Wall clock time and date at job start Tue Mar 31 2020 05:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.42897 * 114.00022 * 2 1 4 4 C 1.52998 * 109.47236 * 179.97438 * 3 2 1 5 5 N 1.46898 * 109.47223 * 67.35237 * 4 3 2 6 6 C 1.46900 * 111.00182 * 158.75868 * 5 4 3 7 7 C 1.50705 * 109.47006 * 288.12712 * 6 5 4 8 8 H 1.07998 * 119.99911 * 3.21582 * 7 6 5 9 9 C 1.37872 * 120.00016 * 183.22017 * 7 6 5 10 10 N 1.31519 * 120.00183 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99867 * 179.97438 * 9 7 6 12 12 H 1.48500 * 109.46996 * 90.00631 * 11 9 7 13 13 H 1.48509 * 109.47067 * 209.99884 * 11 9 7 14 14 H 1.48495 * 109.47373 * 329.99957 * 11 9 7 15 15 C 1.46904 * 111.00176 * 282.71374 * 5 4 3 16 16 C 1.50692 * 109.47200 * 170.31594 * 15 5 4 17 17 C 1.34681 * 126.58902 * 95.16406 * 16 15 5 18 18 N 1.34131 * 108.01663 * 180.28190 * 17 16 15 19 19 C 1.30497 * 109.26038 * 359.73663 * 18 17 16 20 20 N 1.35044 * 108.69816 * 359.97438 * 19 18 17 21 21 C 1.46500 * 126.39901 * 180.02562 * 20 19 18 22 22 C 1.52996 * 109.47464 * 60.01874 * 21 20 19 23 23 C 1.53001 * 109.46831 * 300.02142 * 21 20 19 24 24 H 1.09001 * 109.46688 * 60.00126 * 1 2 3 25 25 H 1.08998 * 109.47027 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46940 * 300.00224 * 1 2 3 27 27 H 1.09006 * 109.47008 * 59.99764 * 3 2 1 28 28 H 1.09000 * 109.47034 * 300.00131 * 3 2 1 29 29 H 1.09008 * 109.46785 * 307.35470 * 4 3 2 30 30 H 1.08997 * 109.47301 * 187.35533 * 4 3 2 31 31 H 1.08998 * 109.46917 * 48.12343 * 6 5 4 32 32 H 1.09000 * 109.46961 * 168.12565 * 6 5 4 33 33 H 0.96992 * 120.00277 * 179.97438 * 10 9 7 34 34 H 1.08997 * 109.46866 * 50.31673 * 15 5 4 35 35 H 1.08998 * 109.46727 * 290.32145 * 15 5 4 36 36 H 1.07996 * 125.99109 * 0.05461 * 17 16 15 37 37 H 1.08000 * 125.65317 * 180.02562 * 19 18 17 38 38 H 1.08994 * 109.47344 * 180.02562 * 21 20 19 39 39 H 1.09005 * 109.47091 * 300.00645 * 22 21 20 40 40 H 1.08996 * 109.47249 * 180.02562 * 22 21 20 41 41 H 1.09001 * 109.46999 * 60.00214 * 22 21 20 42 42 H 1.08996 * 109.47194 * 180.02562 * 23 21 20 43 43 H 1.09008 * 109.47273 * 300.00203 * 23 21 20 44 44 H 1.09005 * 109.46975 * 59.99814 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9821 0.6141 -1.2772 6 6 5.3926 0.9352 -1.5329 7 6 5.5211 2.3977 -1.8734 8 1 4.6509 3.0368 -1.8469 9 6 6.7495 2.9197 -2.2190 10 7 7.8091 2.1413 -2.2519 11 14 6.9086 4.7322 -2.6418 12 1 7.2055 5.5040 -1.4083 13 1 8.0113 4.9176 -3.6191 14 1 5.6357 5.2160 -3.2341 15 6 3.7577 -0.8372 -1.3129 16 6 4.0016 -1.3491 -2.7091 17 6 5.1464 -1.8782 -3.1816 18 7 4.9531 -2.2030 -4.4686 19 6 3.7304 -1.9006 -4.8099 20 7 3.1011 -1.3690 -3.7398 21 6 1.7154 -0.8958 -3.6927 22 6 0.7701 -2.0521 -4.0245 23 6 1.5252 0.2275 -4.7139 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8900 27 1 1.6886 1.8464 0.8900 28 1 1.6886 1.8463 -0.8900 29 1 3.8481 0.5345 0.8179 30 1 3.9781 2.1720 0.1322 31 1 5.9821 0.7163 -0.6426 32 1 5.7566 0.3347 -2.3665 33 1 8.6732 2.5084 -2.4954 34 1 2.7300 -1.0533 -1.0210 35 1 4.4426 -1.3278 -0.6212 36 1 6.0610 -2.0134 -2.6234 37 1 3.2939 -2.0512 -5.7862 38 1 1.4935 -0.5202 -2.6939 39 1 0.9920 -2.4277 -5.0234 40 1 -0.2608 -1.6999 -3.9899 41 1 0.9056 -2.8524 -3.2970 42 1 0.4944 0.5799 -4.6786 43 1 2.1987 1.0514 -4.4776 44 1 1.7471 -0.1481 -5.7128 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000591834511.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:22 Heat of formation + Delta-G solvation = 17.601916 kcal Electronic energy + Delta-G solvation = -23719.040535 eV Core-core repulsion = 20479.855264 eV Total energy + Delta-G solvation = -3239.185271 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 281.184 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.57208 -38.08057 -36.12308 -35.67187 -32.54076 -30.97837 -30.00685 -28.80651 -27.27568 -26.81198 -26.17587 -24.04498 -22.71457 -22.26779 -20.49208 -20.32958 -18.65721 -16.66056 -16.49895 -16.17106 -15.70515 -15.23378 -14.80175 -14.64206 -14.55626 -13.87263 -13.79101 -13.60514 -13.17709 -13.00545 -12.77714 -12.31854 -12.28778 -12.11420 -11.81978 -11.69978 -11.45268 -11.38888 -11.30426 -10.98423 -10.90510 -10.77473 -10.64504 -10.34704 -9.84567 -9.47633 -9.18801 -9.18136 -8.96206 -8.37532 -7.69151 -7.22378 -5.96073 -3.97293 2.63837 3.27157 3.32858 3.39878 3.42749 3.80642 3.97227 4.46407 4.72413 4.94605 5.03388 5.11570 5.18576 5.25631 5.32392 5.35807 5.39517 5.46860 5.58351 5.61810 5.62369 5.72510 5.74037 5.75503 5.83784 5.93547 6.00244 6.09809 6.28888 6.32415 6.35400 6.46508 6.57554 7.03647 7.31602 7.32919 7.40600 7.43862 7.81693 7.84496 8.18289 8.25611 8.58546 8.70590 9.09070 9.65854 11.14448 Molecular weight = 281.18amu Principal moments of inertia in cm(-1) A = 0.013091 B = 0.006860 C = 0.005463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2138.428645 B = 4080.849109 C = 5124.505262 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.388 6.388 3 C 0.066 3.934 4 C 0.063 3.937 5 N -0.529 5.529 6 C 0.187 3.813 7 C -0.506 4.506 8 H 0.059 0.941 9 C 0.057 3.943 10 N -0.894 5.894 11 Si 0.893 3.107 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.275 1.275 15 C 0.118 3.882 16 C 0.013 3.987 17 C -0.025 4.025 18 N -0.495 5.495 19 C 0.164 3.836 20 N -0.439 5.439 21 C 0.130 3.870 22 C -0.160 4.160 23 C -0.160 4.160 24 H 0.037 0.963 25 H 0.078 0.922 26 H 0.036 0.964 27 H 0.043 0.957 28 H 0.056 0.944 29 H 0.031 0.969 30 H 0.099 0.901 31 H -0.013 1.013 32 H 0.046 0.954 33 H 0.260 0.740 34 H 0.095 0.905 35 H 0.041 0.959 36 H 0.162 0.838 37 H 0.192 0.808 38 H 0.106 0.894 39 H 0.061 0.939 40 H 0.071 0.929 41 H 0.061 0.939 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.867 -5.747 0.939 17.844 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.307 6.307 3 C -0.010 4.010 4 C -0.066 4.066 5 N -0.254 5.254 6 C 0.062 3.938 7 C -0.544 4.544 8 H 0.077 0.923 9 C -0.145 4.145 10 N -0.533 5.533 11 Si 0.721 3.279 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.200 1.200 15 C -0.011 4.011 16 C -0.102 4.102 17 C -0.173 4.173 18 N -0.213 5.213 19 C -0.118 4.118 20 N -0.123 5.123 21 C 0.026 3.974 22 C -0.218 4.218 23 C -0.218 4.218 24 H 0.056 0.944 25 H 0.097 0.903 26 H 0.054 0.946 27 H 0.061 0.939 28 H 0.074 0.926 29 H 0.049 0.951 30 H 0.117 0.883 31 H 0.005 0.995 32 H 0.064 0.936 33 H 0.070 0.930 34 H 0.112 0.888 35 H 0.059 0.941 36 H 0.179 0.821 37 H 0.208 0.792 38 H 0.125 0.875 39 H 0.080 0.920 40 H 0.090 0.910 41 H 0.080 0.920 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -16.388 -5.997 0.010 17.451 hybrid contribution -0.057 1.369 0.782 1.578 sum -16.445 -4.629 0.792 17.102 Atomic orbital electron populations 1.22680 0.82435 1.01986 0.99617 1.87894 1.18574 1.29066 1.95171 1.22789 0.94853 0.83814 0.99584 1.22065 0.91621 1.01611 0.91290 1.62154 1.25068 1.08058 1.30070 1.19855 0.80649 0.97163 0.96136 1.21100 0.93701 0.93823 1.45808 0.92301 1.24960 0.95924 0.97753 0.95829 1.69954 0.99469 1.35119 1.48744 0.86583 0.77670 0.85496 0.78122 1.20834 1.21296 1.20009 1.20677 1.01999 0.89866 0.88560 1.21151 0.90851 1.06018 0.92180 1.21972 0.97720 1.05679 0.91920 1.70191 1.14901 1.22573 1.13644 1.24485 0.90059 1.03585 0.93666 1.45323 1.10852 1.45975 1.10156 1.21349 0.78822 0.94619 1.02561 1.22165 0.99087 0.98138 1.02365 1.22129 1.02586 0.98693 0.98368 0.94417 0.90316 0.94558 0.93861 0.92608 0.95107 0.88284 0.99531 0.93596 0.92984 0.88763 0.94123 0.82092 0.79166 0.87548 0.92034 0.91039 0.92020 0.91339 0.90727 0.92301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 11.01 101.05 1.11 1.41 16 2 O -0.39 -5.36 7.88 -35.23 -0.28 -5.64 16 3 C 0.07 0.97 6.25 37.16 0.23 1.20 16 4 C 0.06 1.14 5.36 -3.83 -0.02 1.12 16 5 N -0.53 -10.99 4.37 -237.52 -1.04 -12.02 16 6 C 0.19 4.82 4.59 -4.97 -0.02 4.80 16 7 C -0.51 -14.08 8.38 -34.44 -0.29 -14.37 16 8 H 0.06 1.61 7.61 -52.49 -0.40 1.21 16 9 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -26.95 13.29 55.43 0.74 -26.21 16 11 Si 0.89 21.82 29.54 -169.99 -5.02 16.80 16 12 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 14 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 15 C 0.12 2.20 4.78 -4.98 -0.02 2.17 16 16 C 0.01 0.26 5.73 -81.60 -0.47 -0.21 16 17 C -0.02 -0.52 10.40 -17.81 -0.19 -0.70 16 18 N -0.49 -10.17 11.25 -14.66 -0.16 -10.33 16 19 C 0.16 2.79 11.55 -90.38 -1.04 1.75 16 20 N -0.44 -7.28 2.62 -106.92 -0.28 -7.56 16 21 C 0.13 1.67 3.56 -67.93 -0.24 1.43 16 22 C -0.16 -1.55 9.24 37.16 0.34 -1.21 16 23 C -0.16 -1.94 9.24 37.16 0.34 -1.60 16 24 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 25 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 27 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 29 H 0.03 0.55 7.98 -51.92 -0.41 0.14 16 30 H 0.10 1.94 6.98 -51.93 -0.36 1.58 16 31 H -0.01 -0.36 8.05 -51.93 -0.42 -0.78 16 32 H 0.05 1.30 5.83 -51.93 -0.30 1.00 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 34 H 0.09 1.61 4.48 -51.93 -0.23 1.38 16 35 H 0.04 0.78 8.12 -51.93 -0.42 0.35 16 36 H 0.16 3.37 8.06 -52.49 -0.42 2.95 16 37 H 0.19 2.50 8.06 -52.49 -0.42 2.08 16 38 H 0.11 1.48 6.94 -51.93 -0.36 1.12 16 39 H 0.06 0.56 7.95 -51.93 -0.41 0.15 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 1.15 8.14 -51.92 -0.42 0.73 16 44 H 0.06 0.66 7.95 -51.93 -0.41 0.25 16 LS Contribution 355.40 15.07 5.36 5.36 Total: -1.00 -32.47 355.40 -8.57 -41.04 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -7.52 Total: 1.26 kcal Atomic # 6 Polarization: -2.33 SS G_CDS: -0.36 Total: -2.69 kcal Atomic # 7 Polarization: -55.38 SS G_CDS: -0.75 Total: -56.13 kcal Atomic # 8 Polarization: -5.36 SS G_CDS: -0.28 Total: -5.64 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -32.47 -8.57 -41.04 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000591834511.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.642 kcal (2) G-P(sol) polarization free energy of solvation -32.469 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.571 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds