.99 -51.93 -0.41 0.63 16 44 H 0.03 0.42 8.14 -51.93 -0.42 -0.01 16 LS Contribution 337.35 15.07 5.08 5.08 Total: -1.00 -33.81 337.35 -10.55 -44.37 By element: Atomic # 1 Polarization: 4.11 SS G_CDS: -7.34 Total: -3.23 kcal Atomic # 6 Polarization: 4.70 SS G_CDS: -1.76 Total: 2.95 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -1.60 Total: -54.63 kcal Atomic # 8 Polarization: -11.27 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -33.81 -10.55 -44.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591555747.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.986 kcal (2) G-P(sol) polarization free energy of solvation -33.811 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.174 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds